Experiment set1IT025 for Pseudomonas fluorescens FW300-N1B4

Compare to:

D-Galactose carbon source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_412 -5.1 -3.5 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf1N1B4_6 -4.0 -4.7 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_2880 -3.9 -10.6 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_1307 -3.6 -2.5 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_1626 -3.5 -6.2 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_1831 -3.4 -11.3 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_742 -3.3 -7.4 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_5665 -3.3 -6.2 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_2303 -3.3 -14.7 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_399 -3.3 -2.2 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
Pf1N1B4_1533 -3.2 -8.0 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_2547 -3.2 -3.8 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_15 -3.2 -4.8 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_1534 -3.2 -18.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_2548 -3.1 -7.4 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_5666 -3.1 -4.1 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_2545 -3.0 -13.7 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_2338 -3.0 -8.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_413 -3.0 -12.4 L-arabinolactonase (EC 3.1.1.15) (from data) conserved
Pf1N1B4_2879 -2.9 -7.6 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_1624 -2.9 -9.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_2858 -2.9 -11.1 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_12 -2.8 -8.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2384 -2.8 -9.8 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_1434 -2.8 -8.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_1408 -2.8 -5.1 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_1830 -2.7 -9.0 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_1067 -2.7 -5.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_2282 -2.7 -9.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2878 -2.7 -8.2 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_2272 -2.7 -4.8 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_847 -2.7 -8.6 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_1565 -2.7 -4.7 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_3506 -2.6 -8.1 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_1653 -2.4 -7.7 Branched-chain amino acid transport protein AzlC compare
Pf1N1B4_2549 -2.4 -7.7 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_3697 -2.4 -8.8 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_3812 -2.4 -8.5 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_398 -2.4 -5.9 Galactonate dehydratase (EC 4.2.1.6) conserved
Pf1N1B4_410 -2.3 -9.3 ABC transporter for D-galactose/L-arabinose, ATPase component (from data) conserved
Pf1N1B4_411 -2.3 -7.2 ABC transporter for D-galactose/L-arabinose, substrate-binding component (from data) conserved
Pf1N1B4_350 -2.3 -7.1 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_4065 -2.3 -7.9 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_1568 -2.3 -3.7 Twin-arginine translocation protein TatB compare
Pf1N1B4_1057 -2.2 -3.6 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_762 -2.2 -6.7 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_2337 -2.2 -5.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_2112 -2.2 -12.8 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_1617 -2.2 -7.4 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_1627 -2.2 -5.1 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_2011 -2.1 -9.0 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_2859 -2.1 -13.4 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_1906 -2.0 -3.7 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_1315 -2.0 -7.2 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_2009 -2.0 -5.6 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_409 -1.9 -5.0 ABC transporter for D-galactose/L-arabinose, permease component (from data) compare
Pf1N1B4_3081 -1.9 -15.8 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_2280 -1.9 -8.4 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_2486 -1.9 -3.0 hypothetical protein compare
Pf1N1B4_1625 -1.9 -3.5 FIG00956267: hypothetical protein compare
Pf1N1B4_2540 -1.9 -11.3 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) compare
Pf1N1B4_3518 -1.8 -3.2 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_2010 -1.8 -5.7 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_652 -1.8 -8.4 Sensory box histidine kinase compare
Pf1N1B4_2541 -1.8 -6.6 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf1N1B4_2706 -1.8 -3.4 FIG00954871: hypothetical protein compare
Pf1N1B4_1668 -1.7 -5.0 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_1785 -1.7 -3.2 Uricase (urate oxidase) (EC 1.7.3.3) compare
Pf1N1B4_3878 -1.7 -6.7 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf1N1B4_962 -1.6 -8.5 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf1N1B4_4028 -1.6 -3.7 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_4038 -1.6 -2.7 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_4830 -1.6 -3.1 Membrane fusion component of tripartite multidrug resistance system compare
Pf1N1B4_397 -1.6 -6.8 Hexuronate transporter conserved
Pf1N1B4_749 -1.6 -2.4 hypothetical protein compare
Pf1N1B4_2958 -1.6 -2.5 Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) compare
Pf1N1B4_4299 -1.5 -3.2 sensor histidine kinase compare
Pf1N1B4_1566 -1.5 -6.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_1569 -1.4 -9.2 Twin-arginine translocation protein TatC compare
Pf1N1B4_4295 -1.4 -3.1 FIG00954434: hypothetical protein compare
Pf1N1B4_3871 -1.4 -9.8 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_769 -1.4 -5.4 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_3879 -1.4 -9.7 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf1N1B4_257 -1.4 -5.1 sensor histidine kinase/response regulator compare
Pf1N1B4_593 -1.4 -5.3 Glucose ABC transporter, ATP-binding subunit (EC 3.6.3.-) compare
Pf1N1B4_4041 -1.4 -3.0 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_2487 -1.3 -6.8 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_4123 -1.3 -2.3 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf1N1B4_5275 -1.3 -2.1 hypothetical protein compare
Pf1N1B4_5018 -1.3 -2.7 FIG00962345: hypothetical protein compare
Pf1N1B4_1590 -1.3 -4.7 Histidine utilization repressor compare
Pf1N1B4_4030 -1.3 -3.1 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_1608 -1.3 -2.7 FIG00956533: hypothetical protein compare
Pf1N1B4_3849 -1.3 -3.2 Transcriptional regulator, GntR family compare
Pf1N1B4_3119 -1.3 -2.4 Holin compare
Pf1N1B4_3713 -1.3 -1.8 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
Pf1N1B4_961 -1.3 -9.4 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf1N1B4_3451 -1.3 -3.0 Aspartokinase (EC 2.7.2.4) compare
Pf1N1B4_5512 -1.2 -2.0 hypothetical protein compare
Pf1N1B4_501 -1.2 -2.1 Flp pilus assembly protein RcpC/CpaB compare
Pf1N1B4_3870 -1.2 -9.9 Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion compare
Pf1N1B4_1781 -1.2 -2.0 hypothetical protein compare
Pf1N1B4_594 -1.2 -5.2 Glucose ABC transport system, inner membrane component 2 compare
Pf1N1B4_106 -1.2 -3.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_4029 -1.2 -2.9 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_3876 -1.2 -5.9 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf1N1B4_2021 -1.2 -1.4 hypothetical protein compare
Pf1N1B4_648 -1.2 -10.8 Outer membrane porin, OprD family compare
Pf1N1B4_960 -1.2 -7.1 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf1N1B4_4477 -1.2 -2.9 Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4) compare
Pf1N1B4_3880 -1.2 -7.8 hypothetical protein compare
Pf1N1B4_2912 -1.2 -1.8 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_899 -1.2 -1.6 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf1N1B4_1614 -1.2 -2.3 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf1N1B4_595 -1.2 -6.5 Glucose ABC transport system, inner membrane component 1 compare
Pf1N1B4_2209 -1.2 -6.3 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_596 -1.1 -3.4 Glucose ABC transport system, periplasmic sugar-binding protein compare
Pf1N1B4_7 -1.1 -4.1 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf1N1B4_1430 -1.1 -1.7 Predicted signal transduction protein compare
Pf1N1B4_2225 -1.1 -7.3 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf1N1B4_5533 -1.1 -2.7 cobS protein, putative compare
Pf1N1B4_3527 -1.1 -3.5 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit compare
Pf1N1B4_348 -1.1 -3.1 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_4851 -1.1 -1.9 Transcriptional regulator of various polyols utilization, AraC family compare
Pf1N1B4_4253 -1.1 -2.0 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_1317 -1.1 -1.9 Sensor histidine kinase/response regulator compare
Pf1N1B4_3595 -1.1 -1.8 Flagellin protein FlaG compare
Pf1N1B4_327 -1.1 -1.9 hypothetical protein compare
Pf1N1B4_4039 -1.1 -4.5 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_4517 -1.1 -2.4 Dihydropyrimidinase (EC 3.5.2.2) compare
Pf1N1B4_2943 -1.1 -2.3 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_647 -1.0 -5.2 hypothetical protein compare
Pf1N1B4_1234 -1.0 -3.0 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_3685 -1.0 -3.2 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) compare
Pf1N1B4_866 -1.0 -1.7 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_58 -1.0 -4.3 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_4297 -1.0 -2.3 FIG00966599: hypothetical protein compare
Pf1N1B4_3325 -1.0 -1.4 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_1878 -1.0 -5.7 Cytochrome c4 compare
Pf1N1B4_4494 -1.0 -2.9 hypothetical protein compare
Pf1N1B4_3872 -1.0 -5.5 Putative analog of CcoH, COG3198 compare
Pf1N1B4_22 -1.0 -3.9 Transcriptional regulator, TetR family compare
Pf1N1B4_1691 -1.0 -1.0 hypothetical protein compare
Pf1N1B4_4040 -1.0 -2.2 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_3869 -0.9 -6.7 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf1N1B4_5393 -0.9 -1.6 hypothetical protein compare
Pf1N1B4_56 -0.9 -2.4 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_4961 -0.9 -2.2 FIG00441227: hypothetical protein compare
Pf1N1B4_980 -0.9 -1.9 hypothetical protein compare
Pf1N1B4_5991 -0.9 -1.8 Transcriptional regulator, AraC family compare
Pf1N1B4_1535 -0.9 -2.4 hypothetical protein compare
Pf1N1B4_598 -0.9 -3.0 Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster compare
Pf1N1B4_3241 -0.9 -1.7 hypothetical protein compare
Pf1N1B4_5513 -0.9 -2.2 hypothetical protein compare
Pf1N1B4_4939 -0.9 -2.6 sodium/hydrogen exchanger family protein compare
Pf1N1B4_2269 -0.9 -1.7 Purine nucleoside phosphorylase (EC 2.4.2.1) compare
Pf1N1B4_718 -0.9 -4.0 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Pf1N1B4_578 -0.9 -1.7 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_3939 -0.9 -2.5 FIG00953489: hypothetical protein compare
Pf1N1B4_2537 -0.9 -2.5 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf1N1B4_5721 -0.9 -1.8 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_2850 -0.9 -4.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_4729 -0.9 -1.6 Hemolysin-type calcium-binding region compare
Pf1N1B4_602 -0.9 -2.2 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf1N1B4_5552 -0.9 -1.9 hypothetical protein compare
Pf1N1B4_4560 -0.9 -1.8 Transcriptional regulator, MerR family compare
Pf1N1B4_767 -0.9 -3.0 Glycerol kinase (EC 2.7.1.30) compare
Pf1N1B4_275 -0.9 -1.4 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_616 -0.9 -2.1 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_403 -0.8 -1.1 FIG00965925: hypothetical protein compare
Pf1N1B4_3866 -0.8 -1.6 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf1N1B4_4603 -0.8 -1.8 hypothetical protein compare
Pf1N1B4_5556 -0.8 -2.1 hypothetical protein compare
Pf1N1B4_1558 -0.8 -1.9 Transcriptional regulator PhaD compare
Pf1N1B4_358 -0.8 -4.0 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf1N1B4_717 -0.8 -3.6 Iron-regulated protein A precursor compare
Pf1N1B4_32 -0.8 -2.2 Transcriptional regulator, TetR family compare
Pf1N1B4_3143 -0.8 -2.0 RecA protein compare
Pf1N1B4_5859 -0.8 -2.4 Glutamate carboxypeptidase (EC 3.4.17.11) compare
Pf1N1B4_4100 -0.8 -1.9 probable transmembrane protein compare
Pf1N1B4_4132 -0.8 -1.0 Mobile element protein compare
Pf1N1B4_3446 -0.8 -1.6 Putative GTPases (G3E family) compare
Pf1N1B4_678 -0.8 -4.2 Pyruvate kinase (EC 2.7.1.40) compare
Pf1N1B4_724 -0.8 -2.0 DNA-binding response regulator ColR compare
Pf1N1B4_208 -0.8 -1.3 Two-component system response regulator QseB compare
Pf1N1B4_27 -0.8 -2.9 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_544 -0.8 -1.5 Small-conductance mechanosensitive channel compare
Pf1N1B4_3127 -0.8 -1.8 Phage tail/DNA circulation protein compare
Pf1N1B4_4486 -0.8 -1.9 Outer membrane protein (porin) compare
Pf1N1B4_3647 -0.8 -5.1 Cytochrome c heme lyase subunit CcmH compare
Pf1N1B4_2377 -0.8 -3.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_4678 -0.8 -2.4 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf1N1B4_5661 -0.8 -4.1 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf1N1B4_1402 -0.8 -1.5 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) compare
Pf1N1B4_821 -0.8 -4.6 Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2) compare
Pf1N1B4_2322 -0.8 -1.6 FIG015547: peptidase, M16 family compare
Pf1N1B4_4143 -0.8 -2.1 hypothetical protein compare
Pf1N1B4_1891 -0.8 -1.6 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Pf1N1B4_96 -0.8 -1.9 Selenophosphate-dependent tRNA 2-selenouridine synthase compare
Pf1N1B4_612 -0.8 -2.3 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source D-Galactose in Pseudomonas fluorescens FW300-N1B4

For carbon source D-Galactose across organisms