Experiment set1IT027 for Pseudomonas fluorescens FW300-N1B4

Compare to:

a-Ketoglutaric acid disodium salt hydrate carbon source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_5666 -4.2 -2.9 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_15 -4.1 -4.0 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_2880 -3.9 -11.1 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_12 -3.6 -7.2 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2547 -3.5 -3.4 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_1831 -3.5 -11.4 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_1533 -3.4 -7.3 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_1624 -3.4 -9.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_2338 -3.4 -7.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_742 -3.3 -7.7 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_2549 -3.3 -9.8 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_2545 -3.3 -13.1 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_1534 -3.2 -18.1 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_1830 -3.2 -8.3 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_3697 -3.2 -8.8 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_2303 -3.2 -14.7 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_2879 -3.2 -7.3 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_2272 -3.1 -4.2 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_6 -3.0 -5.7 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_3812 -3.0 -9.0 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_1626 -2.9 -8.0 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_847 -2.9 -9.2 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_686 -2.9 -8.5 Dicarboxylate MFS transporter conserved
Pf1N1B4_2858 -2.9 -11.0 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_762 -2.9 -6.3 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_1434 -2.8 -8.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_1307 -2.8 -2.7 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_1408 -2.7 -4.9 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_684 -2.7 -6.7 C4-dicarboxylate transport sensor protein conserved
Pf1N1B4_2112 -2.7 -13.9 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_5665 -2.7 -5.6 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_2548 -2.7 -6.8 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_1067 -2.7 -5.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_2878 -2.6 -8.3 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_1627 -2.6 -4.9 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_1315 -2.6 -8.1 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_4065 -2.5 -8.3 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_350 -2.5 -7.1 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_1545 -2.4 -10.3 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf1N1B4_2384 -2.4 -10.1 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_1565 -2.4 -5.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_3506 -2.4 -7.3 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_2282 -2.4 -9.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_1617 -2.3 -7.9 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_4612 -2.3 -3.3 FIG00954117: hypothetical protein compare
Pf1N1B4_3917 -2.3 -5.2 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf1N1B4_2859 -2.0 -13.3 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_1317 -2.0 -3.3 Sensor histidine kinase/response regulator compare
Pf1N1B4_275 -1.9 -2.5 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_2337 -1.9 -5.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1 -1.8 -2.5 Colicin V production protein compare
Pf1N1B4_2486 -1.7 -2.8 hypothetical protein compare
Pf1N1B4_27 -1.7 -4.7 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_578 -1.7 -2.2 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_1328 -1.7 -2.9 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_2280 -1.7 -7.3 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_1535 -1.7 -3.4 hypothetical protein compare
Pf1N1B4_327 -1.6 -2.0 hypothetical protein compare
Pf1N1B4_652 -1.6 -7.7 Sensory box histidine kinase compare
Pf1N1B4_1057 -1.6 -2.8 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_5533 -1.5 -3.0 cobS protein, putative compare
Pf1N1B4_1906 -1.5 -3.6 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_3849 -1.5 -4.0 Transcriptional regulator, GntR family compare
Pf1N1B4_5425 -1.5 -1.9 DNA-binding protein HU-beta compare
Pf1N1B4_3906 -1.3 -2.1 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_2874 -1.3 -2.0 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_2958 -1.3 -2.0 Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) compare
Pf1N1B4_1052 -1.3 -2.1 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf1N1B4_3927 -1.2 -1.9 hypothetical protein compare
Pf1N1B4_3985 -1.2 -1.7 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Pf1N1B4_3081 -1.2 -10.1 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_257 -1.2 -4.5 sensor histidine kinase/response regulator compare
Pf1N1B4_3685 -1.2 -3.4 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) compare
Pf1N1B4_1819 -1.2 -2.8 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) compare
Pf1N1B4_5561 -1.2 -2.6 hypothetical protein compare
Pf1N1B4_164 -1.1 -2.2 ADP-ribosylglycohydrolase family protein compare
Pf1N1B4_5699 -1.1 -1.5 ABC-type uncharacterized transport system, ATPase component compare
Pf1N1B4_4897 -1.1 -1.6 Transcriptional regulator, LysR family compare
Pf1N1B4_3451 -1.1 -2.8 Aspartokinase (EC 2.7.2.4) compare
Pf1N1B4_3768 -1.1 -2.2 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_3508 -1.1 -3.2 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_2935 -1.1 -2.1 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf1N1B4_4627 -1.1 -1.7 FIG00957600: hypothetical protein compare
Pf1N1B4_76 -1.1 -2.4 ATP binding protein compare
Pf1N1B4_4040 -1.1 -2.2 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_5330 -1.0 -1.4 hypothetical protein compare
Pf1N1B4_683 -1.0 -2.6 Fumarate hydratase class I, aerobic (EC 4.2.1.2) compare
Pf1N1B4_733 -1.0 -1.3 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Pf1N1B4_1818 -1.0 -4.1 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) compare
Pf1N1B4_4396 -1.0 -2.4 Arginine/ornithine ABC transporter, ATP-binding protein AotP compare
Pf1N1B4_4826 -1.0 -2.0 glutamine synthetase family protein compare
Pf1N1B4_1590 -1.0 -4.0 Histidine utilization repressor compare
Pf1N1B4_1566 -1.0 -4.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_412 -1.0 -1.9 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf1N1B4_5542 -1.0 -1.5 hypothetical protein compare
Pf1N1B4_3729 -1.0 -1.8 Quaternary ammonium compound-resistance protein SugE compare
Pf1N1B4_5659 -1.0 -6.4 NfuA Fe-S protein maturation compare
Pf1N1B4_1180 -1.0 -1.2 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf1N1B4_4761 -1.0 -2.4 hypothetical protein compare
Pf1N1B4_1780 -1.0 -1.9 FIG00961586: hypothetical protein compare
Pf1N1B4_5278 -1.0 -1.4 hypothetical protein compare
Pf1N1B4_5383 -1.0 -5.4 hypothetical protein compare
Pf1N1B4_4957 -1.0 -2.0 Transcriptional regulator, TetR family compare
Pf1N1B4_1366 -1.0 -2.3 FMN-dependent NADH-azoreductase compare
Pf1N1B4_3900 -0.9 -2.6 Universal stress protein family COG0589 compare
Pf1N1B4_1279 -0.9 -1.6 Flp pilus assembly protein TadB compare
Pf1N1B4_3445 -0.9 -2.5 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf1N1B4_1716 -0.9 -1.9 FIG00953394: hypothetical protein compare
Pf1N1B4_5051 -0.9 -2.3 Sensor protein DegS compare
Pf1N1B4_3833 -0.9 -4.5 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_3518 -0.9 -1.6 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_5640 -0.9 -2.7 Transcriptional regulator, IclR family compare
Pf1N1B4_5476 -0.9 -1.6 hypothetical protein compare
Pf1N1B4_3793 -0.9 -2.6 COG2010: Cytochrome c, mono- and diheme variants compare
Pf1N1B4_4212 -0.9 -1.5 Gfa-like protein compare
Pf1N1B4_867 -0.9 -2.7 Serine acetyltransferase (EC 2.3.1.30) compare
Pf1N1B4_644 -0.9 -1.3 Cold shock protein CspC compare
Pf1N1B4_1845 -0.9 -1.7 FIG00954395: hypothetical protein compare
Pf1N1B4_1238 -0.9 -5.6 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) compare
Pf1N1B4_348 -0.9 -2.7 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_4154 -0.9 -2.0 Transcriptional regulator, AraC family compare
Pf1N1B4_3093 -0.9 -1.4 Outer membrane protein H precursor compare
Pf1N1B4_4343 -0.9 -2.0 hypothetical protein compare
Pf1N1B4_2885 -0.9 -3.7 Paraquat-inducible protein A compare
Pf1N1B4_841 -0.9 -3.2 ABC-type sugar transport systems, ATPase components compare
Pf1N1B4_1899 -0.9 -2.6 Gfa-like protein compare
Pf1N1B4_716 -0.9 -2.3 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites compare
Pf1N1B4_5386 -0.9 -1.5 hypothetical protein compare
Pf1N1B4_1837 -0.9 -1.3 Osmotically inducible protein C compare
Pf1N1B4_5661 -0.9 -4.5 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf1N1B4_5187 -0.9 -1.1 5S RNA compare
Pf1N1B4_2176 -0.8 -2.1 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
Pf1N1B4_4870 -0.8 -1.3 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf1N1B4_2209 -0.8 -4.4 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_2150 -0.8 -1.5 Xanthine phosphoribosyltransferase (EC 2.4.2.22) compare
Pf1N1B4_4673 -0.8 -2.3 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf1N1B4_5859 -0.8 -2.6 Glutamate carboxypeptidase (EC 3.4.17.11) compare
Pf1N1B4_1749 -0.8 -0.9 Prevent host death protein, Phd antitoxin compare
Pf1N1B4_3458 -0.8 -1.8 hypothetical protein compare
Pf1N1B4_2940 -0.8 -1.6 hypothetical protein compare
Pf1N1B4_2807 -0.8 -1.7 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf1N1B4_5774 -0.8 -2.5 Nitrite reductase associated c-type cytochorome NirN compare
Pf1N1B4_2857 -0.8 -2.2 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_2949 -0.8 -1.7 FIG00956396: hypothetical protein compare
Pf1N1B4_4763 -0.8 -2.4 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) compare
Pf1N1B4_3590 -0.8 -3.0 hypothetical protein compare
Pf1N1B4_6035 -0.8 -2.2 D-ribose ABC transporter, substrate-binding component RbsB (from data) compare
Pf1N1B4_4494 -0.8 -2.2 hypothetical protein compare
Pf1N1B4_1891 -0.8 -1.5 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Pf1N1B4_3531 -0.8 -1.7 FIG039061: hypothetical protein related to heme utilization compare
Pf1N1B4_3331 -0.8 -1.8 Glycine cleavage system transcriptional antiactivator GcvR compare
Pf1N1B4_5920 -0.8 -2.1 Transcriptional regulator, AraC family compare
Pf1N1B4_2856 -0.8 -2.5 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_150 -0.8 -1.8 SyrP-like protein compare
Pf1N1B4_967 -0.8 -1.4 hypothetical protein compare
Pf1N1B4_3153 -0.7 -1.4 hypothetical protein compare
Pf1N1B4_5269 -0.7 -1.4 hypothetical protein compare
Pf1N1B4_1625 -0.7 -1.7 FIG00956267: hypothetical protein compare
Pf1N1B4_4640 -0.7 -1.9 MoxR-like ATPase in aerotolerance operon compare
Pf1N1B4_490 -0.7 -1.9 hypothetical protein compare
Pf1N1B4_3260 -0.7 -1.9 Cardiolipin synthetase (EC 2.7.8.-) compare
Pf1N1B4_2225 -0.7 -5.0 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf1N1B4_6041 -0.7 -1.3 Carbon storage regulator compare
Pf1N1B4_3074 -0.7 -1.3 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf1N1B4_691 -0.7 -1.6 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf1N1B4_2367 -0.7 -3.6 Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39) compare
Pf1N1B4_1724 -0.7 -1.6 Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25) compare
Pf1N1B4_3435 -0.7 -1.4 ABC transporter for L-Arginine and L-Citrulline, ATPase component (from data) compare
Pf1N1B4_3819 -0.7 -2.6 Methylisocitrate lyase (EC 4.1.3.30) compare
Pf1N1B4_3524 -0.7 -2.0 FIG00955363: hypothetical protein compare
Pf1N1B4_2860 -0.7 -3.4 FIG00954153: hypothetical protein compare
Pf1N1B4_4874 -0.7 -1.9 hypothetical protein compare
Pf1N1B4_1042 -0.7 -1.4 Dihydroneopterin triphosphate epimerase compare
Pf1N1B4_4553 -0.7 -1.8 FIG00959354: hypothetical protein compare
Pf1N1B4_4929 -0.7 -1.8 Opine oxidase subunit B compare
Pf1N1B4_5151 -0.7 -1.7 FIG002283: Isochorismatase family protein compare
Pf1N1B4_3386 -0.7 -2.1 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf1N1B4_4419 -0.7 -1.5 Organosulfonate utilization protein SsuF compare
Pf1N1B4_3711 -0.7 -2.9 Cobyric acid synthase (EC 6.3.5.10) compare
Pf1N1B4_2206 -0.7 -3.4 FIG139438: lipoprotein B compare
Pf1N1B4_3684 -0.7 -2.7 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) compare
Pf1N1B4_4355 -0.7 -1.6 Gamma-glutamyl-aminobutyraldehyde dehydrogenase (EC 1.2.1.-) compare
Pf1N1B4_4208 -0.7 -1.6 organophosphate pesticide hydrolase compare
Pf1N1B4_4041 -0.7 -1.9 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_2706 -0.7 -1.6 FIG00954871: hypothetical protein compare
Pf1N1B4_3861 -0.7 -2.4 FIG00953368: hypothetical protein compare
Pf1N1B4_4926 -0.7 -2.6 ATPase components of various ABC-type transport systems, contain duplicated ATPase compare
Pf1N1B4_1893 -0.7 -2.3 ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A compare
Pf1N1B4_4762 -0.7 -2.1 hypothetical protein compare
Pf1N1B4_3290 -0.7 -1.3 Alternative cytochrome c oxidase polypeptide CoxP (EC 1.9.3.1) compare
Pf1N1B4_3528 -0.7 -2.8 Putative membrane protein compare
Pf1N1B4_5995 -0.7 -1.4 Transporter, MFS superfamily compare
Pf1N1B4_749 -0.7 -1.3 hypothetical protein compare
Pf1N1B4_5949 -0.7 -1.2 Phosphomannomutase (EC 5.4.2.8) compare
Pf1N1B4_4029 -0.7 -1.7 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_1462 -0.7 -4.7 Oligosaccharide repeat unit polymerase Wzy; O-antigen ligase compare
Pf1N1B4_1975 -0.6 -1.6 Transcriptional regulator, AsnC family compare
Pf1N1B4_4103 -0.6 -1.1 Flagellar synthesis regulator FleN compare
Pf1N1B4_3176 -0.6 -1.9 Succinylglutamate desuccinylase/aspartoacylase compare
Pf1N1B4_1094 -0.6 -1.5 FIG005080: Possible exported protein compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source a-Ketoglutaric acid disodium salt hydrate in Pseudomonas fluorescens FW300-N1B4

For carbon source a-Ketoglutaric acid disodium salt hydrate across organisms