Experiment set1IT026 for Pseudomonas fluorescens FW300-N1B4

Compare to:

D-Ribose carbon source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_6031 -4.2 -5.7 Ribokinase (EC 2.7.1.15) (from data) conserved
Pf1N1B4_6 -3.6 -4.9 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_2880 -3.5 -12.0 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_1627 -3.4 -4.6 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_1408 -3.2 -4.8 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_742 -3.2 -8.2 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_2548 -3.2 -7.0 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_1831 -3.1 -11.5 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_2303 -3.1 -14.2 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_2549 -3.1 -9.7 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_1067 -3.1 -5.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_12 -3.0 -7.7 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_1533 -3.0 -8.2 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_1565 -3.0 -4.6 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_1534 -3.0 -19.3 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_2545 -3.0 -13.9 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_15 -3.0 -4.5 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_1624 -2.9 -8.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_58 -2.9 -6.5 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_2850 -2.9 -6.8 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_2338 -2.8 -8.9 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1626 -2.8 -7.3 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_2526 -2.7 -15.8 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_2858 -2.7 -11.2 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_6035 -2.6 -4.5 D-ribose ABC transporter, substrate-binding component RbsB (from data) compare
Pf1N1B4_1830 -2.6 -9.0 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_3518 -2.6 -3.8 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_6034 -2.6 -6.6 D-ribose ABC transporter, ATPase component RbsA (from data) conserved
Pf1N1B4_2272 -2.5 -4.8 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_762 -2.4 -6.3 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_350 -2.4 -7.1 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_2384 -2.4 -9.8 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_1617 -2.4 -7.9 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_3697 -2.4 -8.6 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_1434 -2.4 -7.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2879 -2.3 -7.4 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_1315 -2.2 -8.1 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_2878 -2.2 -8.2 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_2010 -2.1 -5.9 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_5666 -2.0 -3.2 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_847 -1.9 -7.1 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_3038 -1.9 -3.5 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf1N1B4_4065 -1.9 -7.1 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_3849 -1.8 -4.5 Transcriptional regulator, GntR family compare
Pf1N1B4_617 -1.8 -2.4 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_327 -1.8 -2.6 hypothetical protein compare
Pf1N1B4_2011 -1.8 -8.2 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_5665 -1.7 -5.0 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_257 -1.5 -5.3 sensor histidine kinase/response regulator compare
Pf1N1B4_2337 -1.5 -4.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_5187 -1.5 -2.0 5S RNA compare
Pf1N1B4_3325 -1.5 -2.0 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_3485 -1.4 -2.1 hypothetical protein compare
Pf1N1B4_2859 -1.4 -10.2 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_3812 -1.4 -6.1 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_1307 -1.4 -2.2 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_3081 -1.4 -11.7 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_3656 -1.4 -2.5 Eukaryotic-type low-affinity urea transporter compare
Pf1N1B4_2009 -1.4 -4.3 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_5509 -1.3 -2.4 hypothetical protein compare
Pf1N1B4_1147 -1.3 -5.5 Fructose repressor FruR, LacI family compare
Pf1N1B4_3234 -1.3 -3.1 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf1N1B4_3368 -1.3 -1.9 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf1N1B4_751 -1.3 -1.9 hypothetical protein compare
Pf1N1B4_4038 -1.3 -2.0 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_1317 -1.3 -2.4 Sensor histidine kinase/response regulator compare
Pf1N1B4_3905 -1.3 -3.4 FIG00953423: hypothetical protein compare
Pf1N1B4_4740 -1.3 -1.7 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_275 -1.3 -2.0 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_1906 -1.2 -3.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_3328 -1.2 -2.1 Rhodanese-like domain protein compare
Pf1N1B4_4030 -1.1 -2.8 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_1328 -1.1 -2.1 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_4678 -1.1 -3.3 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf1N1B4_4446 -1.1 -1.8 DNA topoisomerase III (EC 5.99.1.2) compare
Pf1N1B4_952 -1.1 -3.2 Cell division protein MraZ compare
Pf1N1B4_1625 -1.1 -3.9 FIG00956267: hypothetical protein compare
Pf1N1B4_1336 -1.1 -1.1 Putative multicopper oxidases compare
Pf1N1B4_5420 -1.1 -1.9 hypothetical protein compare
Pf1N1B4_4335 -1.1 -1.9 Putative translation initiation inhibitor, yjgF family compare
Pf1N1B4_961 -1.1 -8.1 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf1N1B4_35 -1.0 -2.2 hypothetical protein compare
Pf1N1B4_2949 -1.0 -1.8 FIG00956396: hypothetical protein compare
Pf1N1B4_4028 -1.0 -2.7 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_1234 -1.0 -2.9 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_1569 -1.0 -6.8 Twin-arginine translocation protein TatC compare
Pf1N1B4_5342 -1.0 -1.7 hypothetical protein compare
Pf1N1B4_4187 -1.0 -2.8 Probable signal peptide protein compare
Pf1N1B4_4473 -1.0 -1.7 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_1332 -1.0 -2.2 Cobalt-precorrin-6 synthase, anaerobic compare
Pf1N1B4_3927 -1.0 -1.4 hypothetical protein compare
Pf1N1B4_4972 -1.0 -1.9 CELL PROCESSES; Adaptation; adaptations, atypical conditions compare
Pf1N1B4_5370 -1.0 -1.7 hypothetical protein compare
Pf1N1B4_1703 -0.9 -2.2 Methionine ABC transporter permease protein compare
Pf1N1B4_2014 -0.9 -2.9 Homocysteine S-methyltransferase (EC 2.1.1.10) compare
Pf1N1B4_5923 -0.9 -2.1 PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein compare
Pf1N1B4_590 -0.9 -5.7 Phosphogluconate repressor HexR, RpiR family compare
Pf1N1B4_3499 -0.9 -1.5 hypothetical protein compare
Pf1N1B4_3506 -0.9 -3.6 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_2527 -0.9 -5.1 ApaG protein compare
Pf1N1B4_348 -0.9 -2.8 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_962 -0.9 -5.5 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf1N1B4_4494 -0.9 -2.6 hypothetical protein compare
Pf1N1B4_4019 -0.9 -2.1 Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family compare
Pf1N1B4_1568 -0.9 -2.2 Twin-arginine translocation protein TatB compare
Pf1N1B4_164 -0.9 -1.8 ADP-ribosylglycohydrolase family protein compare
Pf1N1B4_1191 -0.9 -1.6 hypothetical protein compare
Pf1N1B4_996 -0.9 -2.3 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf1N1B4_1579 -0.9 -2.4 Imidazolonepropionase (EC 3.5.2.7) (from data) compare
Pf1N1B4_4835 -0.9 -1.5 Carbon starvation protein A compare
Pf1N1B4_219 -0.9 -2.7 Acyclic terpenes utilization regulator AtuR, TetR family compare
Pf1N1B4_1683 -0.9 -1.3 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_2102 -0.9 -1.5 hypothetical protein compare
Pf1N1B4_2154 -0.9 -1.9 hypothetical protein compare
Pf1N1B4_3742 -0.9 -1.7 Oxidoreductase, zinc-binding compare
Pf1N1B4_4833 -0.8 -2.4 DNA-binding response regulator, LuxR family compare
Pf1N1B4_2433 -0.8 -2.3 FIG00953108: hypothetical protein compare
Pf1N1B4_960 -0.8 -5.2 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf1N1B4_1612 -0.8 -1.8 FIG00955429: hypothetical protein compare
Pf1N1B4_1878 -0.8 -5.0 Cytochrome c4 compare
Pf1N1B4_5685 -0.8 -2.1 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf1N1B4_1584 -0.8 -1.6 Histidine ABC transporter, permease protein (TC 3.A.1) compare
Pf1N1B4_4039 -0.8 -3.5 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_1004 -0.8 -3.0 Glyoxylate reductase (EC 1.1.1.79) / Glyoxylate reductase (EC 1.1.1.26) / Hydroxypyruvate reductase (EC 1.1.1.81); 2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-) compare
Pf1N1B4_1113 -0.8 -3.1 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_2147 -0.8 -2.6 Putrescine utilization regulator compare
Pf1N1B4_4331 -0.8 -1.6 Transporter, LysE family compare
Pf1N1B4_652 -0.8 -4.5 Sensory box histidine kinase compare
Pf1N1B4_6041 -0.8 -1.5 Carbon storage regulator compare
Pf1N1B4_2935 -0.8 -1.2 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf1N1B4_4605 -0.8 -2.8 FIG00953564: hypothetical protein compare
Pf1N1B4_673 -0.8 -2.0 MoxR-like ATPases compare
Pf1N1B4_1936 -0.8 -3.2 Chromosome (plasmid) partitioning protein ParA compare
Pf1N1B4_3799 -0.8 -1.8 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) compare
Pf1N1B4_2465 -0.8 -1.6 Two-component response regulator CreB compare
Pf1N1B4_3078 -0.8 -1.5 FIG138056: a glutathione-dependent thiol reductase compare
Pf1N1B4_5137 -0.7 -3.7 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf1N1B4_1311 -0.7 -2.5 Probable transmembrane protein compare
Pf1N1B4_1389 -0.7 -1.7 Lysine decarboxylase family compare
Pf1N1B4_4336 -0.7 -1.8 FMN-dependent NADH-azoreductase compare
Pf1N1B4_5689 -0.7 -2.4 Lactoylglutathione lyase compare
Pf1N1B4_6030 -0.7 -2.2 Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) compare
Pf1N1B4_3111 -0.7 -1.3 tRNA pseudouridine 13 synthase (EC 4.2.1.-) compare
Pf1N1B4_5904 -0.7 -1.5 FIG00955320: hypothetical protein compare
Pf1N1B4_675 -0.7 -1.8 hypothetical protein compare
Pf1N1B4_4517 -0.7 -1.7 Dihydropyrimidinase (EC 3.5.2.2) compare
Pf1N1B4_4715 -0.7 -1.1 Transcriptional regulator compare
Pf1N1B4_5051 -0.7 -1.7 Sensor protein DegS compare
Pf1N1B4_678 -0.7 -3.5 Pyruvate kinase (EC 2.7.1.40) compare
Pf1N1B4_3766 -0.7 -3.6 Uricase (urate oxidase) (EC 1.7.3.3) compare
Pf1N1B4_1266 -0.7 -1.9 hypothetical protein compare
Pf1N1B4_1827 -0.7 -2.3 FIG00953482: hypothetical protein compare
Pf1N1B4_4040 -0.7 -1.5 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_3362 -0.7 -2.2 Multidrug resistance protein B compare
Pf1N1B4_3843 -0.7 -2.4 Ribosome modulation factor compare
Pf1N1B4_3508 -0.7 -2.3 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_5674 -0.7 -1.3 Strictosidine synthase precursor (EC 4.3.3.2) compare
Pf1N1B4_4613 -0.7 -1.2 FIG00953934: hypothetical protein compare
Pf1N1B4_4301 -0.7 -2.0 hypothetical protein compare
Pf1N1B4_440 -0.7 -2.3 hypothetical protein compare
Pf1N1B4_4041 -0.7 -2.0 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_2958 -0.7 -1.7 Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) compare
Pf1N1B4_5004 -0.7 -2.5 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf1N1B4_5371 -0.7 -1.4 hypothetical protein compare
Pf1N1B4_4853 -0.7 -1.9 Glycosyltransferase compare
Pf1N1B4_216 -0.7 -2.2 Sigma factor PvdS, controling pyoverdin biosynthesis compare
Pf1N1B4_1370 -0.7 -1.1 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf1N1B4_5916 -0.7 -1.6 Similar to non-heme chloroperoxidase, sll5080 homolog compare
Pf1N1B4_3900 -0.7 -2.0 Universal stress protein family COG0589 compare
Pf1N1B4_2322 -0.7 -1.5 FIG015547: peptidase, M16 family compare
Pf1N1B4_3768 -0.7 -1.4 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_5430 -0.7 -1.6 hypothetical protein compare
Pf1N1B4_3647 -0.7 -4.4 Cytochrome c heme lyase subunit CcmH compare
Pf1N1B4_5151 -0.7 -1.6 FIG002283: Isochorismatase family protein compare
Pf1N1B4_1708 -0.7 -2.1 Efflux transporter, RND family, MFP subunit compare
Pf1N1B4_1 -0.7 -1.4 Colicin V production protein compare
Pf1N1B4_5600 -0.7 -2.2 Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) compare
Pf1N1B4_6004 -0.7 -2.3 tgtA5 cluster protein 1 compare
Pf1N1B4_3928 -0.7 -1.9 FIG00955661: hypothetical protein compare
Pf1N1B4_5838 -0.6 -1.0 FIG00956589: hypothetical protein compare
Pf1N1B4_2252 -0.6 -1.7 Organosulfonate utilization protein SsuF compare
Pf1N1B4_6032 -0.6 -1.0 Ribose operon repressor compare
Pf1N1B4_4731 -0.6 -1.3 Sigma-54 dependent transcriptional regulator compare
Pf1N1B4_1346 -0.6 -1.4 Urea ABC transporter, ATPase protein UrtD compare
Pf1N1B4_1374 -0.6 -1.6 HupE-UreJ family metal transporter compare
Pf1N1B4_5407 -0.6 -1.5 hypothetical protein compare
Pf1N1B4_4953 -0.6 -1.7 Selenocysteine-specific translation elongation factor compare
Pf1N1B4_4640 -0.6 -2.6 MoxR-like ATPase in aerotolerance operon compare
Pf1N1B4_1785 -0.6 -2.0 Uricase (urate oxidase) (EC 1.7.3.3) compare
Pf1N1B4_2366 -0.6 -1.7 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf1N1B4_2706 -0.6 -1.5 FIG00954871: hypothetical protein compare
Pf1N1B4_5511 -0.6 -2.1 hypothetical protein compare
Pf1N1B4_2845 -0.6 -2.1 FIG00953066: hypothetical protein compare
Pf1N1B4_1159 -0.6 -1.6 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf1N1B4_4847 -0.6 -1.6 Various polyols ABC transporter, ATP-binding component compare
Pf1N1B4_4029 -0.6 -1.6 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_4632 -0.6 -1.7 Exonuclease SbcC compare
Pf1N1B4_1566 -0.6 -2.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_5853 -0.6 -1.8 Glutamine synthetase (EC 6.3.1.2), putative compare
Pf1N1B4_5556 -0.6 -1.8 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source D-Ribose in Pseudomonas fluorescens FW300-N1B4

For carbon source D-Ribose across organisms