Experiment set1IT028 for Pseudomonas fluorescens FW300-N1B4

Compare to:

D-Gluconic Acid sodium salt carbon source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_15 -4.2 -4.0 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_1627 -4.0 -3.9 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_2880 -3.7 -11.4 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_1534 -3.6 -17.4 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_1831 -3.5 -11.4 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_1624 -3.3 -8.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_1067 -3.2 -5.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_2303 -3.2 -14.4 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_742 -3.2 -8.8 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_5665 -3.2 -6.0 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_6 -3.2 -5.6 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_2545 -3.2 -13.8 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_2272 -3.1 -4.2 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_1533 -3.1 -8.1 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_3697 -3.1 -9.5 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_2549 -3.0 -9.7 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_58 -3.0 -6.5 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_350 -3.0 -7.3 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_2384 -3.0 -9.4 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_2548 -2.9 -7.0 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_5666 -2.9 -3.8 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_1830 -2.9 -8.9 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_1307 -2.8 -2.7 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_12 -2.8 -7.4 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2282 -2.8 -9.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_762 -2.7 -6.7 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_2112 -2.7 -14.3 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_2010 -2.7 -6.5 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_1315 -2.7 -8.7 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_2879 -2.7 -7.8 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_1565 -2.7 -5.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_2338 -2.7 -7.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_2547 -2.7 -3.6 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_1626 -2.6 -7.7 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_1434 -2.6 -8.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_1408 -2.6 -5.1 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_2878 -2.6 -8.5 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_2009 -2.6 -5.7 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_2337 -2.6 -5.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_2858 -2.5 -11.3 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_2011 -2.5 -9.5 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_3518 -2.5 -3.9 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_2912 -2.4 -2.3 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_847 -2.4 -8.6 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_4065 -2.4 -8.2 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_3506 -2.4 -7.9 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_3812 -2.1 -7.7 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_1617 -2.0 -7.4 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_5059 -2.0 -3.0 Transcriptional regulator, LysR family compare
Pf1N1B4_2850 -2.0 -7.6 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_4035 -1.8 -2.5 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_2485 -1.7 -2.7 Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy compare
Pf1N1B4_3508 -1.7 -4.3 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_348 -1.7 -4.4 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_3153 -1.7 -2.4 hypothetical protein compare
Pf1N1B4_556 -1.6 -3.4 Gluconate permease compare
Pf1N1B4_2280 -1.6 -7.4 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_2488 -1.6 -7.0 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_1191 -1.6 -2.4 hypothetical protein compare
Pf1N1B4_2491 -1.6 -3.7 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_1 -1.6 -2.5 Colicin V production protein compare
Pf1N1B4_3833 -1.6 -6.5 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_1625 -1.5 -3.2 FIG00956267: hypothetical protein compare
Pf1N1B4_3081 -1.5 -12.9 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_2674 -1.5 -2.2 hypothetical protein compare
Pf1N1B4_5699 -1.5 -2.1 ABC-type uncharacterized transport system, ATPase component compare
Pf1N1B4_4103 -1.5 -2.6 Flagellar synthesis regulator FleN compare
Pf1N1B4_1057 -1.4 -2.9 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_2486 -1.4 -2.1 hypothetical protein compare
Pf1N1B4_27 -1.4 -4.4 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_4446 -1.4 -2.6 DNA topoisomerase III (EC 5.99.1.2) compare
Pf1N1B4_603 -1.4 -3.2 Methylglyoxal synthase (EC 4.2.3.3) compare
Pf1N1B4_1610 -1.4 -3.4 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_3325 -1.4 -2.3 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_1906 -1.4 -3.2 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_4028 -1.3 -3.4 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_2377 -1.3 -5.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_4029 -1.3 -3.0 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_2487 -1.3 -6.6 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_1566 -1.3 -5.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_3126 -1.3 -2.7 Phage tail length tape-measure protein compare
Pf1N1B4_1568 -1.3 -2.7 Twin-arginine translocation protein TatB compare
Pf1N1B4_1535 -1.3 -2.8 hypothetical protein compare
Pf1N1B4_412 -1.3 -2.5 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf1N1B4_522 -1.3 -3.0 HlyD family secretion protein compare
Pf1N1B4_381 -1.3 -2.1 hypothetical protein compare
Pf1N1B4_5451 -1.2 -2.2 hypothetical protein compare
Pf1N1B4_4038 -1.2 -1.7 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_2682 -1.2 -1.8 Antiholin-like protein LrgA compare
Pf1N1B4_4030 -1.2 -2.1 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_652 -1.2 -6.2 Sensory box histidine kinase compare
Pf1N1B4_4299 -1.2 -2.7 sensor histidine kinase compare
Pf1N1B4_5187 -1.2 -1.5 5S RNA compare
Pf1N1B4_175 -1.2 -2.0 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_1492 -1.1 -1.6 FIG00959437: hypothetical protein compare
Pf1N1B4_2859 -1.1 -8.1 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_479 -1.1 -2.4 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf1N1B4_3078 -1.1 -2.1 FIG138056: a glutathione-dependent thiol reductase compare
Pf1N1B4_3445 -1.1 -2.9 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf1N1B4_5512 -1.1 -1.8 hypothetical protein compare
Pf1N1B4_3656 -1.1 -2.3 Eukaryotic-type low-affinity urea transporter compare
Pf1N1B4_3768 -1.1 -2.2 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_3866 -1.1 -1.9 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf1N1B4_407 -1.1 -1.7 ADP-ribosylglycohydrolase YegU (EC 3.2.-.-) compare
Pf1N1B4_2489 -1.1 -4.1 Biotin synthesis protein BioH compare
Pf1N1B4_3241 -1.1 -1.9 hypothetical protein compare
Pf1N1B4_4359 -1.0 -2.7 PvcA protein, related to known isonitrile synthases compare
Pf1N1B4_131 -1.0 -1.9 hypothetical protein compare
Pf1N1B4_106 -1.0 -2.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_3531 -1.0 -2.0 FIG039061: hypothetical protein related to heme utilization compare
Pf1N1B4_4476 -1.0 -2.9 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf1N1B4_1329 -1.0 -3.9 Cobalamin biosynthesis protein CobG compare
Pf1N1B4_2526 -1.0 -7.8 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_430 -1.0 -1.8 hypothetical protein compare
Pf1N1B4_716 -1.0 -2.8 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites compare
Pf1N1B4_678 -1.0 -4.8 Pyruvate kinase (EC 2.7.1.40) compare
Pf1N1B4_1975 -1.0 -2.2 Transcriptional regulator, AsnC family compare
Pf1N1B4_1528 -1.0 -2.1 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_4957 -1.0 -2.0 Transcriptional regulator, TetR family compare
Pf1N1B4_875 -1.0 -1.5 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_3613 -1.0 -1.7 hypothetical protein compare
Pf1N1B4_5448 -1.0 -1.5 hypothetical protein compare
Pf1N1B4_5997 -1.0 -2.2 Taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_4040 -1.0 -1.8 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_5659 -1.0 -6.0 NfuA Fe-S protein maturation compare
Pf1N1B4_1971 -0.9 -2.4 SAM-dependent methyltransferases compare
Pf1N1B4_1611 -0.9 -3.4 Nitrogen regulation protein NR(I) compare
Pf1N1B4_1003 -0.9 -1.5 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_3372 -0.9 -2.0 FIG00962464: hypothetical protein compare
Pf1N1B4_3980 -0.9 -2.1 Transcriptional regulator, HxlR family compare
Pf1N1B4_5661 -0.9 -4.7 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf1N1B4_240 -0.9 -1.1 Transcriptional regulators compare
Pf1N1B4_4295 -0.9 -2.2 FIG00954434: hypothetical protein compare
Pf1N1B4_4740 -0.9 -1.6 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_3451 -0.9 -2.2 Aspartokinase (EC 2.7.2.4) compare
Pf1N1B4_1475 -0.9 -2.6 FIG00962376: hypothetical protein compare
Pf1N1B4_197 -0.9 -1.7 FIG139991: Putative thiamine pyrophosphate-requiring enzyme compare
Pf1N1B4_4570 -0.9 -2.1 Probable carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23) compare
Pf1N1B4_1995 -0.8 -2.4 FIG00954044: hypothetical protein compare
Pf1N1B4_3528 -0.8 -3.6 Putative membrane protein compare
Pf1N1B4_3264 -0.8 -2.6 Methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_3351 -0.8 -2.0 FIG00954302: hypothetical protein compare
Pf1N1B4_1632 -0.8 -2.8 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf1N1B4_6041 -0.8 -1.5 Carbon storage regulator compare
Pf1N1B4_4632 -0.8 -2.5 Exonuclease SbcC compare
Pf1N1B4_2035 -0.8 -3.0 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf1N1B4_4849 -0.8 -1.6 Various polyols ABC transporter, permease component 1 compare
Pf1N1B4_5552 -0.8 -1.3 hypothetical protein compare
Pf1N1B4_650 -0.8 -2.9 FIG001943: hypothetical protein YajQ compare
Pf1N1B4_2490 -0.8 -3.5 Biotin synthesis protein BioC compare
Pf1N1B4_5415 -0.8 -2.2 hypothetical protein compare
Pf1N1B4_4669 -0.8 -1.2 Heavy metal RND efflux outer membrane protein, CzcC family compare
Pf1N1B4_3799 -0.8 -1.9 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) compare
Pf1N1B4_2209 -0.8 -4.6 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_4004 -0.8 -1.9 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) compare
Pf1N1B4_5383 -0.8 -4.7 hypothetical protein compare
Pf1N1B4_6031 -0.8 -2.6 Ribokinase (EC 2.7.1.15) (from data) compare
Pf1N1B4_683 -0.8 -2.2 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_1317 -0.8 -1.7 Sensor histidine kinase/response regulator compare
Pf1N1B4_4969 -0.8 -1.6 FIG00956189: hypothetical protein compare
Pf1N1B4_3709 -0.8 -2.3 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf1N1B4_5151 -0.8 -1.9 FIG002283: Isochorismatase family protein compare
Pf1N1B4_5137 -0.8 -4.0 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf1N1B4_4975 -0.8 -2.3 hypothetical protein compare
Pf1N1B4_2008 -0.8 -4.6 Phosphogluconate repressor HexR, RpiR family compare
Pf1N1B4_3594 -0.8 -1.7 Flagellin protein FlaA compare
Pf1N1B4_2870 -0.8 -1.4 Regulator of competence-specific genes compare
Pf1N1B4_929 -0.8 -1.8 FIG00964214: hypothetical protein compare
Pf1N1B4_4293 -0.8 -2.4 hypothetical protein compare
Pf1N1B4_4585 -0.8 -2.0 Putative Isoquinoline 1-oxidoreductase subunit, Mll3835 protein compare
Pf1N1B4_4853 -0.7 -1.7 Glycosyltransferase compare
Pf1N1B4_4473 -0.7 -1.7 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_4797 -0.7 -2.0 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf1N1B4_1328 -0.7 -1.5 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_2857 -0.7 -2.1 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_1662 -0.7 -2.3 N-carbamoylputrescine amidase (3.5.1.53) / Aliphatic amidase AmiE (EC 3.5.1.4) compare
Pf1N1B4_2163 -0.7 -1.0 hypothetical protein compare
Pf1N1B4_239 -0.7 -2.1 Similar to ribosomal large subunit pseudouridine synthase A compare
Pf1N1B4_1998 -0.7 -2.4 Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family compare
Pf1N1B4_5278 -0.7 -1.1 hypothetical protein compare
Pf1N1B4_4596 -0.7 -1.7 Hydroxyacylglutathione hydrolase (EC 3.1.2.6) compare
Pf1N1B4_4041 -0.7 -2.1 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_2948 -0.7 -1.8 FIG00954698: hypothetical protein compare
Pf1N1B4_3993 -0.7 -1.9 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf1N1B4_4857 -0.7 -3.2 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_1570 -0.7 -2.1 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf1N1B4_2856 -0.7 -2.3 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_4961 -0.7 -2.0 FIG00441227: hypothetical protein compare
Pf1N1B4_4872 -0.7 -1.4 Short-chain dehydrogenase/reductase SDR compare
Pf1N1B4_3724 -0.7 -3.3 DNA recombination protein RmuC compare
Pf1N1B4_4550 -0.7 -1.7 beta-ketoacyl synthase, putative compare
Pf1N1B4_4494 -0.7 -2.2 hypothetical protein compare
Pf1N1B4_13 -0.7 -1.8 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf1N1B4_4039 -0.7 -3.2 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_4870 -0.7 -1.2 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf1N1B4_1403 -0.7 -3.5 3'-to-5' exoribonuclease RNase R compare
Pf1N1B4_115 -0.7 -1.3 Membrane protein mosC compare
Pf1N1B4_539 -0.7 -1.4 Transcriptional regulators compare
Pf1N1B4_2418 -0.7 -2.8 HTH-type transcriptional regulator BetI compare
Pf1N1B4_2114 -0.7 -3.0 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in carbon source experiments

For carbon source D-Gluconic Acid sodium salt across organisms