Experiment set1IT025 for Pseudomonas fluorescens FW300-N2C3

Compare to:

D-Xylose carbon source

200 most important genes:

  gene name fitness t score description  
AO356_14440 -5.4 -5.2 indole-3-glycerol-phosphate synthase compare
AO356_14435 -4.9 -6.7 anthranilate phosphoribosyltransferase compare
AO356_08635 -4.6 -9.3 ATP phosphoribosyltransferase regulatory subunit compare
AO356_12525 -4.6 -8.8 acetylglutamate kinase compare
AO356_09815 -4.6 -4.4 imidazoleglycerol-phosphate dehydratase compare
AO356_19520 -4.5 -4.4 isochorismatase compare
AO356_21415 -4.5 -10.5 3-isopropylmalate dehydrogenase compare
AO356_09375 -4.2 -23.3 glutamate synthase compare
AO356_16075 -4.2 -4.1 Fis family transcriptional regulator compare
AO356_09520 -4.2 -4.1 phosphoribosyl-AMP cyclohydrolase compare
AO356_13085 -4.2 -9.3 N-acetylglutamate synthase compare
AO356_18325 -4.0 -11.5 argininosuccinate synthase compare
AO356_21465 -4.0 -3.9 amidophosphoribosyltransferase compare
AO356_18275 -4.0 -12.9 ornithine carbamoyltransferase compare
AO356_06965 -4.0 -8.4 histidinol dehydrogenase compare
AO356_12020 -3.9 -13.1 pyruvate carboxylase subunit A compare
AO356_13250 -3.9 -10.0 dihydroxy-acid dehydratase compare
AO356_28500 -3.9 -8.9 Xylose isomerase (EC 5.3.1.5) (from data) conserved
AO356_13410 -3.9 -12.6 homoserine O-acetyltransferase compare
AO356_21405 -3.9 -5.2 3-isopropylmalate dehydratase compare
AO356_27695 -3.8 -8.1 Xylulose kinase (EC 2.7.1.17) (from data) conserved
AO356_21440 -3.8 -9.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_10915 -3.8 -9.2 tryptophan synthase subunit beta compare
AO356_16180 -3.8 -14.2 ketol-acid reductoisomerase compare
AO356_16175 -3.8 -8.4 acetolactate synthase 3 regulatory subunit compare
AO356_09810 -3.8 -3.7 imidazole glycerol phosphate synthase subunit HisH compare
AO356_15165 -3.8 -2.6 protein cII compare
AO356_06970 -3.7 -6.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_09370 -3.7 -11.4 glutamate synthase compare
AO356_13405 -3.7 -10.5 methionine biosynthesis protein MetW compare
AO356_19795 -3.6 -2.5 glycerol-3-phosphate dehydrogenase compare
AO356_05160 -3.5 -9.5 glucose-6-phosphate dehydrogenase compare
AO356_12520 -3.5 -2.4 orotate phosphoribosyltransferase compare
AO356_16170 -3.5 -11.7 acetolactate synthase 3 catalytic subunit compare
AO356_21400 -3.5 -8.0 isopropylmalate isomerase compare
AO356_28495 -3.5 -8.2 AraC family transcriptional regulator conserved
AO356_07110 -3.4 -5.2 ribonuclease G compare
AO356_09525 -3.4 -6.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_10910 -3.4 -8.9 tryptophan synthase subunit alpha compare
AO356_11035 -3.4 -10.9 phosphate ABC transporter permease compare
AO356_13605 -3.3 -9.6 5,10-methylenetetrahydrofolate reductase compare
AO356_12025 -3.3 -15.0 pyruvate carboxylase subunit B compare
AO356_28515 -3.2 -4.3 sugar ABC transporter permease compare
AO356_08905 -3.2 -2.2 glycosyl transferase compare
AO356_02175 -3.2 -8.1 transaldolase compare
AO356_11030 -3.2 -13.5 phosphate ABC transporter ATP-binding protein compare
AO356_21470 -3.1 -6.7 O-succinylhomoserine sulfhydrylase compare
AO356_08235 -3.1 -9.1 histidine kinase compare
AO356_06550 -3.1 -9.0 2-isopropylmalate synthase compare
AO356_09800 -3.1 -4.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_28510 -3.1 -4.0 xylose transporter compare
AO356_10300 -3.1 -5.8 3-phosphoglycerate dehydrogenase compare
AO356_00560 -3.0 -2.9 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_22200 -3.0 -8.8 sirohydrochlorin ferrochelatase compare
AO356_10350 -3.0 -13.9 phosphoenolpyruvate-protein phosphotransferase compare
AO356_03435 -3.0 -3.8 integration host factor subunit beta compare
AO356_28505 -2.9 -5.0 sugar ABC transporter substrate-binding protein compare
AO356_14295 -2.9 -2.8 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_06575 -2.9 -2.8 outer membrane protein assembly factor BamB compare
AO356_18245 -2.9 -8.0 DeoR family transcriptional regulator compare
AO356_00555 -2.9 -10.8 sulfite reductase compare
AO356_11045 -2.9 -12.3 phosphate-binding protein compare
AO356_06005 -2.9 -4.6 zinc metallopeptidase RseP compare
AO356_16095 -2.8 -9.3 molecular chaperone DnaK compare
AO356_11040 -2.8 -19.8 phosphate ABC transporter permease compare
AO356_01745 -2.8 -3.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_14420 -2.8 -14.4 anthranilate synthase compare
AO356_12780 -2.8 -7.5 argininosuccinate lyase compare
AO356_01750 -2.8 -2.7 ATP-dependent Clp protease proteolytic subunit compare
AO356_22795 -2.7 -1.9 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_14430 -2.7 -7.1 anthranilate synthase compare
AO356_27665 -2.7 -6.5 AraC family transcriptional regulator conserved
AO356_18805 -2.6 -1.8 magnesium transporter compare
AO356_19090 -2.6 -2.5 phosphoribosylaminoimidazole synthetase compare
AO356_16050 -2.6 -2.5 glucose-6-phosphate isomerase compare
AO356_08735 -2.5 -12.5 phosphoserine phosphatase compare
AO356_14335 -2.4 -4.8 rRNA methyltransferase compare
AO356_24845 -2.3 -3.1 ATPase compare
AO356_07480 -2.3 -3.4 carbamoyl phosphate synthase large subunit compare
AO356_12895 -2.3 -16.6 polyphosphate kinase compare
AO356_12015 -2.3 -8.4 LysR family transcriptional regulator compare
AO356_09795 -2.3 -1.5 imidazole glycerol phosphate synthase subunit HisF compare
AO356_19085 -2.2 -7.4 phosphoribosylglycinamide formyltransferase compare
AO356_11025 -2.2 -5.6 transcriptional regulator PhoU compare
AO356_04560 -2.2 -2.1 serine peptidase compare
AO356_08955 -2.2 -9.5 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
AO356_11005 -2.2 -11.1 histidine kinase compare
AO356_16080 -2.1 -11.9 ATPase compare
AO356_11315 -2.1 -1.4 shikimate dehydrogenase compare
AO356_17520 -2.0 -2.3 phosphoribosylformylglycinamidine synthase compare
AO356_05185 -2.0 -8.5 sugar ABC transporter permease compare
AO356_05180 -2.0 -6.9 sugar ABC transporter ATP-binding protein compare
AO356_12375 -1.9 -10.6 histidine kinase compare
AO356_20155 -1.9 -6.3 phosphate acyltransferase compare
AO356_00880 -1.9 -2.1 integration host factor subunit alpha compare
AO356_07915 -1.8 -3.3 exodeoxyribonuclease V subunit beta compare
AO356_06385 -1.8 -3.3 recombinase XerD compare
AO356_04575 -1.8 -9.4 RNA polymerase subunit sigma compare
AO356_17985 -1.8 -6.2 cold-shock protein compare
AO356_08875 -1.8 -3.1 toluene tolerance protein compare
AO356_12640 -1.8 -2.6 cytochrome C compare
AO356_07910 -1.7 -1.6 exodeoxyribonuclease V subunit alpha compare
AO356_05190 -1.7 -11.9 sugar ABC transporter permease compare
AO356_02580 -1.7 -3.7 GntR family transcriptional regulator compare
AO356_13445 -1.6 -1.5 dihydroorotase compare
AO356_18730 -1.6 -7.6 arginine N-succinyltransferase compare
AO356_27685 -1.6 -2.8 ABC transporter ATP-binding protein compare
AO356_19425 -1.6 -1.7 lipid A biosynthesis lauroyl acyltransferase compare
AO356_03070 -1.6 -8.4 histidine kinase compare
AO356_18020 -1.6 -3.2 ATP-dependent DNA helicase RuvA compare
AO356_00385 -1.5 -2.0 peptidylprolyl isomerase compare
AO356_09765 -1.5 -2.6 sulfurtransferase compare
AO356_27170 -1.5 -3.5 XRE family transcriptional regulator compare
AO356_25750 -1.5 -2.6 GntR family transcriptional regulator compare
AO356_01245 -1.5 -7.0 glycogen branching protein compare
AO356_17075 -1.4 -1.3 cytochrome C compare
AO356_27680 -1.4 -4.5 sugar ABC transporter permease compare
AO356_17970 -1.4 -10.3 porin compare
AO356_17065 -1.4 -0.9 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
AO356_16085 -1.3 -4.6 MFS transporter compare
AO356_08895 -1.3 -1.7 GlcNAc-PI de-N-acetylase compare
AO356_11610 -1.3 -1.7 glycerol acyltransferase compare
AO356_28745 -1.3 -4.3 MFS transporter compare
AO356_03715 -1.3 -6.8 chemotaxis protein CheA compare
AO356_23420 -1.3 -6.0 carboxynorspermidine decarboxylase compare
AO356_28760 -1.3 -5.0 Xylonate dehydratase (EC 4.2.1.82) (from data) conserved
AO356_18910 -1.3 -7.9 chemotaxis protein compare
AO356_05455 -1.3 -3.3 hypothetical protein compare
AO356_08585 -1.2 -3.1 50S ribosomal protein L9 compare
AO356_29160 -1.2 -2.3 (2Fe-2S)-binding protein compare
AO356_02955 -1.2 -1.6 hypothetical protein compare
AO356_09540 -1.2 -1.0 twin-arginine protein translocation system subunit TatC compare
AO356_06325 -1.2 -1.3 plasmid stabilization protein ParE compare
AO356_07020 -1.2 -1.7 LPS export ABC transporter periplasmic protein LptC compare
AO356_01315 -1.2 -8.1 aldose epimerase conserved
AO356_26645 -1.2 -1.3 crotonase compare
AO356_08930 -1.2 -2.2 heptose kinase compare
AO356_16655 -1.2 -6.2 2-alkenal reductase compare
AO356_27690 -1.1 -2.6 mannitol dehydrogenase compare
AO356_01095 -1.1 -2.9 glycolate oxidase compare
AO356_19335 -1.1 -7.9 peptidase S41 compare
AO356_15815 -1.1 -1.5 gamma-glutamyl kinase compare
AO356_01740 -1.1 -2.5 DNA-binding protein compare
AO356_07005 -1.1 -1.5 ABC transporter ATP-binding protein compare
AO356_14395 -1.1 -8.4 polyamine ABC transporter substrate-binding protein compare
AO356_30345 -1.1 -3.7 IclR family transcriptional regulator compare
AO356_03805 -1.1 -6.8 chemotaxis protein CheY compare
AO356_12485 -1.1 -3.2 DNA-directed RNA polymerase subunit omega compare
AO356_02735 -1.1 -2.5 type III secretion regulator InvE compare
AO356_22785 -1.1 -3.3 hypothetical protein compare
AO356_00810 -1.1 -1.6 hypothetical protein compare
AO356_14400 -1.1 -4.4 polyamine ABC transporter permease compare
AO356_02315 -1.0 -3.0 DNA topoisomerase I compare
AO356_23425 -1.0 -3.6 saccharopine dehydrogenase compare
AO356_03800 -1.0 -1.3 histidine kinase compare
AO356_13480 -1.0 -1.8 pilus assembly protein PilG compare
AO356_05195 -1.0 -6.0 sugar ABC transporter substrate-binding protein compare
AO356_27445 -1.0 -4.3 IclR family transcriptional regulator compare
AO356_12380 -1.0 -4.1 ATP-dependent DNA helicase RecG compare
AO356_22825 -1.0 -2.4 transcriptional regulator compare
AO356_27670 -1.0 -3.3 sugar ABC transporter substrate-binding protein compare
AO356_14540 -1.0 -1.5 biotin--protein ligase compare
AO356_03725 -1.0 -1.4 histidine kinase compare
AO356_05165 -0.9 -7.0 transcriptional regulator compare
AO356_08985 -0.9 -1.1 hypothetical protein compare
AO356_12635 -0.9 -4.9 XRE family transcriptional regulator compare
AO356_03810 -0.9 -3.3 anti-anti-sigma factor compare
AO356_22870 -0.9 -2.5 glycerate kinase compare
AO356_05175 -0.9 -6.5 porin compare
AO356_24755 -0.9 -1.4 type II secretion system protein GspH compare
AO356_07105 -0.9 -3.9 hypothetical protein compare
AO356_03095 -0.9 -4.5 protease HtpX compare
AO356_03305 -0.9 -1.6 ATPase compare
AO356_10585 -0.9 -6.0 hypothetical protein compare
AO356_27245 -0.9 -1.9 hypothetical protein compare
AO356_07055 -0.9 -1.3 phosphocarrier protein HPr compare
AO356_13155 -0.9 -6.3 spermidine/putrescine ABC transporter substrate-binding protein compare
AO356_07385 -0.9 -1.1 tRNA-Thr compare
AO356_08645 -0.9 -2.8 hypothetical protein compare
AO356_22145 -0.9 -4.8 ATP-dependent Clp protease adaptor ClpS compare
AO356_10345 -0.9 -2.3 RNA pyrophosphohydrolase compare
AO356_17485 -0.9 -2.9 elongation factor 4 compare
AO356_06990 -0.9 -3.0 toluene tolerance protein compare
AO356_06085 -0.8 -2.6 thiamine biosynthesis protein ThiF compare
AO356_11060 -0.8 -6.0 aldose epimerase compare
AO356_27675 -0.8 -2.7 sugar ABC transporter permease compare
AO356_29270 -0.8 -1.3 ABC transporter permease compare
AO356_17035 -0.8 -3.5 ATPase compare
AO356_03485 -0.8 -4.4 N-ethylammeline chlorohydrolase compare
AO356_27150 -0.8 -2.2 threonine synthase compare
AO356_15380 -0.8 -3.8 hypothetical protein compare
AO356_10170 -0.8 -1.2 chemotaxis protein CheY compare
AO356_10485 -0.8 -1.9 hypothetical protein compare
AO356_27215 -0.8 -2.0 hypothetical protein compare
AO356_03885 -0.8 -4.9 beta-ketoacyl-ACP synthase compare
AO356_22950 -0.8 -1.0 peptidylprolyl isomerase compare
AO356_02440 -0.8 -4.3 cytochrome C oxidase Cbb3 compare
AO356_13165 -0.8 -4.9 transporter compare
AO356_13320 -0.8 -2.0 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO356_14870 -0.8 -3.5 dTDP-4-dehydrorhamnose reductase compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source D-Xylose in Pseudomonas fluorescens FW300-N2C3

For carbon source D-Xylose across organisms