Experiment set1IT026 for Burkholderia phytofirmans PsJN

Compare to:

D-Alanine carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS09500 -7.8 -5.4 glucose-6-phosphate isomerase compare
BPHYT_RS16270 -6.9 -6.0 phosphoglycerate kinase compare
BPHYT_RS06190 -6.5 -6.1 heptosyltransferase compare
BPHYT_RS17890 -6.2 -3.8 shikimate kinase compare
BPHYT_RS14845 -6.1 -4.2 cysteine synthase compare
BPHYT_RS02610 -6.0 -6.1 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS08850 -5.5 -3.8 transcriptional regulator compare
BPHYT_RS06175 -5.4 -8.3 LPS biosynthesis compare
BPHYT_RS08955 -5.4 -7.3 homoserine dehydrogenase compare
BPHYT_RS16835 -5.3 -8.7 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS06900 -5.3 -10.6 aspartate aminotransferase compare
BPHYT_RS06610 -5.2 -2.7 triosephosphate isomerase compare
BPHYT_RS17670 -5.2 -6.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS14915 -5.2 -9.8 phosphoserine aminotransferase compare
BPHYT_RS08960 -5.1 -3.2 threonine synthase compare
BPHYT_RS17685 -5.1 -9.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS17855 -5.0 -19.5 glutamate synthase compare
BPHYT_RS17885 -5.0 -9.0 3-dehydroquinate synthase compare
BPHYT_RS33875 -5.0 -11.7 tryptophan synthase subunit alpha compare
BPHYT_RS02860 -5.0 -1.8 membrane protein compare
BPHYT_RS12985 -4.9 -4.4 amino acid acetyltransferase compare
BPHYT_RS33880 -4.8 -14.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS14895 -4.8 -5.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS06545 -4.8 -11.8 acetolactate synthase compare
BPHYT_RS09515 -4.8 -7.2 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS33835 -4.7 -12.7 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS12055 -4.7 -18.6 phosphoenolpyruvate synthase compare
BPHYT_RS15915 -4.6 -16.4 ornithine carbamoyltransferase compare
BPHYT_RS14190 -4.6 -11.2 carbamoyl phosphate synthase large subunit compare
BPHYT_RS03150 -4.6 -11.6 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS13705 -4.5 -4.9 chorismate synthase compare
BPHYT_RS33865 -4.5 -12.4 tryptophan synthase alpha chain compare
BPHYT_RS17690 -4.4 -10.7 imidazole glycerol phosphate synthase compare
BPHYT_RS04385 -4.4 -5.9 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS06555 -4.4 -13.5 ketol-acid reductoisomerase compare
BPHYT_RS02590 -4.4 -9.0 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS17390 -4.3 -17.8 anthranilate synthase subunit I compare
BPHYT_RS15920 -4.3 -11.9 argininosuccinate synthase compare
BPHYT_RS16245 -4.3 -7.2 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS17400 -4.3 -5.6 anthranilate phosphoribosyltransferase compare
BPHYT_RS04340 -4.3 -6.5 hypothetical protein compare
BPHYT_RS33900 -4.3 -11.9 3-isopropylmalate dehydrogenase compare
BPHYT_RS16905 -4.3 -6.1 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS12840 -4.3 -6.1 pyruvate dehydrogenase compare
BPHYT_RS33915 -4.2 -10.0 isopropylmalate isomerase compare
BPHYT_RS16255 -4.2 -6.3 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS18320 -4.2 -13.1 orotate phosphoribosyltransferase compare
BPHYT_RS33645 -4.1 -7.1 homoserine kinase compare
BPHYT_RS03640 -4.1 -5.6 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS06405 -3.9 -6.2 phosphoribosylamine--glycine ligase compare
BPHYT_RS01595 -3.9 -11.2 homoserine O-acetyltransferase compare
BPHYT_RS17680 -3.9 -5.1 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS05225 -3.9 -11.1 phosphoenolpyruvate carboxylase compare
BPHYT_RS08245 -3.9 -8.0 anti-sigma factor compare
BPHYT_RS12845 -3.9 -17.8 ATPase compare
BPHYT_RS08565 -3.9 -1.8 dihydroorotate dehydrogenase compare
BPHYT_RS12530 -3.9 -6.9 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS17380 -3.9 -11.1 ribulose-phosphate 3-epimerase compare
BPHYT_RS14855 -3.8 -3.6 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS04370 -3.8 -3.1 glycosyl transferase compare
BPHYT_RS17405 -3.8 -1.9 indole-3-glycerol phosphate synthase compare
BPHYT_RS17395 -3.8 -3.6 anthranilate synthase subunit II compare
BPHYT_RS16840 -3.8 -4.4 transketolase compare
BPHYT_RS33840 -3.7 -9.6 amidophosphoribosyltransferase compare
BPHYT_RS04285 -3.7 -2.3 rhamnosyltransferase compare
BPHYT_RS17715 -3.7 -9.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS04290 -3.6 -3.4 glycosyl transferase family 2 compare
BPHYT_RS02570 -3.6 -4.0 phosphocarrier protein HPr compare
BPHYT_RS17700 -3.6 -6.1 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS17675 -3.5 -3.8 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS14790 -3.5 -7.0 D-amino acid dehydrogenase conserved
BPHYT_RS33920 -3.4 -9.3 type II citrate synthase compare
BPHYT_RS04955 -3.4 -3.6 methionyl-tRNA synthetase compare
BPHYT_RS03535 -3.4 -8.7 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS14785 -3.3 -9.6 AsnC family transcriptional regulator conserved
BPHYT_RS14910 -3.3 -13.0 chorismate mutase compare
BPHYT_RS04365 -3.3 -11.3 membrane protein compare
BPHYT_RS14865 -3.1 -4.2 UDP-glucose 6-dehydrogenase compare
BPHYT_RS18665 -3.0 -9.7 GumN family protein compare
BPHYT_RS04725 -3.0 -9.5 sulfite reductase compare
BPHYT_RS04730 -2.9 -4.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS04720 -2.8 -6.3 transcriptional regulator compare
BPHYT_RS04350 -2.7 -12.5 membrane protein compare
BPHYT_RS35885 -2.6 -6.9 hypothetical protein compare
BPHYT_RS17640 -2.6 -4.9 2-alkenal reductase compare
BPHYT_RS16675 -2.6 -3.8 dihydroorotase compare
BPHYT_RS02865 -2.6 -3.5 hypothetical protein compare
BPHYT_RS02415 -2.5 -6.9 cytochrome C550 compare
BPHYT_RS10100 -2.5 -6.1 dihydroxy-acid dehydratase compare
BPHYT_RS33185 -2.4 -6.8 methyltransferase type 11 compare
BPHYT_RS03725 -2.3 -2.5 serine hydroxymethyltransferase compare
BPHYT_RS06195 -2.2 -3.4 membrane protein compare
BPHYT_RS23840 -2.2 -4.4 methyltransferase compare
BPHYT_RS06530 -2.1 -2.4 membrane protein compare
BPHYT_RS04965 -2.1 -6.6 ATP-binding protein compare
BPHYT_RS01455 -2.0 -1.4 peptide deformylase compare
BPHYT_RS06685 -2.0 -2.8 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS13220 -2.0 -8.9 phosphomethylpyrimidine synthase compare
BPHYT_RS18705 -2.0 -1.9 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS18670 -1.9 -4.5 peptide ABC transporter ATP-binding protein compare
BPHYT_RS14195 -1.8 -2.3 carbamoyl phosphate synthase small subunit compare
BPHYT_RS32260 -1.7 -2.2 hypothetical protein compare
BPHYT_RS04745 -1.7 -6.2 sulfate adenylyltransferase compare
BPHYT_RS18340 -1.7 -2.0 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS16340 -1.7 -6.4 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS12970 -1.6 -8.3 hypothetical protein compare
BPHYT_RS01485 -1.6 -1.5 histidine kinase compare
BPHYT_RS03570 -1.6 -5.8 heat-inducible transcription repressor HrcA compare
BPHYT_RS05960 -1.6 -4.8 endoribonuclease L-PSP compare
BPHYT_RS19985 -1.5 -1.4 CoA-transferase compare
BPHYT_RS15075 -1.5 -1.8 dihydrokaempferol 4-reductase compare
BPHYT_RS28705 -1.5 -1.9 IclR family transcriptional regulator compare
BPHYT_RS01660 -1.5 -3.6 hypothetical protein compare
BPHYT_RS12965 -1.5 -6.8 fatty acid hydroxylase compare
BPHYT_RS17945 -1.5 -2.2 cytochrome C biogenesis protein compare
BPHYT_RS06535 -1.5 -2.8 membrane protein compare
BPHYT_RS16345 -1.4 -4.5 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS17265 -1.4 -1.8 cell division protein compare
BPHYT_RS33220 -1.4 -7.0 group 1 glycosyl transferase compare
BPHYT_RS14900 -1.4 -2.8 prephenate dehydrogenase compare
BPHYT_RS03645 -1.4 -2.3 tRNA dimethylallyltransferase compare
BPHYT_RS33215 -1.3 -4.3 glycosyltransferase compare
BPHYT_RS19565 -1.3 -5.9 gamma-glutamyl:cysteine ligase compare
BPHYT_RS20790 -1.3 -2.3 TetR family transcriptional regulator compare
BPHYT_RS11285 -1.3 -3.5 LacI family transcription regulator compare
BPHYT_RS08950 -1.3 -4.8 aminotransferase compare
BPHYT_RS09145 -1.3 -6.7 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS04595 -1.3 -2.8 cytoplasmic protein compare
BPHYT_RS33905 -1.3 -1.0 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS22245 -1.3 -8.5 transporter for D-alanine, D-lactate, and pyruvate (MctP) (from data) conserved
BPHYT_RS09850 -1.3 -2.2 molybdopterin oxidoreductase compare
BPHYT_RS15595 -1.3 -6.6 ABC transporter compare
BPHYT_RS15600 -1.3 -6.6 ABC transporter ATP-binding protein compare
BPHYT_RS01590 -1.3 -5.4 methionine biosynthesis protein MetW compare
BPHYT_RS25070 -1.3 -1.7 choline ABC transporter permease compare
BPHYT_RS04740 -1.2 -4.6 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS30450 -1.2 -1.3 ABC transporter permease compare
BPHYT_RS02905 -1.2 -8.8 RNA polymerase subunit sigma-54 compare
BPHYT_RS30365 -1.2 -1.2 beta-lactamase compare
BPHYT_RS36275 -1.2 -2.2 hypothetical protein compare
BPHYT_RS16975 -1.2 -4.3 shikimate 5-dehydrogenase compare
BPHYT_RS19570 -1.2 -8.1 sodium/hydrogen exchanger compare
BPHYT_RS09105 -1.2 -5.9 protein-L-isoaspartate O-methyltransferase compare
BPHYT_RS26940 -1.2 -3.2 nuclease compare
BPHYT_RS08125 -1.2 -7.4 ATPase compare
BPHYT_RS16085 -1.2 -4.4 DeoR faimly transcriptional regulator compare
BPHYT_RS26080 -1.2 -1.7 ABC transporter ATPase compare
BPHYT_RS22240 -1.1 -7.5 hypothetical protein conserved
BPHYT_RS33965 -1.1 -1.6 methylcitrate synthase compare
BPHYT_RS22730 -1.1 -1.8 serine/threonine kinase compare
BPHYT_RS29185 -1.1 -2.1 sugar ABC transporter permease compare
BPHYT_RS02285 -1.1 -5.1 cell division protein compare
BPHYT_RS33580 -1.1 -3.7 geranyltranstransferase compare
BPHYT_RS12465 -1.1 -2.6 inositol monophosphatase compare
BPHYT_RS30645 -1.1 -2.3 hypothetical protein compare
BPHYT_RS15590 -1.1 -4.0 amino acid ABC transporter ATPase compare
BPHYT_RS06375 -1.1 -4.7 ribonuclease compare
BPHYT_RS34655 -1.1 -1.7 2-amino-3-ketobutyrate CoA ligase compare
BPHYT_RS15605 -1.1 -6.5 ABC transporter permease compare
BPHYT_RS14660 -1.1 -1.2 hypothetical protein compare
BPHYT_RS22910 -1.1 -1.4 hypothetical protein compare
BPHYT_RS31950 -1.0 -2.2 short-chain dehydrogenase compare
BPHYT_RS27920 -1.0 -1.5 tricarballylate utilization protein B compare
BPHYT_RS14400 -1.0 -3.3 anti-sigma factor compare
BPHYT_RS15620 -1.0 -2.5 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS31910 -1.0 -1.5 hypothetical protein compare
BPHYT_RS29085 -1.0 -1.5 LysR family transcriptional regulator compare
BPHYT_RS31525 -1.0 -2.1 hypothetical protein compare
BPHYT_RS21860 -1.0 -1.4 hypothetical protein compare
BPHYT_RS18620 -1.0 -3.2 transcriptional regulator compare
BPHYT_RS17975 -1.0 -2.8 cytochrome C biogenesis protein compare
BPHYT_RS02955 -1.0 -3.9 formyltetrahydrofolate deformylase compare
BPHYT_RS03625 -1.0 -4.0 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS33535 -1.0 -8.0 RNA polymerase sigma factor RpoD compare
BPHYT_RS11705 -1.0 -1.3 hypothetical protein compare
BPHYT_RS14500 -1.0 -2.4 molybdenum cofactor biosynthesis protein MoaA compare
BPHYT_RS07325 -1.0 -1.0 GntR family transcriptional regulator compare
BPHYT_RS12150 -1.0 -6.7 PII uridylyl-transferase compare
BPHYT_RS24925 -1.0 -1.4 cytochrome O ubiquinol oxidase compare
BPHYT_RS12940 -0.9 -3.2 signal transduction histidine kinase compare
BPHYT_RS31770 -0.9 -3.0 TetR family transcriptional regulator compare
BPHYT_RS35230 -0.9 -1.0 type 11 methyltransferase compare
BPHYT_RS21675 -0.9 -2.4 FAD-dependent oxidoreductase compare
BPHYT_RS24585 -0.9 -1.5 NUDIX hydrolase compare
BPHYT_RS05880 -0.9 -2.1 hypothetical protein compare
BPHYT_RS02690 -0.9 -5.4 protoheme IX farnesyltransferase compare
BPHYT_RS19115 -0.9 -2.9 acyl carrier protein compare
BPHYT_RS02685 -0.9 -5.3 cytochrome C oxidase subunit I compare
BPHYT_RS20630 -0.9 -1.2 patatin compare
BPHYT_RS06410 -0.9 -1.4 transcriptional regulator compare
BPHYT_RS29620 -0.9 -0.8 hypothetical protein compare
BPHYT_RS02650 -0.9 -1.2 membrane protein compare
BPHYT_RS05255 -0.9 -1.9 phage abortive infection protein compare
BPHYT_RS23570 -0.9 -4.7 chemotaxis protein CheY compare
BPHYT_RS32250 -0.9 -2.1 membrane protein compare
BPHYT_RS33540 -0.9 -2.4 hypothetical protein compare
BPHYT_RS07540 -0.9 -1.0 hypothetical protein compare
BPHYT_RS35385 -0.9 -2.5 GntR family transcriptional regulator compare
BPHYT_RS16080 -0.9 -3.1 xylulokinase compare
BPHYT_RS08825 -0.9 -0.8 tartronate semialdehyde reductase compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source D-Alanine in Burkholderia phytofirmans PsJN

For carbon source D-Alanine across organisms