Experiment set1IT028 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with Choline chloride 10 mM

200 most detrimental genes:

  gene name fitness t score description  
Ga0059261_0208 +1.2 5.3 Response regulator receiver domain compare
Ga0059261_3579 +1.0 6.5 hypothetical protein compare
Ga0059261_3490 +1.0 6.0 Response regulator receiver domain/Sigma-70, region 4 compare
Ga0059261_1860 +0.9 2.3 Transposase compare
Ga0059261_3492 +0.8 4.8 RNA polymerase sigma factor, sigma-70 family compare
Ga0059261_3581 +0.7 3.9 Alpha/beta hydrolase family compare
Ga0059261_0252 +0.6 2.4 SpoIIAA-like compare
Ga0059261_0957 +0.6 1.8 Protein of unknown function (DUF2798) compare
Ga0059261_2471 +0.6 1.5 hypothetical protein compare
Ga0059261_0357 +0.6 2.2 hypothetical protein compare
Ga0059261_0340 +0.6 2.2 Bacterial protein of unknown function (DUF937) compare
Ga0059261_0931 +0.5 1.6 molybdenum cofactor biosynthesis protein MoaC compare
Ga0059261_1574 +0.5 1.1 Superfamily II DNA and RNA helicases compare
Ga0059261_0757 +0.5 1.6 Predicted transcriptional regulators compare
Ga0059261_3635 +0.5 2.3 Predicted integral membrane protein compare
Ga0059261_1837 +0.5 1.3 Staphylococcal nuclease homologue compare
Ga0059261_0781 +0.5 1.5 hypothetical protein compare
Ga0059261_3556 +0.5 1.5 transcriptional regulator, TetR family compare
Ga0059261_0448 +0.5 1.2 hypothetical protein compare
Ga0059261_0690 +0.5 1.5 Acetyltransferases compare
Ga0059261_0464 +0.5 1.3 hypothetical protein compare
Ga0059261_3287 +0.5 3.4 Topoisomerase IB compare
Ga0059261_4051 +0.4 2.2 Transcriptional regulator compare
Ga0059261_1612 +0.4 0.7 hypothetical protein compare
Ga0059261_3491 +0.4 3.0 hypothetical protein compare
Ga0059261_1768 +0.4 1.0 Sigma-70 region 2 compare
Ga0059261_2774 +0.4 1.4 Transcription elongation factor compare
Ga0059261_0035 +0.4 1.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_0199 +0.4 2.2 hypothetical protein compare
Ga0059261_4203 +0.4 2.4 Arabinose efflux permease compare
Ga0059261_1904 +0.4 1.5 Asparaginase compare
Ga0059261_0379 +0.4 1.8 DNA binding domain, excisionase family compare
Ga0059261_1862 +0.4 1.4 Transposase compare
Ga0059261_0161 +0.4 1.2 molybdopterin converting factor, subunit 1, non-archaeal compare
Ga0059261_0621 +0.4 1.8 cob(I)yrinic acid a,c-diamide adenosyltransferase (EC 2.5.1.17) compare
Ga0059261_2128 +0.4 1.8 Predicted membrane protein compare
Ga0059261_3174 +0.4 1.7 EF hand compare
Ga0059261_4139 +0.4 1.3 hypothetical protein compare
Ga0059261_1530 +0.4 1.5 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Ga0059261_3171 +0.4 2.4 Domain of unknown function (DUF4126) compare
Ga0059261_2285 +0.4 0.9 Fe2+ transport system protein A compare
Ga0059261_3720 +0.4 1.3 Integral membrane protein CcmA involved in cell shape determination compare
Ga0059261_0869 +0.4 2.0 Acyl-CoA thioesterase compare
Ga0059261_3507 +0.4 3.3 His Kinase A (phospho-acceptor) domain/Response regulator receiver domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase/CHASE3 domain compare
Ga0059261_2933 +0.4 2.2 hypothetical protein compare
Ga0059261_2713 +0.4 1.0 hypothetical protein compare
Ga0059261_2342 +0.4 2.2 hypothetical protein compare
Ga0059261_2361 +0.4 2.0 Staphylococcal nuclease homologue compare
Ga0059261_1588 +0.4 2.4 Methyltransferase domain compare
Ga0059261_0850 +0.4 1.2 hypothetical protein compare
Ga0059261_2255 +0.3 1.7 nitrogen regulatory protein P-II family compare
Ga0059261_1772 +0.3 1.1 MobA/MobL family compare
Ga0059261_2528 +0.3 1.4 Uncharacterized conserved protein compare
Ga0059261_2914 +0.3 1.1 Type IV secretory pathway, TrbD component compare
Ga0059261_3432 +0.3 1.6 leucyl/phenylalanyl-tRNA--protein transferase compare
Ga0059261_4222 +0.3 2.5 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_3572 +0.3 2.3 YCII-related domain compare
Ga0059261_0726 +0.3 0.8 hypothetical protein compare
Ga0059261_1381 +0.3 1.7 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_0298 +0.3 2.3 TonB family C-terminal domain compare
Ga0059261_4240 +0.3 1.5 hypothetical protein compare
Ga0059261_1300 +0.3 1.6 hypothetical protein compare
Ga0059261_2684 +0.3 1.2 hypothetical protein compare
Ga0059261_1126 +0.3 1.3 Response regulator compare
Ga0059261_1577 +0.3 2.8 L-glutamine and L-histidine transporter (from data) compare
Ga0059261_3947 +0.3 1.0 type II secretion system protein I (GspI) compare
Ga0059261_0816 +0.3 0.9 hypothetical protein compare
Ga0059261_1521 +0.3 2.1 diguanylate cyclase (GGDEF) domain compare
Ga0059261_3222 +0.3 1.8 adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Ga0059261_3238 +0.3 1.3 hypothetical protein compare
Ga0059261_1958 +0.3 1.6 Transcriptional regulators compare
Ga0059261_3756 +0.3 2.4 Predicted nucleoside-diphosphate-sugar epimerases compare
Ga0059261_1117 +0.3 2.2 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain compare
Ga0059261_0625 +0.3 1.2 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
Ga0059261_1587 +0.3 1.8 hypothetical protein compare
Ga0059261_1811 +0.3 1.1 ATP:cob(I)alamin adenosyltransferase compare
Ga0059261_0244 +0.3 1.2 FOG: CheY-like receiver compare
Ga0059261_3016 +0.3 0.9 hypothetical protein compare
Ga0059261_0894 +0.3 1.8 hypothetical protein compare
Ga0059261_2691 +0.3 1.5 Zn-dependent dipeptidase, microsomal dipeptidase homolog compare
Ga0059261_0720 +0.3 1.2 Predicted small integral membrane protein compare
Ga0059261_1336 +0.3 2.3 transcriptional regulator, HxlR family compare
Ga0059261_1508 +0.3 2.0 Tetratricopeptide repeat compare
Ga0059261_3674 +0.3 2.2 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Ga0059261_3770 +0.3 2.0 Beta-lactamase class A compare
Ga0059261_2882 +0.3 1.8 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Ga0059261_3799 +0.3 1.1 hypothetical protein compare
Ga0059261_4060 +0.3 0.8 Predicted membrane protein compare
Ga0059261_2132 +0.3 0.8 transcriptional regulator, BadM/Rrf2 family compare
Ga0059261_3134 +0.3 2.2 hypothetical protein compare
Ga0059261_1546 +0.3 1.9 MerC mercury resistance protein compare
Ga0059261_4142 +0.3 1.6 hypothetical protein compare
Ga0059261_3227 +0.3 0.7 GTP-binding protein YchF compare
Ga0059261_2658 +0.3 1.3 Transcriptional regulators compare
Ga0059261_3445 +0.3 1.7 PHP domain compare
Ga0059261_4225 +0.3 1.5 3-isopropylmalate dehydratase, small subunit compare
Ga0059261_3168 +0.3 1.5 peroxiredoxin, OsmC subfamily compare
Ga0059261_1714 +0.3 1.9 translation initiation factor IF-1 compare
Ga0059261_1597 +0.3 1.9 hypothetical protein compare
Ga0059261_3802 +0.3 2.0 Phosphate transport regulator (distant homolog of PhoU) compare
Ga0059261_3764 +0.3 1.9 Bacterial lipocalin compare
Ga0059261_3992 +0.3 1.0 Uncharacterized protein conserved in bacteria compare
Ga0059261_1519 +0.3 1.4 NUDIX domain compare
Ga0059261_0366 +0.3 1.7 Predicted integral membrane protein compare
Ga0059261_2965 +0.3 1.7 Sugar kinases, ribokinase family compare
Ga0059261_4044 +0.3 1.5 FOG: EAL domain compare
Ga0059261_2570 +0.3 0.9 Type IV secretory pathway, TrbD component compare
Ga0059261_0305 +0.3 1.2 bacterioferritin compare
Ga0059261_0239 +0.3 0.6 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
Ga0059261_2042 +0.3 1.9 Galactose mutarotase and related enzymes compare
Ga0059261_1122 +0.3 0.9 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Ga0059261_3722 +0.3 1.7 Methyltransferase domain compare
Ga0059261_3216 +0.3 1.1 Acetyltransferases compare
Ga0059261_3772 +0.3 1.4 NIPSNAP compare
Ga0059261_2928 +0.3 1.3 oxygen-dependent methionine synthase, putative oxygenase component MesX (from data) compare
Ga0059261_1185 +0.3 1.4 Thiolase, C-terminal domain compare
Ga0059261_1599 +0.3 2.2 Uncharacterized conserved protein compare
Ga0059261_0746 +0.3 1.9 Predicted permease, DMT superfamily compare
Ga0059261_3859 +0.3 0.8 MgtC family compare
Ga0059261_3518 +0.3 2.2 RND family efflux transporter, MFP subunit compare
Ga0059261_0030 +0.3 1.7 Acetyltransferases, including N-acetylases of ribosomal proteins compare
Ga0059261_0688 +0.3 1.7 Domain of unknown function (DUF4136) compare
Ga0059261_3257 +0.3 1.5 glycine cleavage system H protein compare
Ga0059261_1606 +0.3 1.7 Domain of unknown function (DUF4281) compare
Ga0059261_2580 +0.3 1.6 transcriptional regulator, AlpA family compare
Ga0059261_2886 +0.3 1.1 electron transfer flavoprotein beta subunit compare
Ga0059261_2234 +0.3 1.6 Glycerol-3-phosphate dehydrogenase compare
Ga0059261_1046 +0.3 1.6 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Ga0059261_3605 +0.2 1.0 tRNA compare
Ga0059261_1598 +0.2 2.2 hypothetical protein compare
Ga0059261_3977 +0.2 1.8 Uncharacterized protein involved in formation of curli polymers compare
Ga0059261_1049 +0.2 1.4 PEP-CTERM protein-sorting domain compare
Ga0059261_3573 +0.2 1.8 Bacterial PH domain compare
Ga0059261_2802 +0.2 2.0 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Ga0059261_1488 +0.2 1.9 Uncharacterized protein conserved in bacteria compare
Ga0059261_1380 +0.2 1.8 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_0219 +0.2 1.9 Lactate dehydrogenase and related dehydrogenases compare
Ga0059261_0447 +0.2 1.4 SnoaL-like domain compare
Ga0059261_0864 +0.2 0.9 hypothetical protein compare
Ga0059261_0963 +0.2 1.1 hypothetical protein compare
Ga0059261_0629 +0.2 1.6 cobalamin biosynthesis protein CobD compare
Ga0059261_1167 +0.2 2.0 transcriptional regulator, LacI family compare
Ga0059261_1087 +0.2 1.0 hypothetical protein compare
Ga0059261_4185 +0.2 0.5 hypothetical protein compare
Ga0059261_1878 +0.2 1.4 RND family efflux transporter, MFP subunit compare
Ga0059261_3994 +0.2 1.4 hypothetical protein compare
Ga0059261_0750 +0.2 1.3 NADH:ubiquinone oxidoreductase subunit 3 (chain A) compare
Ga0059261_2365 +0.2 0.7 Mu-like prophage FluMu protein gp41 compare
Ga0059261_1743 +0.2 0.5 hypothetical protein compare
Ga0059261_1923 +0.2 1.1 hypothetical protein compare
Ga0059261_2956 +0.2 1.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Ga0059261_0993 +0.2 0.6 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Ga0059261_3617 +0.2 1.7 hypothetical protein compare
Ga0059261_3554 +0.2 1.4 Uncharacterized protein conserved in bacteria compare
Ga0059261_3765 +0.2 1.9 hypothetical protein compare
Ga0059261_0592 +0.2 1.1 hypothetical protein compare
Ga0059261_0024 +0.2 1.5 Predicted membrane protein compare
Ga0059261_0062 +0.2 0.8 hypothetical protein compare
Ga0059261_1535 +0.2 1.6 Predicted transcriptional regulators compare
Ga0059261_4217 +0.2 0.6 hypothetical protein compare
Ga0059261_4228 +0.2 0.9 hypothetical protein compare
Ga0059261_4231 +0.2 1.8 Predicted periplasmic protein compare
Ga0059261_2054 +0.2 1.7 Response regulator receiver domain compare
Ga0059261_3701 +0.2 1.9 Pirin-related protein compare
Ga0059261_3915 +0.2 1.2 hypothetical protein compare
Ga0059261_2387 +0.2 1.7 HIRAN domain compare
Ga0059261_4166 +0.2 1.7 hypothetical protein compare
Ga0059261_0662 +0.2 1.2 Truncated hemoglobins compare
Ga0059261_2534 +0.2 1.0 3-hydroxyacyl-CoA dehydrogenase compare
Ga0059261_2461 +0.2 1.4 hypothetical protein compare
Ga0059261_1756 +0.2 0.7 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes compare
Ga0059261_0651 +0.2 1.2 Methylase of chemotaxis methyl-accepting proteins compare
Ga0059261_4083 +0.2 1.0 two component transcriptional regulator, LuxR family compare
Ga0059261_4048 +0.2 1.6 Domain of unknown function (DUF3315) compare
Ga0059261_2977 +0.2 1.8 Sugar phosphate permease compare
Ga0059261_4032 +0.2 1.3 Sensors of blue-light using FAD compare
Ga0059261_1037 +0.2 1.4 hypothetical protein compare
Ga0059261_2448 +0.2 0.7 DNA protecting protein DprA compare
Ga0059261_0315 +0.2 1.1 transcriptional regulator, Spx/MgsR family compare
Ga0059261_4167 +0.2 1.6 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Ga0059261_3165 +0.2 1.3 PEP phosphonomutase and related enzymes compare
Ga0059261_1536 +0.2 1.6 Glutathione S-transferase compare
Ga0059261_2568 +0.2 1.0 P-type conjugative transfer protein TrbJ compare
Ga0059261_3056 +0.2 0.9 Protein of unknown function (DUF2958) compare
Ga0059261_1585 +0.2 1.9 Major Facilitator Superfamily compare
Ga0059261_2706 +0.2 1.4 CAAX protease self-immunity compare
Ga0059261_2350 +0.2 0.4 hypothetical protein compare
Ga0059261_1620 +0.2 1.6 Predicted S-adenosylmethionine-dependent methyltransferase compare
Ga0059261_1739 +0.2 1.1 Conjugal transfer protein TraD compare
Ga0059261_1652 +0.2 0.4 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily compare
Ga0059261_3441 +0.2 1.0 hypothetical protein compare
Ga0059261_1617 +0.2 1.4 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases compare
Ga0059261_0333 +0.2 1.6 DNA repair photolyase compare
Ga0059261_0335 +0.2 1.5 Bacterial regulatory proteins, luxR family compare
Ga0059261_1147 +0.2 1.5 Bacterial flagellin N-terminal helical region/Bacterial flagellin C-terminal helical region compare
Ga0059261_1595 +0.2 1.9 Membrane protein involved in the export of O-antigen and teichoic acid compare
Ga0059261_1089 +0.2 1.0 Flagellar hook-length control protein compare
Ga0059261_3630 +0.2 1.5 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Ga0059261_4169 +0.2 0.9 Kef-type K+ transport system, predicted NAD-binding component compare
Ga0059261_3871 +0.2 0.4 formate dehydrogenase family accessory protein FdhD compare


Specific Phenotypes

None in this experiment

For Sphingomonas koreensis DSMZ 15582 in stress experiments

For stress Choline chloride across organisms