Experiment set1IT029 for Pseudomonas fluorescens FW300-N2E2

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Carnitine Hydrochloride carbon source

Genes with specific phenotypes:

  gene name fitness t score description  
Pf6N2E2_4686 -7.5 -7.3 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain conserved
Pf6N2E2_4681 -7.0 -8.3 ABC transporter for Carnitine, ATPase component (from data) conserved
Pf6N2E2_4692 -6.9 -9.5 dehydrocarnitine cleavage enzyme (EC 2.3.1.-) (from data) conserved
Pf6N2E2_4694 -6.6 -6.4 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain conserved
Pf6N2E2_4682 -5.6 -8.5 ABC transporter for Carnitine, permease component (from data) conserved
Pf6N2E2_4689 -5.1 -7.8 L-carnitine 3-dehydrogenase, B subunit (EC 1.1.1.108) (from data) conserved
Pf6N2E2_4719 -4.7 -8.5 Sarcosine oxidase delta subunit (EC 1.5.3.1) conserved
Pf6N2E2_4683 -4.5 -8.7 L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) conserved
Pf6N2E2_4713 -4.4 -12.4 GbcA Glycine betaine demethylase subunit A conserved
Pf6N2E2_4701 -4.3 -13.0 FIG00953113: hypothetical protein conserved
Pf6N2E2_4714 -4.3 -14.2 GbcB Glycine betaine demethylase subunit B conserved
Pf6N2E2_4700 -4.3 -6.7 Microsomal dipeptidase (EC 3.4.13.19) conserved
Pf6N2E2_4718 -4.2 -9.7 Sarcosine oxidase beta subunit (EC 1.5.3.1) conserved
Pf6N2E2_5260 -4.1 -12.1 Phosphate acetyltransferase (EC 2.3.1.8) conserved
Pf6N2E2_4704 -4.0 -13.6 Dimethylglycine dehydrogenase (ferredoxin), FeS subunit DgcB (EC 1.5.7.-) (from data) conserved
Pf6N2E2_4705 -3.9 -8.1 Electron transfer flavoprotein, alpha subunit conserved
Pf6N2E2_4690 -3.7 -7.5 L-carnitine 3-dehydrogenase, A subunit (EC 1.1.1.108) (from data) conserved
Pf6N2E2_4702 -3.5 -11.9 DgcA Dimethylglycine demethylase subunit A conserved
Pf6N2E2_4720 -3.2 -15.8 Sarcosine oxidase alpha subunit (EC 1.5.3.1) conserved
Pf6N2E2_4717 -2.8 -8.1 Serine hydroxymethyltransferase (EC 2.1.2.1) conserved
Pf6N2E2_2112 -2.0 -6.2 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit B (from data) conserved
Pf6N2E2_2042 -1.9 -12.4 Acetoacetyl-CoA synthetase (EC 6.2.1.16) conserved
Pf6N2E2_3871 -1.7 -8.7 FIG00553872: hypothetical protein compare
Pf6N2E2_2040 -1.6 -7.9 D-beta-hydroxybutyrate permease compare
Pf6N2E2_4685 -1.2 -8.2 L-serine dehydratase (EC 4.3.1.17) conserved
Pf6N2E2_2113 -1.2 -6.0 Acetyl-CoA acetyltransferase (EC 2.3.1.9) conserved
Pf6N2E2_4687 +1.1 7.1 FIG00953780: hypothetical protein compare
Pf6N2E2_4688 +1.6 9.3 Gamma-butyrobetaine,2-oxoglutarate dioxygenase (EC 1.14.11.1) compare


Specific phenotypes for carbon source Carnitine Hydrochloride across organisms