Experiment set1IT026 for Burkholderia phytofirmans PsJN

Compare to:

D-Alanine carbon source

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS05905 +1.2 1.6 hypothetical protein compare
BPHYT_RS19355 +1.1 9.4 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase compare
BPHYT_RS27560 +1.1 1.6 histidine kinase compare
BPHYT_RS08615 +1.0 1.8 hypothetical protein compare
BPHYT_RS36440 +1.0 2.4 hypothetical protein compare
BPHYT_RS02765 +1.0 3.0 cytochrome BD oxidase subunit I compare
BPHYT_RS18825 +1.0 4.5 flagellar biosynthesis protein FliP compare
BPHYT_RS18945 +0.9 4.1 flagellar biosynthesis protein FlhB compare
BPHYT_RS18775 +0.9 6.7 flagellar M-ring protein FliF compare
BPHYT_RS02770 +0.9 5.3 membrane protein compare
BPHYT_RS11170 +0.9 1.9 hypothetical protein compare
BPHYT_RS01795 +0.9 5.7 histidine kinase compare
BPHYT_RS10240 +0.9 1.3 translation initiation inhibitor compare
BPHYT_RS28930 +0.8 1.3 chromosome partitioning protein ParA compare
BPHYT_RS02710 +0.8 1.3 hypothetical protein compare
BPHYT_RS18890 +0.8 6.5 flagellar basal body rod protein FlgC compare
BPHYT_RS18810 +0.8 5.2 flagellar motor switch protein FliM compare
BPHYT_RS10850 +0.8 1.9 LysR family transcriptional regulator compare
BPHYT_RS01625 +0.8 3.5 chemotaxis protein CheY compare
BPHYT_RS08150 +0.8 1.1 membrane protein compare
BPHYT_RS10540 +0.8 0.8 secretion protein compare
BPHYT_RS18830 +0.8 4.9 flagellar biosynthesis protein FliQ compare
BPHYT_RS27655 +0.8 1.4 potassium transporter compare
BPHYT_RS18790 +0.8 4.7 ATP synthase compare
BPHYT_RS22250 +0.8 2.8 D-amino acid dehydrogenase compare
BPHYT_RS18940 +0.8 5.3 flagellar biosynthesis protein FlhA compare
BPHYT_RS10040 +0.8 1.1 hypothetical protein compare
BPHYT_RS18895 +0.8 3.1 flagellar basal body rod protein FlgB compare
BPHYT_RS02760 +0.8 2.1 cytochrome BD oxidase subunit II compare
BPHYT_RS01620 +0.7 6.2 sensor histidine kinase compare
BPHYT_RS07190 +0.7 3.3 acetyltransferase compare
BPHYT_RS07480 +0.7 1.4 FAD-dependent oxidoreductase compare
BPHYT_RS31020 +0.7 1.8 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
BPHYT_RS28880 +0.7 2.0 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
BPHYT_RS32675 +0.7 2.4 2-methylcitrate dehydratase compare
BPHYT_RS31970 +0.7 3.5 cupin compare
BPHYT_RS35560 +0.7 2.2 endoribonuclease L-PSP compare
BPHYT_RS12265 +0.7 1.6 alanine acetyltransferase compare
BPHYT_RS20185 +0.7 1.5 sugar transferase compare
BPHYT_RS30825 +0.7 1.2 extradiol dioxygenase compare
BPHYT_RS31345 +0.7 2.0 malonate transporter compare
BPHYT_RS00955 +0.7 1.6 DNA polymerase compare
BPHYT_RS01790 +0.7 5.6 LuxR family transcriptional regulator compare
BPHYT_RS14095 +0.7 2.0 phosphohistidine phosphatase compare
BPHYT_RS07380 +0.7 2.2 membrane protein compare
BPHYT_RS01170 +0.7 1.9 hypothetical protein compare
BPHYT_RS17860 +0.7 3.3 transposase compare
BPHYT_RS23370 +0.7 1.6 glycosyl transferase family 1 compare
BPHYT_RS04505 +0.7 1.9 urease accessory protein UreE compare
BPHYT_RS20440 +0.7 1.4 IclR family transcriptional regulator compare
BPHYT_RS19260 +0.7 1.0 hypothetical protein compare
BPHYT_RS01985 +0.6 1.6 hypothetical protein compare
BPHYT_RS18785 +0.6 1.5 flagellar assembly protein FliH compare
BPHYT_RS18880 +0.6 5.1 flagellar hook protein FlgE compare
BPHYT_RS31305 +0.6 2.1 alcohol dehydrogenase compare
BPHYT_RS11970 +0.6 1.1 cupin compare
BPHYT_RS08595 +0.6 1.7 multidrug transporter compare
BPHYT_RS10135 +0.6 1.1 hypothetical protein compare
BPHYT_RS07935 +0.6 1.5 Rrf2 family transcriptional regulator compare
BPHYT_RS28790 +0.6 1.9 membrane protein compare
BPHYT_RS20115 +0.6 1.2 transcriptional regulator compare
BPHYT_RS21765 +0.6 1.6 IclR family transcriptional regulator compare
BPHYT_RS36130 +0.6 1.2 hypothetical protein compare
BPHYT_RS18780 +0.6 3.1 flagellar motor switch protein FliG compare
BPHYT_RS16055 +0.6 1.4 sugar ABC transporter permease compare
BPHYT_RS09755 +0.6 1.3 glycosyl transferase family 1 compare
BPHYT_RS18935 +0.6 3.1 flagellar biosynthesis regulator FlhF compare
BPHYT_RS26530 +0.6 1.0 amino acid dehydrogenase compare
BPHYT_RS23030 +0.6 1.1 gluconate 2-dehydrogenase compare
BPHYT_RS35655 +0.6 1.8 hypothetical protein compare
BPHYT_RS04455 +0.6 1.1 glycosyl transferase compare
BPHYT_RS16335 +0.6 0.9 membrane protein compare
BPHYT_RS18885 +0.6 3.4 flagellar basal body rod modification protein FlgD compare
BPHYT_RS24590 +0.6 1.0 DeoR faimly transcriptional regulator compare
BPHYT_RS16590 +0.6 4.0 Fis family transcriptional regulator compare
BPHYT_RS20880 +0.6 0.8 polyketide cyclase compare
BPHYT_RS19025 +0.6 3.0 transcriptional regulator compare
BPHYT_RS11900 +0.6 2.2 LysR family transcriptional regulator compare
BPHYT_RS22265 +0.6 0.9 hypothetical protein compare
BPHYT_RS18820 +0.6 1.6 flagellar biosynthesis protein FliO compare
BPHYT_RS12670 +0.6 1.9 cell division protein FtsB compare
BPHYT_RS18795 +0.6 4.3 flagellar export protein FliJ compare
BPHYT_RS34640 +0.6 1.4 TetR family transcriptional regulator compare
BPHYT_RS05085 +0.6 2.0 LysR family transcriptional regulator compare
BPHYT_RS03090 +0.6 1.2 hypothetical protein compare
BPHYT_RS03830 +0.6 1.8 hypothetical protein compare
BPHYT_RS35100 +0.6 1.7 ABC transporter substrate-binding protein compare
BPHYT_RS00815 +0.6 0.9 hypothetical protein compare
BPHYT_RS27445 +0.6 1.6 hypothetical protein compare
BPHYT_RS11635 +0.6 0.9 RNA polymerase subunit sigma-24 compare
BPHYT_RS21235 +0.6 1.8 hypothetical protein compare
BPHYT_RS27625 +0.6 1.4 transport-associated protein compare
BPHYT_RS02755 +0.6 1.4 cyd operon protein YbgT compare
BPHYT_RS16815 +0.6 0.7 ureidoglycolate hydrolase compare
BPHYT_RS27830 +0.6 1.9 universal stress protein A compare
BPHYT_RS10740 +0.6 1.2 LuxR family transcriptional regulator compare
BPHYT_RS18860 +0.6 2.7 flagellar P-ring protein FlgI compare
BPHYT_RS13285 +0.6 2.3 amino acid ABC transporter ATP-binding protein compare
BPHYT_RS24255 +0.6 1.6 hypothetical protein compare
BPHYT_RS29035 +0.5 1.3 arsenic transporter compare
BPHYT_RS20105 +0.5 1.6 nitrate ABC transporter substrate-binding protein compare
BPHYT_RS04500 +0.5 1.6 urease accessory protein UreF compare
BPHYT_RS29710 +0.5 1.7 FAD-binding molybdopterin dehydrogenase compare
BPHYT_RS24495 +0.5 1.5 transcriptional regulator compare
BPHYT_RS26540 +0.5 1.1 hypothetical protein compare
BPHYT_RS15135 +0.5 1.5 3-ketoacyl-ACP reductase compare
BPHYT_RS22860 +0.5 0.9 chemotaxis protein CheY compare
BPHYT_RS09390 +0.5 2.5 ABC transporter permease compare
BPHYT_RS12550 +0.5 0.8 GTP-binding protein HflX compare
BPHYT_RS23525 +0.5 1.1 hypothetical protein compare
BPHYT_RS05520 +0.5 1.4 transcriptional regulator compare
BPHYT_RS13815 +0.5 1.1 hypothetical protein compare
BPHYT_RS18875 +0.5 3.4 flagellar basal body rod protein FlgF compare
BPHYT_RS03375 +0.5 1.1 NAD(P) transhydrogenase compare
BPHYT_RS18800 +0.5 3.1 flagellar hook-length control protein compare
BPHYT_RS08135 +0.5 0.8 hypothetical protein compare
BPHYT_RS32360 +0.5 1.2 spermidine/putrescine ABC transporter ATPase compare
BPHYT_RS33170 +0.5 1.4 acetyltransferase compare
BPHYT_RS25285 +0.5 1.7 AraC family transcriptional regulator compare
BPHYT_RS20940 +0.5 1.2 citrate synthase compare
BPHYT_RS17825 +0.5 1.1 transcriptional regulator compare
BPHYT_RS35945 +0.5 1.5 response regulator receiver compare
BPHYT_RS18900 +0.5 4.3 flagella basal body P-ring formation protein FlgA compare
BPHYT_RS09195 +0.5 1.1 hypothetical protein compare
BPHYT_RS15260 +0.5 1.5 chorismate mutase compare
BPHYT_RS02155 +0.5 2.7 dithiobiotin synthetase compare
BPHYT_RS32860 +0.5 0.7 hypothetical protein compare
BPHYT_RS22540 +0.5 1.5 metal ABC transporter permease compare
BPHYT_RS29175 +0.5 1.3 ABC transporter ATP-binding protein compare
BPHYT_RS01340 +0.5 1.9 ChrB domain-containing protein compare
BPHYT_RS06485 +0.5 1.6 globin compare
BPHYT_RS18805 +0.5 2.3 flagellar basal body protein FliL compare
BPHYT_RS29810 +0.5 0.9 hexapeptide transferase compare
BPHYT_RS30085 +0.5 0.8 hypothetical protein compare
BPHYT_RS22225 +0.5 3.0 hypothetical protein compare
BPHYT_RS02040 +0.5 1.5 hypothetical protein compare
BPHYT_RS22930 +0.5 1.1 type II secretion system protein compare
BPHYT_RS10945 +0.5 0.9 2-deoxy-D-gluconate 3-dehydrogenase compare
BPHYT_RS34250 +0.5 3.6 ABC transporter for L-rhamnose/L-fucose/xylitol, substrate-binding component (from data) compare
BPHYT_RS24140 +0.5 1.9 2,5-dioxovalerate dehydrogenase compare
BPHYT_RS29235 +0.5 1.3 cell shape determination protein CcmA compare
BPHYT_RS32240 +0.5 0.9 chromosome replication initiation inhibitor protein compare
BPHYT_RS27065 +0.5 0.9 hypothetical protein compare
BPHYT_RS20725 +0.5 0.8 histidine kinase compare
BPHYT_RS09565 +0.5 0.6 acetyl-CoA acetyltransferase compare
BPHYT_RS15290 +0.5 1.3 tRNA-Arg compare
BPHYT_RS34155 +0.5 1.0 3-hydroxybutyryl-CoA dehydrogenase compare
BPHYT_RS26010 +0.5 1.8 ABC transporter substrate-binding protein compare
BPHYT_RS13320 +0.5 0.6 allantoate amidohydrolase compare
BPHYT_RS10875 +0.5 1.3 transporter compare
BPHYT_RS30610 +0.5 1.3 major facilitator transporter compare
BPHYT_RS25395 +0.5 1.4 3-oxoacyl-ACP reductase compare
BPHYT_RS27195 +0.5 1.1 LacI family transcriptional regulator compare
BPHYT_RS21625 +0.5 0.7 LysR family transcriptional regulator compare
BPHYT_RS25875 +0.5 1.0 type III secretion protein compare
BPHYT_RS10500 +0.5 0.9 acetolactate synthase compare
BPHYT_RS22420 +0.5 0.8 membrane protein compare
BPHYT_RS07070 +0.5 2.5 transcriptional regulator compare
BPHYT_RS17830 +0.5 2.1 histidine kinase compare
BPHYT_RS21070 +0.4 0.8 ferredoxin compare
BPHYT_RS13130 +0.4 1.0 metallophosphatase compare
BPHYT_RS31255 +0.4 1.0 cytochrome B561 compare
BPHYT_RS23975 +0.4 1.1 peroxidase compare
BPHYT_RS14955 +0.4 1.9 hypothetical protein compare
BPHYT_RS17185 +0.4 2.2 N-acetylglutamate synthase compare
BPHYT_RS22255 +0.4 1.6 hypothetical protein compare
BPHYT_RS06260 +0.4 2.1 MFS transporter compare
BPHYT_RS13565 +0.4 1.5 bacterioferritin compare
BPHYT_RS02985 +0.4 0.7 MaoC family dehydratase compare
BPHYT_RS09185 +0.4 1.3 hypothetical protein compare
BPHYT_RS18870 +0.4 2.5 flagellar basal body rod protein FlgG compare
BPHYT_RS15835 +0.4 1.6 RNA polymerase subunit sigma24 compare
BPHYT_RS03110 +0.4 0.7 MarR family transcriptional regulator compare
BPHYT_RS30890 +0.4 0.9 hypothetical protein compare
BPHYT_RS17035 +0.4 1.9 sugar kinase compare
BPHYT_RS16195 +0.4 1.7 carbon monoxide dehydrogenase subunit G compare
BPHYT_RS30420 +0.4 0.7 transcriptional regulator compare
BPHYT_RS08905 +0.4 1.1 peroxiredoxin compare
BPHYT_RS11005 +0.4 1.2 chromate transporter compare
BPHYT_RS20165 +0.4 1.6 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BPHYT_RS20290 +0.4 0.9 LysR family transcriptional regulator compare
BPHYT_RS25970 +0.4 0.7 urea amidolyase compare
BPHYT_RS34370 +0.4 2.1 ATPase compare
BPHYT_RS23990 +0.4 0.8 N-hydroxyarylamine O-acetyltransferase compare
BPHYT_RS10565 +0.4 1.2 NADP oxidoreductase compare
BPHYT_RS13185 +0.4 1.4 2,4-dienoyl-CoA reductase compare
BPHYT_RS36585 +0.4 1.2 hypothetical protein compare
BPHYT_RS31780 +0.4 1.7 indoleacetamide hydrolase compare
BPHYT_RS34565 +0.4 1.2 chemotaxis protein compare
BPHYT_RS30840 +0.4 0.7 small mechanosensitive ion channel protein MscS compare
BPHYT_RS11050 +0.4 0.9 molecular chaperone compare
BPHYT_RS18855 +0.4 2.6 flagellar rod assembly protein FlgJ compare
BPHYT_RS35615 +0.4 1.0 hypothetical protein compare
BPHYT_RS25450 +0.4 0.7 membrane protein compare
BPHYT_RS36250 +0.4 1.0 hypothetical protein compare
BPHYT_RS07795 +0.4 1.6 IclR family transcriptional regulator compare
BPHYT_RS03875 +0.4 1.0 dehydrogenase compare
BPHYT_RS15455 +0.4 1.6 hypothetical protein compare
BPHYT_RS30140 +0.4 0.4 3-methylitaconate isomerase compare
BPHYT_RS27230 +0.4 1.1 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source D-Alanine in Burkholderia phytofirmans PsJN

For carbon source D-Alanine across organisms