Experiment set1IT025 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A with Sisomicin sulfate salt 0.008 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS23145 +4.5 27.4 hypothetical protein compare
CA265_RS21060 +4.5 15.8 hypothetical protein compare
CA265_RS23525 +4.4 35.3 hypothetical protein compare
CA265_RS16005 +4.2 9.4 hypothetical protein compare
CA265_RS15895 +4.1 17.8 hypothetical protein compare
CA265_RS14415 +3.6 22.0 pseudouridine synthase compare
CA265_RS23505 +3.2 14.5 biopolymer transporter ExbD compare
CA265_RS20320 +3.2 30.5 hypothetical protein compare
CA265_RS22690 +3.2 25.5 hypothetical protein compare
CA265_RS09035 +3.1 22.5 anti-anti-sigma factor compare
CA265_RS23510 +3.1 11.9 energy transducer TonB compare
CA265_RS20315 +3.0 25.7 hypothetical protein compare
CA265_RS12765 +3.0 24.2 SRPBCC family protein compare
CA265_RS04395 +3.0 20.5 heptosyltransferase compare
CA265_RS23620 +2.9 20.3 16S rRNA (uracil(1498)-N(3))-methyltransferase conserved
CA265_RS15200 +2.9 16.7 hypothetical protein compare
CA265_RS22805 +2.9 11.9 glycosyl transferase compare
CA265_RS04400 +2.9 16.0 hypothetical protein compare
CA265_RS22800 +2.7 17.1 glycosyl transferase compare
CA265_RS02990 +2.7 19.3 mannosyltransferase compare
CA265_RS19420 +2.5 4.8 hypothetical protein compare
CA265_RS19940 +2.4 20.8 hypothetical protein compare
CA265_RS15900 +2.4 3.0 hypothetical protein compare
CA265_RS21900 +2.4 20.3 two-component sensor histidine kinase compare
CA265_RS05070 +2.3 14.5 Na+/H+ antiporter NhaA compare
CA265_RS14535 +2.3 6.5 DUF4783 domain-containing protein compare
CA265_RS17145 +2.2 12.5 malate:quinone oxidoreductase compare
CA265_RS13985 +2.0 6.2 hypothetical protein compare
CA265_RS21905 +2.0 9.8 hypothetical protein compare
CA265_RS13195 +2.0 2.8 SAM-dependent methyltransferase compare
CA265_RS10610 +2.0 4.9 hypothetical protein compare
CA265_RS19945 +1.9 7.8 hypothetical protein compare
CA265_RS16155 +1.9 10.6 tRNA pseudouridine(55) synthase TruB compare
CA265_RS13020 +1.9 8.6 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
CA265_RS14580 +1.9 14.6 cytidylate kinase compare
CA265_RS13200 +1.8 11.9 phosphatase PAP2 family protein compare
CA265_RS19605 +1.8 11.1 serine hydrolase compare
CA265_RS20355 +1.8 2.8 hypothetical protein compare
CA265_RS03260 +1.8 13.3 multidrug ABC transporter ATP-binding protein compare
CA265_RS19755 +1.7 7.7 hypothetical protein compare
CA265_RS15195 +1.7 6.4 hypothetical protein compare
CA265_RS14485 +1.7 6.2 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
CA265_RS18770 +1.7 4.6 hypothetical protein compare
CA265_RS24720 +1.7 13.9 multidrug transporter compare
CA265_RS18990 +1.6 15.0 cell surface protein SprA compare
CA265_RS08900 +1.6 9.0 D-arabinose 5-phosphate isomerase compare
CA265_RS23605 +1.6 9.7 alkaline phosphatase compare
CA265_RS02965 +1.6 8.0 hypothetical protein compare
CA265_RS07455 +1.6 2.1 hypothetical protein compare
CA265_RS03290 +1.5 11.3 gliding motility-associated ABC transporter permease subunit GldF compare
CA265_RS25235 +1.5 10.5 hypothetical protein compare
CA265_RS09585 +1.5 7.6 RNA helicase compare
CA265_RS14665 +1.5 11.6 hypothetical protein compare
CA265_RS18115 +1.5 10.0 gliding motility protein GldN compare
CA265_RS17535 +1.5 8.6 deoxyribodipyrimidine photolyase compare
CA265_RS15110 +1.5 3.8 NAD(P)-dependent oxidoreductase compare
CA265_RS21290 +1.5 3.6 hypothetical protein compare
CA265_RS14750 +1.4 8.5 energy transducer TonB compare
CA265_RS18780 +1.4 6.3 YicC family protein compare
CA265_RS14740 +1.4 5.6 biopolymer transporter ExbB compare
CA265_RS21195 +1.4 11.5 hypothetical protein compare
CA265_RS07460 +1.4 6.4 deoxynucleoside kinase compare
CA265_RS14670 +1.4 10.0 hypothetical protein compare
CA265_RS10595 +1.4 8.4 dicarboxylate/amino acid:cation symporter compare
CA265_RS03295 +1.4 11.2 gliding motility-associated ABC transporter substrate-binding protein GldG compare
CA265_RS15085 +1.4 8.8 hypothetical protein compare
CA265_RS13255 +1.4 7.9 leucine dehydrogenase compare
CA265_RS23635 +1.4 11.3 gliding motility lipoprotein GldJ compare
CA265_RS18315 +1.4 8.7 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase compare
CA265_RS23640 +1.3 10.0 hypothetical protein compare
CA265_RS23985 +1.3 8.3 gliding motility lipoprotein GldB compare
CA265_RS12945 +1.3 9.3 hypothetical protein compare
CA265_RS16470 +1.3 9.0 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH conserved
CA265_RS10235 +1.3 2.4 hypothetical protein compare
CA265_RS19740 +1.3 7.8 gliding motility lipoprotein GldD compare
CA265_RS18120 +1.3 10.6 gliding motility protein GldM compare
CA265_RS04650 +1.3 9.0 two-component sensor histidine kinase compare
CA265_RS08910 +1.2 4.7 3-deoxy-8-phosphooctulonate synthase compare
CA265_RS13225 +1.2 8.1 exonuclease compare
CA265_RS04655 +1.2 6.3 DNA-binding response regulator compare
CA265_RS02795 +1.2 2.4 hypothetical protein compare
CA265_RS06395 +1.2 4.2 hypothetical protein compare
CA265_RS14745 +1.2 5.8 biopolymer transporter ExbD compare
CA265_RS21495 +1.2 3.3 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase compare
CA265_RS10530 +1.2 6.1 ribonuclease R compare
CA265_RS22790 +1.2 6.2 hypothetical protein compare
CA265_RS18225 +1.1 7.2 DNA-binding response regulator compare
CA265_RS10750 +1.1 7.1 SMC-Scp complex subunit ScpB compare
CA265_RS18130 +1.1 9.3 gliding motility-associated lipoprotein compare
CA265_RS08665 +1.1 1.9 tRNA-Lys compare
CA265_RS06790 +1.1 6.4 chondroitinase compare
CA265_RS15910 +1.1 8.1 hypothetical protein compare
CA265_RS07450 +1.1 6.2 3-deoxy-D-manno-octulosonate cytidylyltransferase compare
CA265_RS08385 +1.1 4.8 sodium:solute symporter compare
CA265_RS08895 +1.0 6.9 mannose-1-phosphate guanylyltransferase compare
CA265_RS17600 +1.0 6.1 hypothetical protein compare
CA265_RS03180 +1.0 4.1 hypothetical protein compare
CA265_RS15070 +1.0 3.8 hypothetical protein compare
CA265_RS03105 +1.0 2.6 hypothetical protein compare
CA265_RS11030 +1.0 1.7 twin-arginine translocase TatA/TatE family subunit compare
CA265_RS03050 +1.0 2.9 hypothetical protein compare
CA265_RS08860 +1.0 7.2 hypothetical protein compare
CA265_RS14825 +1.0 1.7 outer membrane protein assembly factor BamD compare
CA265_RS06290 +1.0 1.5 hypothetical protein compare
CA265_RS20375 +1.0 5.3 methyltransferase compare
CA265_RS22035 +1.0 3.8 hypothetical protein compare
CA265_RS22395 +1.0 3.6 VOC family virulence protein compare
CA265_RS02605 +1.0 4.8 hypothetical protein compare
CA265_RS15230 +1.0 6.1 RNA pseudouridine synthase compare
CA265_RS18190 +0.9 6.1 cupin compare
CA265_RS00650 +0.9 3.6 hypothetical protein compare
CA265_RS16115 +0.9 5.8 DEAD/DEAH box helicase compare
CA265_RS06610 +0.9 7.5 transmembrane HD family protein compare
CA265_RS21295 +0.9 1.9 hypothetical protein compare
CA265_RS13750 +0.9 5.0 hypothetical protein compare
CA265_RS01875 +0.9 2.9 hypothetical protein compare
CA265_RS20785 +0.9 3.1 hypothetical protein compare
CA265_RS03125 +0.9 1.7 hypothetical protein compare
CA265_RS21485 +0.9 3.5 acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase compare
CA265_RS06885 +0.9 1.1 hypothetical protein compare
CA265_RS16305 +0.9 3.3 stationary phase survival protein SurE compare
CA265_RS21265 +0.9 3.9 hypothetical protein compare
CA265_RS03085 +0.9 4.7 hypothetical protein compare
CA265_RS25415 +0.9 5.4 3-deoxy-D-manno-octulosonic acid transferase compare
CA265_RS21125 +0.8 4.4 tRNA dihydrouridine synthase DusB compare
CA265_RS19665 +0.8 2.1 cysteine methyltransferase compare
CA265_RS12780 +0.8 2.7 hypothetical protein compare
CA265_RS18555 +0.8 2.0 hypothetical protein compare
CA265_RS11120 +0.8 4.5 phosphohydrolase compare
CA265_RS24770 +0.8 2.3 hypothetical protein compare
CA265_RS16225 +0.8 1.9 hypothetical protein compare
CA265_RS21255 +0.8 4.2 hypothetical protein compare
CA265_RS13720 +0.8 1.8 4-oxalocrotonate tautomerase compare
CA265_RS21260 +0.8 4.8 hypothetical protein compare
CA265_RS08110 +0.8 2.3 hypothetical protein compare
CA265_RS16105 +0.8 1.5 hypothetical protein compare
CA265_RS24980 +0.8 2.9 hypothetical protein compare
CA265_RS14765 +0.8 6.2 alkaline phosphatase family protein compare
CA265_RS18400 +0.8 4.7 iron-sulfur cluster-binding protein compare
CA265_RS18435 +0.8 5.6 peptide chain release factor 3 compare
CA265_RS20650 +0.8 0.9 hypothetical protein compare
CA265_RS19425 +0.8 3.7 nematoblast specific protein compare
CA265_RS01055 +0.8 3.6 hypothetical protein compare
CA265_RS03515 +0.8 2.8 Fe-S assembly protein IscX compare
CA265_RS16765 +0.8 4.7 SAM-dependent methyltransferase compare
CA265_RS17515 +0.8 4.1 hypothetical protein compare
CA265_RS11760 +0.8 3.1 mobilization protein compare
CA265_RS09935 +0.8 2.4 hypothetical protein compare
CA265_RS20395 +0.8 2.8 hypothetical protein compare
CA265_RS14480 +0.8 2.6 hypothetical protein compare
CA265_RS21565 +0.8 1.2 cold-shock protein compare
CA265_RS07490 +0.8 3.9 ATP:cob(I)alamin adenosyltransferase compare
CA265_RS13175 +0.8 1.1 hypothetical protein compare
CA265_RS21675 +0.8 4.5 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB compare
CA265_RS04020 +0.8 4.5 hypothetical protein compare
CA265_RS19345 +0.8 4.9 hypothetical protein compare
CA265_RS06520 +0.8 3.5 hypothetical protein compare
CA265_RS10170 +0.7 1.4 hypothetical protein compare
CA265_RS17290 +0.7 1.0 tRNA-Lys compare
CA265_RS10540 +0.7 1.1 dinitrogenase iron-molybdenum cofactor biosynthesis protein compare
CA265_RS09335 +0.7 2.9 DUF4442 domain-containing protein compare
CA265_RS09715 +0.7 2.4 polyphosphate--nucleotide phosphotransferase compare
CA265_RS15105 +0.7 1.0 glutamyl-tRNA amidotransferase compare
CA265_RS20775 +0.7 3.0 hypothetical protein compare
CA265_RS12720 +0.7 4.6 hypothetical protein compare
CA265_RS18275 +0.7 1.8 pyrophosphatase compare
CA265_RS09810 +0.7 4.4 glucose-6-phosphate dehydrogenase compare
CA265_RS06925 +0.7 2.7 hypothetical protein compare
CA265_RS25355 +0.7 3.6 DUF2807 domain-containing protein compare
CA265_RS23355 +0.7 3.5 hypothetical protein compare
CA265_RS16410 +0.7 3.7 hypothetical protein compare
CA265_RS24775 +0.7 3.5 peptidylprolyl isomerase compare
CA265_RS14000 +0.7 1.7 DNA alkylation repair protein compare
CA265_RS09690 +0.7 2.3 hypothetical protein compare
CA265_RS02580 +0.7 3.2 hypothetical protein compare
CA265_RS08890 +0.7 3.0 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
CA265_RS09200 +0.7 3.6 hypothetical protein compare
CA265_RS25000 +0.7 2.3 hypothetical protein compare
CA265_RS12665 +0.7 1.1 cold-shock protein compare
CA265_RS10415 +0.7 4.8 type I methionyl aminopeptidase compare
CA265_RS12675 +0.7 3.0 hypothetical protein compare
CA265_RS08660 +0.7 1.4 glyoxalase compare
CA265_RS16605 +0.7 5.3 1-pyrroline-5-carboxylate dehydrogenase compare
CA265_RS12745 +0.7 3.0 NUDIX hydrolase compare
CA265_RS18330 +0.7 3.7 hypothetical protein compare
CA265_RS18200 +0.7 3.1 DUF4440 domain-containing protein compare
CA265_RS17330 +0.7 2.2 hypothetical protein compare
CA265_RS02565 +0.7 2.5 hypothetical protein compare
CA265_RS24940 +0.7 2.2 hypothetical protein compare
CA265_RS18950 +0.7 3.7 transcriptional regulator compare
CA265_RS17215 +0.7 5.0 endonuclease compare
CA265_RS11485 +0.7 2.0 hypothetical protein compare
CA265_RS24490 +0.7 3.1 glyoxalase/bleomycin resistance/extradiol dioxygenase family protein compare
CA265_RS07135 +0.7 3.1 MarR family transcriptional regulator compare
CA265_RS03110 +0.7 3.4 DUF58 domain-containing protein compare
CA265_RS20975 +0.7 1.5 hypothetical protein compare
CA265_RS14640 +0.7 1.4 UDP-glucose 4-epimerase compare
CA265_RS05570 +0.7 3.2 hypothetical protein compare
CA265_RS13245 +0.7 1.0 hypothetical protein compare
CA265_RS00235 +0.6 2.5 hypothetical protein compare


Specific Phenotypes

For 25 genes in this experiment

For stress Sisomicin sulfate salt in Pedobacter sp. GW460-11-11-14-LB5

For stress Sisomicin sulfate salt across organisms