Experiment set1IT029 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Potassium acetate carbon source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_1408 -4.0 -4.7 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_6 -3.6 -5.9 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_1565 -3.5 -4.1 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_1534 -3.3 -18.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_1533 -3.3 -8.5 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_1624 -3.3 -9.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_2549 -3.2 -10.1 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_12 -3.1 -8.0 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2545 -3.1 -14.7 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_2548 -3.1 -7.4 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_1627 -3.1 -5.5 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_2879 -3.1 -7.6 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_2009 -3.1 -5.1 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_847 -3.1 -9.8 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_1889 -3.1 -17.9 Fused spore maturation proteins A and B compare
Pf1N1B4_1067 -3.0 -7.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_2547 -3.0 -3.5 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_2880 -3.0 -12.6 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_5665 -2.9 -6.2 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_4042 -2.9 -6.5 Isocitrate lyase (EC 4.1.3.1) (from data) compare
Pf1N1B4_1830 -2.8 -9.3 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_2303 -2.8 -14.5 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_15 -2.8 -4.9 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_1434 -2.8 -8.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_1617 -2.8 -8.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_2272 -2.8 -4.6 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_1831 -2.8 -12.0 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_2338 -2.8 -8.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1315 -2.7 -8.9 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_350 -2.7 -7.4 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_1626 -2.7 -7.8 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_742 -2.6 -8.0 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_1307 -2.6 -3.1 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_2878 -2.6 -8.8 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_3726 -2.5 -5.3 Sensory box histidine kinase/response regulator compare
Pf1N1B4_2384 -2.5 -9.9 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_5666 -2.5 -4.0 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_1619 -2.5 -10.3 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf1N1B4_2554 -2.4 -6.4 Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) conserved
Pf1N1B4_2011 -2.4 -9.1 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_3430 -2.4 -13.5 Acetyl-coenzyme A synthetase (EC 6.2.1.1) conserved
Pf1N1B4_2939 -2.4 -5.8 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_2010 -2.4 -6.5 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_3833 -2.3 -7.6 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_58 -2.3 -7.3 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_2337 -2.3 -5.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_762 -2.3 -6.6 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_348 -2.3 -4.9 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_3725 -2.2 -6.2 Sensory box histidine kinase/response regulator compare
Pf1N1B4_1849 -2.2 -5.2 Carbonic anhydrase (EC 4.2.1.1) conserved
Pf1N1B4_2478 -2.2 -7.8 Malate synthase G (EC 2.3.3.9) compare
Pf1N1B4_4065 -2.2 -7.2 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_3697 -2.2 -8.4 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_3917 -2.2 -5.1 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf1N1B4_2493 -2.1 -3.8 Acyl-CoA dehydrogenase (EC 1.3.8.7) compare
Pf1N1B4_2284 -2.0 -5.4 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf1N1B4_2917 -1.9 -8.4 FIG140336: TPR domain protein compare
Pf1N1B4_2282 -1.9 -8.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_3518 -1.8 -3.3 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_1566 -1.7 -6.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_967 -1.7 -2.5 hypothetical protein compare
Pf1N1B4_4980 -1.7 -2.6 putative lipoprotein compare
Pf1N1B4_291 -1.7 -7.8 Major outer membrane lipoprotein I compare
Pf1N1B4_27 -1.7 -5.2 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_875 -1.6 -2.8 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_345 -1.6 -2.1 Integration host factor beta subunit compare
Pf1N1B4_1906 -1.6 -3.7 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_327 -1.5 -2.4 hypothetical protein compare
Pf1N1B4_1492 -1.5 -1.9 FIG00959437: hypothetical protein compare
Pf1N1B4_1180 -1.5 -2.6 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf1N1B4_3506 -1.5 -6.4 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_3812 -1.5 -6.5 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_3081 -1.4 -11.9 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_1545 -1.4 -7.8 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf1N1B4_407 -1.4 -1.2 ADP-ribosylglycohydrolase YegU (EC 3.2.-.-) compare
Pf1N1B4_2912 -1.4 -2.1 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_883 -1.4 -1.7 Hypothetical nudix hydrolase YeaB compare
Pf1N1B4_2807 -1.3 -2.3 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf1N1B4_2858 -1.3 -8.0 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_2886 -1.3 -8.6 Paraquat-inducible protein B compare
Pf1N1B4_2283 -1.3 -2.2 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf1N1B4_4612 -1.3 -2.4 FIG00954117: hypothetical protein compare
Pf1N1B4_1535 -1.3 -2.8 hypothetical protein compare
Pf1N1B4_1821 -1.2 -9.0 Acetyl-CoA hydrolase (EC 3.1.2.1) conserved
Pf1N1B4_652 -1.2 -6.8 Sensory box histidine kinase compare
Pf1N1B4_1128 -1.2 -2.1 hypothetical protein compare
Pf1N1B4_3191 -1.2 -2.0 FIG00953505: hypothetical protein compare
Pf1N1B4_3985 -1.2 -1.8 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Pf1N1B4_899 -1.2 -1.8 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf1N1B4_106 -1.2 -3.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_1544 -1.2 -5.7 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_3413 -1.2 -1.8 Transcriptional regulator, LysR family compare
Pf1N1B4_2949 -1.1 -2.3 FIG00956396: hypothetical protein compare
Pf1N1B4_2969 -1.1 -7.6 ATPase, AFG1 family compare
Pf1N1B4_3093 -1.1 -1.9 Outer membrane protein H precursor compare
Pf1N1B4_1234 -1.1 -3.2 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_1317 -1.1 -2.5 Sensor histidine kinase/response regulator compare
Pf1N1B4_3782 -1.1 -1.5 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (EC 1.13.11.54) compare
Pf1N1B4_1625 -1.0 -3.3 FIG00956267: hypothetical protein compare
Pf1N1B4_4187 -1.0 -3.7 Probable signal peptide protein compare
Pf1N1B4_4939 -1.0 -2.6 sodium/hydrogen exchanger family protein compare
Pf1N1B4_3111 -1.0 -1.0 tRNA pseudouridine 13 synthase (EC 4.2.1.-) compare
Pf1N1B4_2856 -1.0 -3.2 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_4853 -1.0 -2.3 Glycosyltransferase compare
Pf1N1B4_3742 -1.0 -1.1 Oxidoreductase, zinc-binding compare
Pf1N1B4_5561 -1.0 -2.4 hypothetical protein compare
Pf1N1B4_5512 -1.0 -1.0 hypothetical protein compare
Pf1N1B4_3072 -1.0 -2.8 hypothetical protein compare
Pf1N1B4_2884 -1.0 -3.4 Paraquat-inducible protein A compare
Pf1N1B4_3997 -1.0 -2.6 Uncharacterized protein YtfM precursor compare
Pf1N1B4_1827 -1.0 -3.1 FIG00953482: hypothetical protein compare
Pf1N1B4_644 -1.0 -1.5 Cold shock protein CspC compare
Pf1N1B4_35 -1.0 -2.5 hypothetical protein compare
Pf1N1B4_3927 -1.0 -1.6 hypothetical protein compare
Pf1N1B4_3468 -1.0 -1.6 Negative regulator of flagellin synthesis FlgM compare
Pf1N1B4_2943 -1.0 -2.2 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_1057 -1.0 -2.2 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_683 -1.0 -2.6 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_2178 -1.0 -1.6 Regulator of nucleoside diphosphate kinase compare
Pf1N1B4_3011 -1.0 -2.1 Tyrosine recombinase XerD compare
Pf1N1B4_1749 -0.9 -1.5 Prevent host death protein, Phd antitoxin compare
Pf1N1B4_4151 -0.9 -3.1 FIG00960153: hypothetical protein compare
Pf1N1B4_1 -0.9 -1.3 Colicin V production protein compare
Pf1N1B4_4723 -0.9 -2.4 UPF0141 membrane protein YijP possibly required for phosphoethanolamine modification of lipopolysaccharide compare
Pf1N1B4_1365 -0.9 -2.8 Quaternary ammonium compound-resistance protein SugE compare
Pf1N1B4_2877 -0.9 -4.1 Glycosyltransferase compare
Pf1N1B4_5620 -0.9 -2.0 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf1N1B4_1256 -0.9 -2.6 Transcriptional regulator, LysR family compare
Pf1N1B4_3998 -0.9 -2.9 putative exported protein compare
Pf1N1B4_3836 -0.9 -1.6 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Pf1N1B4_5151 -0.9 -2.0 FIG002283: Isochorismatase family protein compare
Pf1N1B4_5282 -0.9 -2.2 Phage protein compare
Pf1N1B4_1610 -0.9 -2.8 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_4123 -0.9 -1.2 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf1N1B4_2885 -0.9 -3.7 Paraquat-inducible protein A compare
Pf1N1B4_3458 -0.9 -2.3 hypothetical protein compare
Pf1N1B4_4627 -0.9 -1.6 FIG00957600: hypothetical protein compare
Pf1N1B4_3303 -0.9 -2.5 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf1N1B4_3149 -0.9 -0.9 hypothetical protein compare
Pf1N1B4_1874 -0.9 -2.3 FIG00953549: hypothetical protein compare
Pf1N1B4_257 -0.9 -3.6 sensor histidine kinase/response regulator compare
Pf1N1B4_309 -0.8 -2.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_3768 -0.8 -1.8 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_2706 -0.8 -1.9 FIG00954871: hypothetical protein compare
Pf1N1B4_5542 -0.8 -1.2 hypothetical protein compare
Pf1N1B4_5823 -0.8 -1.5 Na(+) H(+) antiporter subunit C compare
Pf1N1B4_4299 -0.8 -2.1 sensor histidine kinase compare
Pf1N1B4_2465 -0.8 -1.8 Two-component response regulator CreB compare
Pf1N1B4_4191 -0.8 -3.5 Bifunctional protein: zinc-containing alcohol dehydrogenase; quinone oxidoreductase ( NADPH:quinone reductase) (EC 1.1.1.-); Similar to arginate lyase compare
Pf1N1B4_2005 -0.8 -1.0 ATP-dependent DNA helicase UvrD/PcrA compare
Pf1N1B4_909 -0.8 -1.9 Ketosteroid isomerase-related protein compare
Pf1N1B4_5072 -0.8 -1.7 Glycerol-3-phosphate regulon repressor compare
Pf1N1B4_539 -0.8 -1.6 Transcriptional regulators compare
Pf1N1B4_6013 -0.8 -2.8 hypothetical protein compare
Pf1N1B4_5533 -0.8 -2.1 cobS protein, putative compare
Pf1N1B4_1131 -0.8 -2.8 L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) compare
Pf1N1B4_2453 -0.8 -1.1 hypothetical protein compare
Pf1N1B4_3145 -0.8 -2.3 Decarboxylase family protein compare
Pf1N1B4_2147 -0.8 -2.5 Putrescine utilization regulator compare
Pf1N1B4_5476 -0.8 -1.4 hypothetical protein compare
Pf1N1B4_131 -0.8 -1.7 hypothetical protein compare
Pf1N1B4_4953 -0.8 -2.1 Selenocysteine-specific translation elongation factor compare
Pf1N1B4_289 -0.8 -6.3 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) compare
Pf1N1B4_2322 -0.8 -1.7 FIG015547: peptidase, M16 family compare
Pf1N1B4_5266 -0.8 -1.3 hypothetical protein compare
Pf1N1B4_3390 -0.7 -1.5 RNA polymerase sigma factor RpoE compare
Pf1N1B4_3795 -0.7 -1.5 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_1262 -0.7 -3.4 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_1654 -0.7 -2.4 hypothetical protein compare
Pf1N1B4_5827 -0.7 -2.4 Na(+) H(+) antiporter subunit G compare
Pf1N1B4_4571 -0.7 -2.0 ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf1N1B4_1653 -0.7 -3.8 Branched-chain amino acid transport protein AzlC compare
Pf1N1B4_578 -0.7 -1.5 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_403 -0.7 -0.9 FIG00965925: hypothetical protein compare
Pf1N1B4_901 -0.7 -1.6 hypothetical protein compare
Pf1N1B4_522 -0.7 -2.0 HlyD family secretion protein compare
Pf1N1B4_32 -0.7 -2.1 Transcriptional regulator, TetR family compare
Pf1N1B4_4553 -0.7 -2.0 FIG00959354: hypothetical protein compare
Pf1N1B4_590 -0.7 -4.6 Phosphogluconate repressor HexR, RpiR family compare
Pf1N1B4_5838 -0.7 -1.2 FIG00956589: hypothetical protein compare
Pf1N1B4_1403 -0.7 -3.5 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_5346 -0.7 -1.5 hypothetical protein compare
Pf1N1B4_381 -0.7 -1.4 hypothetical protein compare
Pf1N1B4_1590 -0.7 -3.0 Histidine utilization repressor compare
Pf1N1B4_1721 -0.7 -1.5 DNA-binding heavy metal response regulator compare
Pf1N1B4_1993 -0.7 -1.1 C4-type zinc finger protein, DksA/TraR family compare
Pf1N1B4_4145 -0.7 -1.5 hypothetical protein compare
Pf1N1B4_4208 -0.7 -1.2 organophosphate pesticide hydrolase compare
Pf1N1B4_5549 -0.7 -1.8 hypothetical protein compare
Pf1N1B4_3038 -0.7 -3.6 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf1N1B4_3849 -0.7 -2.1 Transcriptional regulator, GntR family compare
Pf1N1B4_324 -0.7 -1.1 Glycosyl transferase, group 2 family protein compare
Pf1N1B4_4336 -0.7 -1.8 FMN-dependent NADH-azoreductase compare
Pf1N1B4_4824 -0.7 -1.4 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) compare
Pf1N1B4_1695 -0.7 -1.1 Cystine ABC transporter, ATP-binding protein compare
Pf1N1B4_4889 -0.7 -3.1 Cystathionine beta-synthase (EC 4.2.1.22) compare
Pf1N1B4_1611 -0.7 -2.1 Nitrogen regulation protein NR(I) compare
Pf1N1B4_6042 -0.7 -2.1 Probable transmembrane protein compare
Pf1N1B4_5479 -0.7 -2.6 hypothetical protein compare
Pf1N1B4_3799 -0.7 -1.9 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source Potassium acetate in Pseudomonas fluorescens FW300-N1B4

For carbon source Potassium acetate across organisms