Experiment set1IT029 for Pseudomonas fluorescens FW300-N2C3

Compare to:

D-Gluconic Acid sodium salt carbon source

200 most important genes:

  gene name fitness t score description  
AO356_14440 -5.0 -5.9 indole-3-glycerol-phosphate synthase compare
AO356_14435 -4.8 -7.3 anthranilate phosphoribosyltransferase compare
AO356_21440 -4.8 -8.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_08635 -4.7 -9.1 ATP phosphoribosyltransferase regulatory subunit compare
AO356_21415 -4.5 -10.9 3-isopropylmalate dehydrogenase compare
AO356_21400 -4.5 -8.0 isopropylmalate isomerase compare
AO356_21405 -4.4 -5.2 3-isopropylmalate dehydratase compare
AO356_09815 -4.3 -5.9 imidazoleglycerol-phosphate dehydratase compare
AO356_18275 -4.2 -13.4 ornithine carbamoyltransferase compare
AO356_09370 -4.2 -15.2 glutamate synthase compare
AO356_16175 -4.2 -7.0 acetolactate synthase 3 regulatory subunit compare
AO356_06965 -4.1 -8.7 histidinol dehydrogenase compare
AO356_09800 -4.1 -2.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_13410 -4.1 -12.2 homoserine O-acetyltransferase compare
AO356_13405 -4.1 -10.4 methionine biosynthesis protein MetW compare
AO356_13085 -4.0 -10.4 N-acetylglutamate synthase compare
AO356_12525 -4.0 -9.9 acetylglutamate kinase compare
AO356_10915 -4.0 -10.8 tryptophan synthase subunit beta compare
AO356_13605 -3.9 -8.4 5,10-methylenetetrahydrofolate reductase compare
AO356_09375 -3.9 -22.5 glutamate synthase compare
AO356_09520 -3.9 -5.3 phosphoribosyl-AMP cyclohydrolase compare
AO356_18325 -3.9 -12.1 argininosuccinate synthase compare
AO356_06970 -3.9 -7.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_13250 -3.7 -10.2 dihydroxy-acid dehydratase compare
AO356_09810 -3.7 -4.4 imidazole glycerol phosphate synthase subunit HisH compare
AO356_16170 -3.7 -11.2 acetolactate synthase 3 catalytic subunit compare
AO356_12520 -3.5 -2.4 orotate phosphoribosyltransferase compare
AO356_06550 -3.5 -10.5 2-isopropylmalate synthase compare
AO356_16180 -3.5 -15.1 ketol-acid reductoisomerase compare
AO356_02175 -3.4 -9.1 transaldolase compare
AO356_09525 -3.4 -7.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_19090 -3.4 -2.3 phosphoribosylaminoimidazole synthetase compare
AO356_12025 -3.3 -15.4 pyruvate carboxylase subunit B compare
AO356_08905 -3.3 -2.2 glycosyl transferase compare
AO356_08735 -3.3 -13.2 phosphoserine phosphatase compare
AO356_19795 -3.2 -3.1 glycerol-3-phosphate dehydrogenase compare
AO356_21470 -3.2 -8.3 O-succinylhomoserine sulfhydrylase compare
AO356_14420 -3.2 -15.0 anthranilate synthase compare
AO356_12020 -3.2 -13.4 pyruvate carboxylase subunit A compare
AO356_00555 -3.0 -10.6 sulfite reductase compare
AO356_10340 -3.0 -12.9 phosphoserine phosphatase compare
AO356_02315 -2.9 -5.2 DNA topoisomerase I compare
AO356_14430 -2.9 -9.3 anthranilate synthase compare
AO356_10910 -2.9 -8.9 tryptophan synthase subunit alpha compare
AO356_12780 -2.8 -7.4 argininosuccinate lyase compare
AO356_21465 -2.7 -5.1 amidophosphoribosyltransferase compare
AO356_16075 -2.7 -5.4 Fis family transcriptional regulator compare
AO356_07915 -2.7 -2.6 exodeoxyribonuclease V subunit beta compare
AO356_17830 -2.6 -5.9 pyruvate kinase compare
AO356_05160 -2.4 -8.7 glucose-6-phosphate dehydrogenase compare
AO356_22200 -2.4 -7.9 sirohydrochlorin ferrochelatase compare
AO356_16050 -2.4 -2.8 glucose-6-phosphate isomerase compare
AO356_17520 -2.4 -2.3 phosphoribosylformylglycinamidine synthase compare
AO356_22795 -2.3 -2.7 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_08895 -2.2 -1.5 GlcNAc-PI de-N-acetylase compare
AO356_12015 -2.2 -10.1 LysR family transcriptional regulator compare
AO356_20155 -2.1 -5.1 phosphate acyltransferase compare
AO356_11315 -2.1 -1.4 shikimate dehydrogenase compare
AO356_10300 -2.0 -2.6 3-phosphoglycerate dehydrogenase compare
AO356_05225 -2.0 -5.5 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_08585 -1.9 -3.9 50S ribosomal protein L9 compare
AO356_12005 -1.9 -10.8 transcriptional regulator compare
AO356_06065 -1.9 -3.4 ArsC family transcriptional regulator compare
AO356_00560 -1.8 -2.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_07910 -1.8 -1.7 exodeoxyribonuclease V subunit alpha compare
AO356_07020 -1.8 -2.0 LPS export ABC transporter periplasmic protein LptC compare
AO356_03360 -1.8 -2.8 hypothetical protein compare
AO356_15815 -1.7 -2.5 gamma-glutamyl kinase compare
AO356_12515 -1.7 -3.1 exodeoxyribonuclease III compare
AO356_10585 -1.7 -10.1 hypothetical protein compare
AO356_14825 -1.6 -2.7 AraC family transcriptional regulator compare
AO356_18730 -1.4 -7.0 arginine N-succinyltransferase compare
AO356_07390 -1.4 -1.8 polyribonucleotide nucleotidyltransferase compare
AO356_09795 -1.4 -1.1 imidazole glycerol phosphate synthase subunit HisF compare
AO356_08985 -1.4 -1.4 hypothetical protein compare
AO356_07480 -1.3 -2.8 carbamoyl phosphate synthase large subunit compare
AO356_24620 -1.3 -3.3 glutathione S-transferase compare
AO356_17950 -1.3 -6.1 histidine kinase compare
AO356_29105 -1.3 -2.1 fumarylacetoacetate hydrolase compare
AO356_05010 -1.3 -7.6 diguanylate cyclase compare
AO356_08975 -1.2 -8.1 diguanylate cyclase compare
AO356_21260 -1.2 -1.2 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
AO356_17890 -1.2 -1.8 H-NS histone compare
AO356_12900 -1.2 -2.8 exopolyphosphatase compare
AO356_01095 -1.1 -3.4 glycolate oxidase compare
AO356_17485 -1.1 -3.6 elongation factor 4 compare
AO356_19835 -1.1 -2.0 histidine kinase compare
AO356_21410 -1.1 -2.9 SAM-dependent methyltransferase compare
AO356_12380 -1.1 -4.8 ATP-dependent DNA helicase RecG compare
AO356_16450 -1.1 -2.7 GTP-binding protein compare
AO356_15165 -1.1 -2.0 protein cII compare
AO356_01750 -1.1 -2.8 ATP-dependent Clp protease proteolytic subunit compare
AO356_08890 -1.0 -4.4 glycosyltransferase compare
AO356_18735 -1.0 -3.6 arginine N-succinyltransferase compare
AO356_22825 -1.0 -2.3 transcriptional regulator compare
AO356_10170 -1.0 -1.6 chemotaxis protein CheY compare
AO356_03810 -1.0 -3.5 anti-anti-sigma factor compare
AO356_01745 -1.0 -3.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_06960 -1.0 -4.2 histidinol-phosphate aminotransferase compare
AO356_10330 -1.0 -7.3 threonine dehydratase compare
AO356_22665 -0.9 -2.6 chemotaxis protein compare
AO356_02250 -0.9 -4.9 pyridine nucleotide-disulfide oxidoreductase compare
AO356_08875 -0.9 -2.1 toluene tolerance protein compare
AO356_16260 -0.9 -4.3 ribosomal-protein-alanine acetyltransferase compare
AO356_03715 -0.9 -4.9 chemotaxis protein CheA compare
AO356_12990 -0.9 -4.3 5-formyltetrahydrofolate cyclo-ligase compare
AO356_19170 -0.9 -3.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
AO356_19810 -0.9 -2.5 esterase compare
AO356_00525 -0.9 -1.9 cobalamin biosynthesis protein CobE compare
AO356_15980 -0.9 -2.6 hypothetical protein compare
AO356_13700 -0.9 -3.2 hypothetical protein compare
AO356_22995 -0.9 -2.3 ArsR family transcriptional regulator compare
AO356_24745 -0.8 -1.5 iron dicitrate transport regulator FecR compare
AO356_29225 -0.8 -3.0 rhizopine-binding protein compare
AO356_25865 -0.8 -1.3 peroxidase compare
AO356_06605 -0.8 -2.6 23S rRNA (adenine(2503)-C2)-methyltransferase compare
AO356_08215 -0.8 -4.2 tRNA-dihydrouridine synthase B compare
AO356_04575 -0.8 -5.0 RNA polymerase subunit sigma compare
AO356_21320 -0.8 -1.0 tRNA-Asn compare
AO356_15295 -0.8 -2.7 nicotinate-nucleotide adenylyltransferase compare
AO356_14050 -0.8 -1.1 glutathione S-transferase compare
AO356_24820 -0.8 -1.4 calcium-binding protein compare
AO356_12735 -0.8 -1.2 diaminopimelate epimerase compare
AO356_18020 -0.8 -2.1 ATP-dependent DNA helicase RuvA compare
AO356_26910 -0.8 -1.9 hypothetical protein compare
AO356_16070 -0.8 -2.8 poly(A) polymerase compare
AO356_16760 -0.8 -3.6 hypothetical protein compare
AO356_27635 -0.7 -2.9 histidine kinase compare
AO356_16735 -0.7 -2.2 D-erythro-7,8-dihydroneopterin triphosphate epimerase compare
AO356_08275 -0.7 -2.3 precorrin isomerase compare
AO356_08880 -0.7 -3.2 glycosyl transferase compare
AO356_19145 -0.7 -1.4 5,6-dimethylbenzimidazole synthase compare
AO356_25665 -0.7 -1.2 3-beta hydroxysteroid dehydrogenase compare
AO356_02465 -0.7 -0.8 carbonate dehydratase compare
AO356_06250 -0.7 -2.5 chemotaxis protein CheY compare
AO356_18775 -0.7 -2.0 aspartate kinase compare
AO356_15450 -0.7 -5.9 AMP nucleosidase compare
AO356_08280 -0.7 -2.4 oxidoreductase compare
AO356_06005 -0.7 -2.3 zinc metallopeptidase RseP compare
AO356_24725 -0.7 -1.2 alkylhydroperoxidase compare
AO356_11675 -0.7 -4.1 chromosome partitioning protein compare
AO356_28675 -0.7 -1.1 glycosyl hydrolase compare
AO356_03095 -0.7 -3.5 protease HtpX compare
AO356_29355 -0.7 -1.1 hypothetical protein compare
AO356_10695 -0.7 -4.4 diguanylate cyclase compare
AO356_26635 -0.7 -1.9 hydrolase compare
AO356_27245 -0.7 -1.5 hypothetical protein compare
AO356_25130 -0.7 -1.7 hypothetical protein compare
AO356_18370 -0.7 -1.6 NADH:quinone oxidoreductase compare
AO356_04445 -0.7 -1.4 5-carboxymethyl-2-hydroxymuconate isomerase compare
AO356_25975 -0.7 -3.1 aldehyde dehydrogenase compare
AO356_01915 -0.7 -1.6 hypothetical protein compare
AO356_18805 -0.7 -0.9 magnesium transporter compare
AO356_21435 -0.7 -2.2 pseudouridine synthase compare
AO356_25485 -0.6 -1.8 aldehyde dehydrogenase compare
AO356_14445 -0.6 -1.9 lipoate--protein ligase compare
AO356_21510 -0.6 -2.0 addiction module toxin RelE compare
AO356_03355 -0.6 -1.8 hypothetical protein compare
AO356_05885 -0.6 -4.3 RNA polymerase sigma factor RpoS compare
AO356_05755 -0.6 -1.5 ArsR family transcriptional regulator compare
AO356_28910 -0.6 -1.0 LysR family transcriptional regulator compare
AO356_03345 -0.6 -3.7 hypothetical protein compare
AO356_18810 -0.6 -2.3 DNA-binding protein compare
AO356_13685 -0.6 -1.9 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_30275 -0.6 -1.3 hypothetical protein compare
AO356_28300 -0.6 -0.9 hypothetical protein compare
AO356_28315 -0.6 -2.0 hypothetical protein compare
AO356_13590 -0.6 -4.1 DEAD/DEAH box helicase compare
AO356_28170 -0.6 -1.6 hypothetical protein compare
AO356_21095 -0.6 -1.0 thioesterase compare
AO356_21220 -0.6 -1.5 peptide ABC transporter substrate-binding protein compare
AO356_01695 -0.6 -1.6 1-aminocyclopropane-1-carboxylate deaminase compare
AO356_07920 -0.6 -2.4 exodeoxyribonuclease V subunit gamma compare
AO356_07495 -0.6 -1.7 molecular chaperone DnaJ compare
AO356_27915 -0.6 -0.8 salicylaldehyde dehydrogenase compare
AO356_28100 -0.6 -2.4 sulfurtransferase compare
AO356_13595 -0.6 -3.6 amino acid ABC transporter substrate-binding protein compare
AO356_13745 -0.6 -3.8 amino acid ABC transporter substrate-binding protein compare
AO356_11610 -0.6 -0.9 glycerol acyltransferase compare
AO356_01555 -0.6 -3.2 acyl-CoA dehydrogenase compare
AO356_25750 -0.6 -1.1 GntR family transcriptional regulator compare
AO356_27250 -0.6 -2.9 hypothetical protein compare
AO356_09755 -0.6 -2.3 preprotein translocase subunit SecB compare
AO356_00615 -0.6 -1.7 choline ABC transporter ATP-binding protein compare
AO356_25120 -0.6 -1.4 hypothetical protein compare
AO356_08640 -0.6 -1.8 membrane protease HflC compare
AO356_21835 -0.6 -1.2 glyoxalase compare
AO356_29315 -0.5 -1.0 acyl-CoA dehydrogenase compare
AO356_07905 -0.5 -1.6 hypothetical protein compare
AO356_05065 -0.5 -3.6 LacI family transcriptional regulator compare
AO356_13425 -0.5 -1.5 hypothetical protein compare
AO356_03425 -0.5 -3.1 chain-length determining protein compare
AO356_08295 -0.5 -1.8 cobalt-precorrin-6A synthase compare
AO356_11055 -0.5 -1.4 long-chain acyl-CoA thioester hydrolase compare
AO356_11345 -0.5 -2.2 4,5-dioxygenase compare
AO356_13220 -0.5 -2.3 purine nucleoside phosphorylase compare
AO356_12925 -0.5 -1.0 GntR family transcriptional regulator compare
AO356_17705 -0.5 -3.8 diguanylate cyclase compare
AO356_21275 -0.5 -1.0 peptidase compare
AO356_05670 -0.5 -1.1 recombinase RecA compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source D-Gluconic Acid sodium salt in Pseudomonas fluorescens FW300-N2C3

For carbon source D-Gluconic Acid sodium salt across organisms