Experiment set1IT029 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A with Sodium perchlorate monohydrate 6.25 mM

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS14640 +0.9 2.7 UDP-glucose 4-epimerase compare
CA265_RS12665 +0.9 2.0 cold-shock protein compare
CA265_RS03125 +0.7 1.7 hypothetical protein compare
CA265_RS23305 +0.7 1.3 hypothetical protein compare
CA265_RS19465 +0.7 3.3 protein tyrosine phosphatase compare
CA265_RS18530 +0.7 2.2 aspartate aminotransferase family protein compare
CA265_RS21320 +0.6 1.6 hypothetical protein compare
CA265_RS24385 +0.6 1.6 GNAT family N-acetyltransferase compare
CA265_RS24940 +0.6 2.8 hypothetical protein compare
CA265_RS23820 +0.6 0.8 hypothetical protein compare
CA265_RS18495 +0.6 1.1 hypothetical protein compare
CA265_RS04885 +0.6 1.1 tRNA-Gly compare
CA265_RS22805 +0.6 4.1 glycosyl transferase compare
CA265_RS11125 +0.6 3.1 hypothetical protein compare
CA265_RS22370 +0.5 2.8 hypothetical protein compare
CA265_RS00325 +0.5 2.4 hypothetical protein compare
CA265_RS09690 +0.5 2.2 hypothetical protein compare
CA265_RS22800 +0.5 4.2 glycosyl transferase compare
CA265_RS21580 +0.5 2.2 QacE family quaternary ammonium compound efflux SMR transporter compare
CA265_RS19165 +0.5 1.4 serine hydroxymethyltransferase compare
CA265_RS23705 +0.5 2.6 esterase compare
CA265_RS01560 +0.5 1.2 circadian clock protein KaiB compare
CA265_RS19740 +0.5 2.4 gliding motility lipoprotein GldD compare
CA265_RS04640 +0.5 2.9 efflux transporter periplasmic adaptor subunit compare
CA265_RS20440 +0.5 2.9 hypothetical protein compare
CA265_RS00250 +0.5 2.9 oxidoreductase compare
CA265_RS09035 +0.5 2.5 anti-anti-sigma factor compare
CA265_RS03835 +0.5 1.5 hypothetical protein compare
CA265_RS15085 +0.5 2.6 hypothetical protein compare
CA265_RS20315 +0.4 3.7 hypothetical protein compare
CA265_RS19535 +0.4 3.0 hypothetical protein compare
CA265_RS20525 +0.4 0.5 hypothetical protein compare
CA265_RS17285 +0.4 1.4 hypothetical protein compare
CA265_RS04645 +0.4 3.1 cation transporter compare
CA265_RS06585 +0.4 2.3 hypothetical protein compare
CA265_RS24355 +0.4 2.0 transcriptional regulator compare
CA265_RS18115 +0.4 3.3 gliding motility protein GldN compare
CA265_RS13200 +0.4 2.5 phosphatase PAP2 family protein compare
CA265_RS00395 +0.4 1.3 hypothetical protein compare
CA265_RS20095 +0.4 1.4 NADH oxidase compare
CA265_RS19640 +0.4 1.5 hypothetical protein compare
CA265_RS22310 +0.4 2.1 superoxide dismutase compare
CA265_RS09725 +0.4 3.7 tolB protein precursor compare
CA265_RS24605 +0.4 0.8 hypothetical protein compare
CA265_RS21840 +0.4 2.0 phosphohydrolase compare
CA265_RS00585 +0.4 3.5 translocation/assembly module TamB compare
CA265_RS16370 +0.4 1.8 hypothetical protein compare
CA265_RS23985 +0.4 2.6 gliding motility lipoprotein GldB compare
CA265_RS09695 +0.4 1.3 hypothetical protein compare
CA265_RS09970 +0.4 2.5 hypothetical protein compare
CA265_RS02425 +0.4 2.1 GTP cyclohydrolase compare
CA265_RS02795 +0.4 0.8 hypothetical protein compare
CA265_RS09920 +0.4 1.7 protein tyrosine phosphatase compare
CA265_RS09280 +0.4 2.2 diguanylate cyclase compare
CA265_RS05090 +0.4 1.9 hypothetical protein compare
CA265_RS24070 +0.4 2.5 hypothetical protein compare
CA265_RS23265 +0.4 1.3 iron-binding protein compare
CA265_RS21835 +0.4 1.2 hypothetical protein compare
CA265_RS16325 +0.4 0.6 CsbD family protein compare
CA265_RS04635 +0.4 3.5 CusA/CzcA family heavy metal efflux RND transporter compare
CA265_RS03290 +0.4 2.8 gliding motility-associated ABC transporter permease subunit GldF compare
CA265_RS25060 +0.4 1.7 hypothetical protein compare
CA265_RS24430 +0.4 1.6 hypothetical protein compare
CA265_RS03280 +0.4 1.9 hypothetical protein compare
CA265_RS05215 +0.4 1.6 YfcE family phosphodiesterase compare
CA265_RS22355 +0.4 1.9 translation initiation factor compare
CA265_RS15435 +0.4 2.0 glycine transporter (from data) compare
CA265_RS12800 +0.4 1.8 NAD(P)H-dependent oxidoreductase compare
CA265_RS20320 +0.4 3.4 hypothetical protein compare
CA265_RS18120 +0.4 2.8 gliding motility protein GldM compare
CA265_RS05940 +0.4 1.1 hypothetical protein compare
CA265_RS24215 +0.4 2.0 hypothetical protein compare
CA265_RS17125 +0.4 1.4 DNA-binding response regulator compare
CA265_RS13710 +0.4 1.4 hypothetical protein compare
CA265_RS12860 +0.4 1.9 nitroreductase compare
CA265_RS00490 +0.4 2.5 hypothetical protein compare
CA265_RS06655 +0.4 1.9 hypothetical protein compare
CA265_RS11475 +0.4 1.4 hypothetical protein compare
CA265_RS09195 +0.4 2.5 Fis family transcriptional regulator compare
CA265_RS04110 +0.4 2.3 phosphoadenosine phosphosulfate reductase compare
CA265_RS19620 +0.4 1.2 hypothetical protein compare
CA265_RS00830 +0.4 1.1 hypothetical protein compare
CA265_RS05395 +0.4 1.7 heme oxygenase compare
CA265_RS04245 +0.3 1.6 hypothetical protein compare
CA265_RS07590 +0.3 1.2 hypothetical protein compare
CA265_RS09885 +0.3 1.9 hypothetical protein compare
CA265_RS02550 +0.3 1.0 tRNA-Phe compare
CA265_RS20800 +0.3 0.8 hypothetical protein compare
CA265_RS20975 +0.3 1.3 hypothetical protein compare
CA265_RS22305 +0.3 1.5 hypothetical protein compare
CA265_RS07455 +0.3 0.5 hypothetical protein compare
CA265_RS19955 +0.3 1.2 hypothetical protein compare
CA265_RS19800 +0.3 2.1 GLPGLI family protein compare
CA265_RS02315 +0.3 1.0 single-stranded DNA-binding protein compare
CA265_RS22750 +0.3 1.7 hypothetical protein compare
CA265_RS25345 +0.3 1.7 hypothetical protein compare
CA265_RS23270 +0.3 1.9 hypothetical protein compare
CA265_RS20820 +0.3 1.4 transcriptional regulator compare
CA265_RS06310 +0.3 2.1 succinyl-CoA--3-ketoacid-CoA transferase compare
CA265_RS14600 +0.3 2.2 hypothetical protein compare
CA265_RS04655 +0.3 2.3 DNA-binding response regulator compare
CA265_RS07535 +0.3 0.9 ATPase compare
CA265_RS12475 +0.3 1.4 hypothetical protein compare
CA265_RS24700 +0.3 1.3 hypothetical protein compare
CA265_RS04650 +0.3 2.4 two-component sensor histidine kinase compare
CA265_RS13970 +0.3 2.9 hypothetical protein compare
CA265_RS14770 +0.3 1.6 hypothetical protein compare
CA265_RS14825 +0.3 0.9 outer membrane protein assembly factor BamD compare
CA265_RS10545 +0.3 0.7 hypothetical protein compare
CA265_RS16995 +0.3 0.9 hypothetical protein compare
CA265_RS13270 +0.3 1.5 hypothetical protein compare
CA265_RS17220 +0.3 1.8 NAD(P)H-dependent oxidoreductase compare
CA265_RS22985 +0.3 2.5 helicase SNF2 compare
CA265_RS09260 +0.3 1.9 hypothetical protein compare
CA265_RS19140 +0.3 0.8 tRNA-Ile compare
CA265_RS20880 +0.3 1.4 hypothetical protein compare
CA265_RS15550 +0.3 1.4 hypothetical protein compare
CA265_RS14570 +0.3 1.6 aminoacyl-tRNA hydrolase compare
CA265_RS11930 +0.3 2.0 hypothetical protein compare
CA265_RS20350 +0.3 1.6 gliding motility lipoprotein GldH compare
CA265_RS24025 +0.3 1.7 hypothetical protein compare
CA265_RS10400 +0.3 1.9 histone H1 compare
CA265_RS10540 +0.3 0.6 dinitrogenase iron-molybdenum cofactor biosynthesis protein compare
CA265_RS24650 +0.3 1.2 beta-phosphoglucomutase compare
CA265_RS25395 +0.3 1.7 cysteine hydrolase compare
CA265_RS14000 +0.3 0.9 DNA alkylation repair protein compare
CA265_RS23515 +0.3 1.4 hypothetical protein compare
CA265_RS03235 +0.3 1.3 hypothetical protein compare
CA265_RS04560 +0.3 0.7 hypothetical protein compare
CA265_RS22415 +0.3 2.0 hypothetical protein compare
CA265_RS16070 +0.3 2.1 peptide-N-glycosidase compare
CA265_RS24530 +0.3 1.9 hypothetical protein compare
CA265_RS06005 +0.3 1.9 transposase compare
CA265_RS14285 +0.3 1.8 hypothetical protein compare
CA265_RS17635 +0.3 1.7 hypothetical protein compare
CA265_RS25050 +0.3 1.4 hypothetical protein compare
CA265_RS00975 +0.3 1.7 hypothetical protein compare
CA265_RS09760 +0.3 2.0 dethiobiotin synthase compare
CA265_RS03260 +0.3 1.8 multidrug ABC transporter ATP-binding protein compare
CA265_RS05775 +0.3 1.6 hypothetical protein compare
CA265_RS08965 +0.3 1.8 thioesterase compare
CA265_RS24220 +0.3 1.7 hypothetical protein compare
CA265_RS09730 +0.3 2.2 subclass B3 metallo-beta-lactamase compare
CA265_RS25150 +0.3 1.7 hypothetical protein compare
CA265_RS16990 +0.3 1.3 hypothetical protein compare
CA265_RS22395 +0.3 1.0 VOC family virulence protein compare
CA265_RS09810 +0.3 1.9 glucose-6-phosphate dehydrogenase compare
CA265_RS01835 +0.3 1.8 hypothetical protein compare
CA265_RS15830 +0.3 1.5 3-isopropylmalate dehydratase large subunit compare
CA265_RS00380 +0.3 1.2 hypothetical protein compare
CA265_RS22790 +0.3 1.7 hypothetical protein compare
CA265_RS05570 +0.3 1.5 hypothetical protein compare
CA265_RS20965 +0.3 1.3 5'(3')-deoxyribonucleotidase compare
CA265_RS18725 +0.3 1.1 short-chain dehydrogenase compare
CA265_RS02105 +0.3 1.5 hypothetical protein compare
CA265_RS00295 +0.3 1.6 hypothetical protein compare
CA265_RS06930 +0.3 1.4 hypothetical protein compare
CA265_RS02670 +0.3 1.0 thymidine kinase compare
CA265_RS19785 +0.3 1.4 hypothetical protein compare
CA265_RS22745 +0.3 1.2 hypothetical protein compare
CA265_RS25020 +0.3 1.2 NADH:ubiquinone oxidoreductase compare
CA265_RS19655 +0.3 1.0 carboxymuconolactone decarboxylase family protein compare
CA265_RS07785 +0.3 1.4 hypothetical protein compare
CA265_RS01095 +0.3 1.6 transcriptional regulator compare
CA265_RS22970 +0.3 1.6 hypothetical protein compare
CA265_RS00160 +0.3 1.6 hypothetical protein compare
CA265_RS12960 +0.3 1.8 DUF4440 domain-containing protein compare
CA265_RS15115 +0.3 1.7 porin compare
CA265_RS14935 +0.3 2.3 hypothetical protein compare
CA265_RS18875 +0.3 1.9 hypothetical protein compare
CA265_RS22285 +0.3 1.5 LysR family transcriptional regulator compare
CA265_RS06405 +0.3 0.6 hypothetical protein compare
CA265_RS22065 +0.3 1.4 hypothetical protein compare
CA265_RS00115 +0.3 1.4 hypothetical protein compare
CA265_RS12370 +0.3 1.8 alpha/beta hydrolase compare
CA265_RS11675 +0.3 1.9 aspartate aminotransferase compare
CA265_RS21525 +0.3 1.2 hypothetical protein compare
CA265_RS16985 +0.3 0.8 hypothetical protein compare
CA265_RS20570 +0.3 1.5 hypothetical protein compare
CA265_RS15415 +0.3 1.8 GNAT family N-acetyltransferase compare
CA265_RS21365 +0.3 0.9 thiol reductase thioredoxin compare
CA265_RS16295 +0.3 1.6 LacI family transcriptional regulator compare
CA265_RS06010 +0.3 1.1 hypothetical protein compare
CA265_RS03070 +0.3 1.0 sec-independent protein translocase TatC compare
CA265_RS16565 +0.3 1.2 hypothetical protein compare
CA265_RS00420 +0.3 0.9 FUSC family protein compare
CA265_RS10480 +0.3 0.8 hypothetical protein compare
CA265_RS16215 +0.3 1.3 hypothetical protein compare
CA265_RS20750 +0.2 0.7 hypothetical protein compare
CA265_RS01460 +0.2 1.5 hypothetical protein compare
CA265_RS01770 +0.2 0.9 hypothetical protein compare
CA265_RS14390 +0.2 1.1 hypothetical protein compare
CA265_RS23680 +0.2 1.7 hypothetical protein compare
CA265_RS25180 +0.2 1.4 hypothetical protein compare
CA265_RS01565 +0.2 1.0 circadian clock protein KaiB compare
CA265_RS00875 +0.2 1.3 alkaline phosphatase compare
CA265_RS23130 +0.2 1.7 ABC transporter permease compare
CA265_RS04100 +0.2 1.3 uroporphyrinogen-III C-methyltransferase compare
CA265_RS23980 +0.2 1.8 patatin compare
CA265_RS17720 +0.2 2.0 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pedobacter sp. GW460-11-11-14-LB5 in stress experiments

For stress Sodium perchlorate monohydrate across organisms