Experiment set1IT025 for Sinorhizobium meliloti 1021

Compare to:

L-Lysine carbon source

200 most important genes:

  gene name fitness t score description  
SMc02048 -11.0 -6.9 glycine cleavage system protein H compare
SMc04882 -9.4 -6.5 transcriptional regulator compare
SMc02766 -8.7 -11.9 tryptophan synthase subunit beta compare
SMc01843 -8.6 -8.4 5,10-methylenetetrahydrofolate reductase compare
SMc04405 -8.5 -5.9 3-isopropylmalate dehydrogenase compare
SMc02767 -8.5 -8.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc02245 -8.4 -5.8 dihydroorotate dehydrogenase 2 compare
SMc02899 -8.3 -9.9 prephenate dehydratase compare
SMc00235 -8.2 -5.7 anthranilate phosphoribosyltransferase compare
SMc00236 -8.2 -5.6 Indole-3-glycerol phosphate synthase compare
SMc00640 -8.1 -5.6 phosphoserine aminotransferase compare
SMc00917 -8.1 -5.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc02569 -8.0 -5.6 imidazole glycerol phosphate synthase subunit HisF compare
SMc00614 -8.0 -5.6 phosphoribosylglycinamide formyltransferase compare
SMc01726 -8.0 -7.8 acetylglutamate kinase compare
SMc02838 -8.0 -7.8 phosphoglyceromutase compare
SMc02707 -7.9 -4.4 hypothetical protein compare
SMc01801 -7.9 -5.3 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc04045 -7.7 -5.4 dihydroxy-acid dehydratase compare
SMc01028 -7.7 -9.2 phosphopyruvate hydratase compare
SMc01431 -7.7 -5.3 acetolactate synthase 3 catalytic subunit compare
SMc03797 -7.6 -10.5 homoserine O-succinyltransferase compare
SMc02717 -7.6 -10.4 2-isopropylmalate synthase compare
SMc01494 -7.6 -11.6 phosphoserine phosphatase compare
SMc02137 -7.4 -5.1 ornithine carbamoyltransferase compare
SMc00918 -7.4 -8.8 ATP phosphoribosyltransferase regulatory subunit compare
SMc03823 -7.3 -14.0 isopropylmalate isomerase large subunit compare
SMc02562 -7.3 -7.1 phosphoenolpyruvate carboxykinase compare
SM_b21175 -7.2 -6.5 phosphate uptake ABC transporter permease compare
SMc00963 -7.1 -6.9 hypothetical protein compare
SMc02217 -7.1 -6.9 O-succinylhomoserine sulfhydrylase compare
SMc00293 -7.0 -13.5 homoserine dehydrogenase compare
SMc02765 -7.0 -12.4 tryptophan synthase subunit alpha compare
SMc02725 -6.8 -13.1 anthranilate synthase compare
SMc02425 -6.8 -4.7 transcriptional regulator compare
SMa1635 -6.8 -2.7 hypothetical protein compare
SMc00494 -6.8 -2.6 phosphoribosylformylglycinamidine synthase subunit PurS compare
SMc00554 -6.7 -8.0 amidophosphoribosyltransferase compare
SMc03112 -6.7 -18.9 B12-dependent methionine synthase compare
SMc00412 -6.7 -4.6 orotidine 5'-phosphate decarboxylase compare
SMc03776 -6.7 -4.6 gamma-glutamyl kinase compare
SMc04002 -6.6 -8.8 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
SMc00993 -6.6 -10.1 phosphoribosylamine--glycine ligase compare
SMc00495 -6.6 -5.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc03974 -6.5 -8.9 hypothetical protein compare
SMc00615 -6.5 -9.1 phosphoribosylaminoimidazole synthetase compare
SMc02503 -6.4 -9.5 hypothetical protein compare
SMc00488 -6.4 -16.3 phosphoribosylformylglycinamidine synthase II compare
SMc01360 -6.3 -4.4 aspartate carbamoyltransferase catalytic subunit compare
SMc02307 -6.2 -7.4 histidinol dehydrogenase compare
SMc02049 -6.1 -21.6 glycine dehydrogenase compare
SMc04088 -6.0 -8.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SMc00493 -6.0 -8.2 phosphoribosylformylglycinamidine synthase I compare
SMc00768 -6.0 -13.3 isocitrate lyase compare
SMc03981 -6.0 -4.7 phosphoglycerate kinase compare
SMc02047 -6.0 -7.0 glycine cleavage system aminomethyltransferase T compare
SMc01881 -5.9 -5.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc00025 -5.9 -10.6 pyruvate phosphate dikinase compare
SMc01361 -5.9 -6.7 dihydroorotase compare
SMc01004 -5.9 -8.9 phosphoribosyl-AMP cyclohydrolase compare
SMc03229 -5.7 -3.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc00815 -5.7 -3.8 inosine 5'-monophosphate dehydrogenase compare
SMc00711 -5.7 -5.6 cyclohexadienyl dehydrogenase compare
SMc00131 -5.7 -16.9 transcriptional regulator compare
SMc04385 -5.7 -7.2 L-2-aminoadipate semialdehyde dehydrogenase (EC 1.2.1.31) (from data) compare
SMc02166 -5.7 -12.0 dihydroorotase compare
SMc04085 -5.6 -3.9 hypothetical protein compare
SMc02504 -5.6 -5.5 transcriptional regulator compare
SMc03979 -5.5 -3.8 glyceraldehyde-3-phosphate dehydrogenase compare
SM_b21176 -5.5 -6.1 phosphate uptake ABC transporter substrate-binding protein precursor compare
SM_b21181 -5.5 -10.5 glutaryl-CoA dehydrogenase compare
SM_b21174 -5.5 -6.9 phosphate uptake ABC transporter permease compare
SMc00769 -5.4 -13.6 hypothetical protein compare
SM_b21182 -5.4 -10.6 hypothetical protein compare
SMc01441 -5.3 -8.2 membrane bound protease compare
SMc01880 -5.3 -3.7 pantoate--beta-alanine ligase compare
SMc02165 -5.3 -9.6 orotate phosphoribosyltransferase compare
SMc04384 -5.2 -10.7 (R)-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) (from data) compare
SMc02755 -5.2 -8.0 S-adenosyl-L-homocysteine hydrolase compare
SMc03763 -5.2 -3.6 cytosine-specific methyltransferase compare
SMc02570 -5.0 -4.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc03879 -5.0 -9.6 Acetyl-CoA acetyltransferase (EC 2.3.1.9) (from data) conserved
SMc03069 -4.9 -3.0 6-phosphogluconolactonase compare
SMc01569 -4.9 -2.6 carbamoyl phosphate synthase small subunit compare
SMc02124 -4.8 -17.5 nitrite reductase compare
SMc00296 -4.8 -12.7 POLY3-hydroxybutyrate polymerase compare
SMc02227 -4.7 -8.6 fatty oxidation complex enoyl-COA hydratase/3-hydroxyacyl-COA dehydrogenase/3-hydroxybutyryl-COA epimerase compare
SMc04001 -4.7 -1.8 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SMc03777 -4.6 -10.5 gamma-glutamyl phosphate reductase compare
SMc03978 -4.6 -4.5 transketolase compare
SMc02574 -4.6 -5.8 imidazoleglycerol-phosphate dehydratase compare
SMc00726 -4.5 -1.7 thiol:disulfide interchange redox-active center transmembrane protein compare
SMc01215 -4.5 -4.3 carbamoyl phosphate synthase large subunit compare
SMc02138 -4.4 -6.3 acetylornithine transaminase compare
SMc02246 -4.4 -1.7 hypothetical protein compare
SMc00017 -4.4 -2.4 homoserine kinase compare
SM_b21177 -4.4 -9.0 phosphate uptake ABC transporter ATP-binding protein compare
SMc03795 -4.4 -2.4 isopropylmalate isomerase small subunit compare
SMc02123 -4.4 -5.8 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
SMc00876 -4.3 -9.7 ATP-binding MRP protein compare
SMc00302 -4.3 -4.7 hypothetical protein compare
SMc00641 -4.3 -6.0 D-3-phosphoglycerate dehydrogenase compare
SMc00092 -4.2 -15.0 phosphoadenosine phosphosulfate reductase compare
SMc01440 -4.2 -8.9 hydrolase serine protease transmembrane protein compare
SMc04386 -3.9 -6.1 2-aminoadipate:2-oxoglutarate aminotransferase (EC 2.6.1.39) (from data) compare
SMc03826 -3.8 -6.3 argininosuccinate synthase compare
SMc02228 -3.8 -9.3 acetyl-CoA acetyltransferase compare
SMc00090 -3.8 -12.1 sulfate adenylyltransferase compare
SMc00709 -3.8 -6.4 hypothetical protein compare
SMc04346 -3.7 -4.3 ketol-acid reductoisomerase compare
SMc04383 -3.7 -5.9 putative hydrolase, required for lysine catabolism (from data) compare
SMc01770 -3.6 -3.2 serine hydroxymethyltransferase compare
SMc01053 -3.6 -5.9 siroheme synthase compare
SMc00450 -3.4 -4.2 protoheme IX farnesyltransferase compare
SMc01054 -3.3 -4.1 required for sulfate utilization, putative electron source for sulfite reductase CysI (from data) compare
SMc01430 -3.3 -5.8 acetolactate synthase 3 regulatory subunit compare
SMc02229 -3.3 -17.8 acyl-CoA dehydrogenase compare
SMc00091 -3.2 -12.7 sulfate adenylyltransferase compare
SMc02308 -3.1 -1.8 hypothetical protein compare
SMc01842 -2.8 -3.2 methyltransferase transcription regulator protein compare
SMc01206 -2.7 -2.5 queuine tRNA-ribosyltransferase compare
SMc02121 -2.7 -2.8 ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, ATPase component (from data) compare
SMc02572 -2.6 -1.3 imidazole glycerol phosphate synthase subunit HisH compare
SMc03849 -2.5 -2.3 heme exporter C (cytochrome C-type biogenesis protein) transmembrane compare
SMc02363 -2.5 -4.4 cytochrome C-type biogenesis transmembrane protein compare
SMc01124 -2.4 -6.9 PII uridylyl-transferase compare
SMc00414 -2.4 -10.5 hypothetical protein compare
SMc01438 -2.4 -7.8 protease precursor signal peptide protein compare
SMc02058 -2.4 -4.7 YAJC protein compare
SMc02102 -2.3 -5.7 hypothetical protein compare
SMc02856 -2.2 -12.4 penicillin-binding protein compare
SMc00982 -2.2 -8.9 dioxygenase compare
SMc01495 -2.2 -5.3 transcriptional regulator compare
SMc02853 -2.1 -6.5 hypothetical protein compare
SMc02975 -2.1 -8.4 phosphoenolpyruvate carboxykinase regulator transcription regulator protein compare
SMc00010 -2.1 -2.9 cytochrome C oxidase polypeptide I transmembrane protein compare
SMa2020 -2.0 -8.9 Transcriptional regulator compare
SMc00067 -2.0 -8.4 outer-membranne lipoprotein compare
SMc02786 -1.9 -8.3 translocase transmembrane protein compare
SMc01501 -1.9 -2.9 mannitol 2-dehydrogenase compare
SMa2215 -1.9 -3.5 GntR family transcriptional regulator compare
SMc04296 -1.9 -2.0 cell division protein FtsZ compare
SMc02435 -1.8 -4.0 methyltransferase compare
SMc02640 -1.8 -6.0 UDP-glucuronic acid epimerase compare
SMc02581 -1.8 -10.9 malate synthase G compare
SMc01505 -1.8 -2.5 hypothetical protein compare
SMc00580 -1.8 -6.1 4-hydroxythreonine-4-phosphate dehydrogenase compare
SM_b20198 -1.7 -7.0 ribulose bisophosphate carboxylase compare
SMc01768 -1.7 -5.3 transcriptional regulator compare
SMc00138 -1.7 -11.6 L-lysine ABC transporter, permease component 2 (from data) conserved
SMc02753 -1.7 -2.2 PTS system transporter subunit IIA compare
SMc02858 -1.7 -1.1 chaperone protein DnaJ compare
SMc00513 -1.7 -6.5 amino acid-binding periplasmic protein compare
SMc02362 -1.6 -3.5 cytochrome c-type biogenesis protein CcmE compare
SMc01368 -1.6 -5.1 transport transmembrane protein compare
SMc02050 -1.6 -4.3 trigger factor compare
SMc01800 -1.6 -1.8 cytochrome C oxidase assembly transmembrane protein compare
SMc02234 -1.6 -2.5 hypothetical protein compare
SMc01845 -1.5 -3.3 transglycosylase transmembrane protein compare
SMc01007 -1.5 -2.4 hypothetical protein compare
SM_b20197 -1.5 -4.5 ribulose-1,5-bisphosphate carboxylase small subunit (EC 4.1.1.39) (from data) compare
SMc00139 -1.5 -7.4 L-lysine ABC transporter, permease component 1 (from data) conserved
SMc00295 -1.5 -0.7 hypothetical protein compare
SMc00987 -1.5 -3.3 hypothetical protein compare
SMc02897 -1.5 -3.4 cytochrome C transmembrane protein compare
SMc00981 -1.5 -6.4 ferredoxin protein compare
SMc03993 -1.5 -5.2 hypothetical protein compare
SMc02112 -1.5 -6.9 hypothetical protein compare
SMc00013 -1.5 -2.1 cytochrome C oxidase subunit III transmembrane protein compare
SMc03133 -1.5 -9.3 amino-acid transport system permease ABC transporter protein compare
SMc01183 -1.4 -2.1 LexA repressor compare
SMc02172 -1.4 -7.7 transcriptional regulator compare
SMc00352 -1.4 -2.1 acetyltransferase compare
SMc01164 -1.4 -6.2 hypothetical protein compare
SMc00140 -1.4 -7.7 L-lysine ABC transporter, substrate-binding component (from data) compare
SM_b20148 -1.4 -4.8 transcriptional regulator compare
SMc00294 -1.4 -3.2 aminotransferase compare
SMc03850 -1.4 -1.6 heme exporter D (cytochrome C-type biogenesis protein) transmembrane compare
SMc02232 -1.4 -3.9 hypothetical protein compare
SMc01454 -1.3 -8.0 hypothetical protein compare
SMc02115 -1.3 -1.1 hypothetical protein compare
SM_b20307 -1.3 -1.2 dihydroxyacetone kinase compare
SMc02833 -1.3 -2.9 penicillin-insensitive murein endopeptidase compare
SMc04093 -1.3 -9.8 acetyl-CoA synthetase compare
SMc02460 -1.3 -8.0 hypothetical protein compare
SM_b20392 -1.3 -4.1 transcriptional regulator NanR compare
SMc02521 -1.3 -4.1 glycerol-3-phosphate regulon repressor transcription regulator protein compare
SM_b21598 -1.3 -5.5 transcriptional regulator compare
SMc04245 -1.3 -8.5 high-affinity zinc uptake system ABC transporter protein compare
SMc03131 -1.3 -8.2 amino acid-binding periplasmic ABC transporter protein compare
SMc00648 -1.3 -3.8 hypothetical protein compare
SMc02659 -1.3 -3.5 GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) protein compare
SMc04243 -1.2 -5.5 high-affinity zinc uptake system membrane ABC transporter protein compare
SMc04242 -1.2 -1.8 zinc uptake regulation protein compare
SM_b20143 -1.2 -1.8 oligopeptide ABC transporter permease compare
SM_b21035 -1.2 -5.2 hypothetical protein compare
SMc00622 -1.2 -5.8 ribonuclease D protein compare
SMc01939 -1.2 -0.9 urease subunit beta compare
SM_b20773 -1.2 -4.4 GntR family transcriptional regulator compare
SMc04330 -1.2 -2.1 trimethylamine methyltransferase compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source L-Lysine in Sinorhizobium meliloti 1021

For carbon source L-Lysine across organisms