Experiment set1IT025 for Cupriavidus basilensis FW507-4G11

Compare to:

R2A with D-Cycloserine 0.5 mg/ml

200 most important genes:

  gene name fitness t score description  
RR42_RS05420 -6.1 -3.8 membrane protein compare
RR42_RS17560 -5.6 -5.5 Fur family transcriptional regulator compare
RR42_RS04325 -5.5 -3.3 membrane protein compare
RR42_RS17375 -4.5 -1.4 hypothetical protein compare
RR42_RS07555 -4.4 -2.6 potassium transporter Kup compare
RR42_RS13910 -4.1 -6.5 glutamate racemase compare
RR42_RS03080 -3.7 -2.9 recombinase RecA compare
RR42_RS33815 -3.6 -1.1 isochorismatase compare
RR42_RS04475 -3.4 -10.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS18310 -3.3 -1.7 indole-3-glycerol-phosphate synthase compare
RR42_RS17390 -3.3 -6.2 ATP-dependent DNA helicase RecG compare
RR42_RS26350 -3.3 -3.2 bleomycin resistance protein compare
RR42_RS04700 -3.2 -1.3 ribonuclease G compare
RR42_RS14985 -3.1 -1.6 30S ribosomal protein S21 compare
RR42_RS13905 -3.0 -4.5 fumarate hydratase compare
RR42_RS14365 -3.0 -2.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS08350 -2.9 -2.3 hypothetical protein compare
RR42_RS01385 -2.8 -3.2 5,10-methylenetetrahydrofolate reductase compare
RR42_RS26900 -2.8 -2.3 enoyl-CoA hydratase compare
RR42_RS06485 -2.8 -9.6 chorismate synthase compare
RR42_RS30980 -2.7 -2.0 hypothetical protein compare
RR42_RS19005 -2.7 -4.4 3-dehydroquinate synthase compare
RR42_RS00115 -2.7 -1.8 hypothetical protein compare
RR42_RS14360 -2.7 -1.6 tryptophan synthase subunit alpha compare
RR42_RS05920 -2.6 -5.3 HrcA family transcriptional regulator compare
RR42_RS27065 -2.6 -1.9 hypothetical protein compare
RR42_RS15050 -2.4 -6.6 DNA polymerase I compare
RR42_RS18420 -2.4 -8.4 hypothetical protein compare
RR42_RS01795 -2.4 -7.4 phosphoenolpyruvate-protein phosphotransferase compare
RR42_RS34520 -2.4 -1.0 transposase compare
RR42_RS01485 -2.3 -2.1 phosphonate transporter compare
RR42_RS17565 -2.3 -8.1 LysR family transcriptional regulator compare
RR42_RS15120 -2.3 -1.5 4-oxalocrotonate tautomerase compare
RR42_RS09085 -2.2 -1.2 C4-dicarboxylate ABC transporter permease compare
RR42_RS16240 -2.2 -1.2 cobalamin biosynthesis protein CbiX compare
RR42_RS13515 -2.1 -4.9 membrane protein compare
RR42_RS04145 -2.1 -1.2 peptidase A24 compare
RR42_RS05860 -2.1 -4.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS27120 -2.1 -1.5 amino acid ABC transporter permease compare
RR42_RS05485 -2.1 -2.2 polynucleotide phosphorylase/polyadenylase compare
RR42_RS07325 -2.1 -4.7 exodeoxyribonuclease III compare
RR42_RS22250 -2.1 -1.6 hypothetical protein compare
RR42_RS02705 -2.1 -1.7 Holliday junction DNA helicase RuvA compare
RR42_RS02490 -2.1 -3.0 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare
RR42_RS26220 -2.0 -2.2 citrate lyase subunit beta compare
RR42_RS05670 -2.0 -1.6 urease subunit beta compare
RR42_RS19085 -2.0 -1.4 cytochrome C biogenesis protein ResB compare
RR42_RS15090 -2.0 -4.6 DNA helicase compare
RR42_RS21295 -2.0 -2.1 L-lactate dehydrogenase, LutA subunit (from data) compare
RR42_RS20205 -2.0 -1.9 chromosome partitioning protein compare
RR42_RS31435 -2.0 -1.1 hypothetical protein compare
RR42_RS07590 -2.0 -5.1 pseudouridine synthase compare
RR42_RS36920 -1.9 -2.5 TetR family transcriptional regulator compare
RR42_RS37240 -1.9 -1.2 hypothetical protein compare
RR42_RS18305 -1.9 -2.8 anthranilate phosphoribosyltransferase compare
RR42_RS15200 -1.8 -3.4 phenazine biosynthesis protein PhzC/PhzF compare
RR42_RS09300 -1.8 -1.6 aromatic ring-opening dioxygenase LigB compare
RR42_RS28290 -1.8 -2.6 DNA-binding protein compare
RR42_RS23650 -1.8 -1.5 flagellar protein compare
RR42_RS00830 -1.8 -4.6 cell division protein FtsN compare
RR42_RS18365 -1.8 -4.1 GTP-binding protein compare
RR42_RS09555 -1.8 -2.0 universal stress protein UspA compare
RR42_RS05425 -1.7 -4.4 membrane protein compare
RR42_RS08575 -1.7 -1.0 tail protein compare
RR42_RS31330 -1.7 -0.8 LysR family transcriptional regulator compare
RR42_RS01785 -1.7 -2.0 PTS fructose transporter subunit IIA compare
RR42_RS11770 -1.7 -1.6 cyclase compare
RR42_RS18300 -1.7 -4.2 anthranilate synthase subunit II compare
RR42_RS21790 -1.7 -2.0 short-chain dehydrogenase compare
RR42_RS03095 -1.7 -1.4 succinyl-CoA synthetase subunit beta compare
RR42_RS08085 -1.7 -3.4 hypothetical protein compare
RR42_RS18295 -1.6 -7.1 anthranilate synthase component I compare
RR42_RS24605 -1.6 -6.2 TetR family transcriptional regulator compare
RR42_RS09470 -1.6 -1.7 2-dehydro-3-deoxygluconokinase compare
RR42_RS01775 -1.6 -4.6 glutamate--cysteine ligase compare
RR42_RS30450 -1.6 -2.5 cation:proton antiporter compare
RR42_RS11795 -1.6 -2.4 PEP synthetase regulatory protein compare
RR42_RS02065 -1.5 -1.3 phosphate starvation-inducible protein PsiF compare
RR42_RS31790 -1.5 -1.1 nitrite reductase compare
RR42_RS14125 -1.5 -1.2 metal-binding protein compare
RR42_RS07995 -1.5 -1.1 hypothetical protein compare
RR42_RS25455 -1.5 -1.1 acetyl-CoA acetyltransferase compare
RR42_RS15525 -1.5 -1.0 hypothetical protein compare
RR42_RS03020 -1.5 -1.2 MarR family transcriptional regulator compare
RR42_RS14755 -1.5 -3.4 hypothetical protein compare
RR42_RS29280 -1.5 -1.0 hypothetical protein compare
RR42_RS04770 -1.5 -1.1 methylglyoxal synthase compare
RR42_RS19820 -1.4 -2.2 membrane protein compare
RR42_RS06270 -1.4 -3.5 cupin compare
RR42_RS02270 -1.4 -1.0 hypothetical protein compare
RR42_RS19860 -1.4 -1.0 tartronate semialdehyde reductase compare
RR42_RS00625 -1.4 -1.0 hypothetical protein compare
RR42_RS15035 -1.4 -3.9 ZIP zinc transporter compare
RR42_RS21595 -1.4 -1.5 IclR family transcriptional regulator compare
RR42_RS17865 -1.4 -3.8 N-acetyl-anhydromuranmyl-L-alanine amidase compare
RR42_RS08790 -1.4 -1.2 zinc-binding protein compare
RR42_RS06225 -1.4 -4.7 phosphoesterase compare
RR42_RS04460 -1.4 -5.2 chorismate mutase compare
RR42_RS20965 -1.3 -2.9 transferase compare
RR42_RS02475 -1.3 -3.6 endonuclease compare
RR42_RS23305 -1.3 -1.0 hypothetical protein compare
RR42_RS30580 -1.3 -3.6 membrane protein compare
RR42_RS17320 -1.3 -1.0 murein hydrolase transporter LrgA compare
RR42_RS12345 -1.3 -1.4 hypothetical protein compare
RR42_RS16360 -1.3 -1.5 transposase compare
RR42_RS27090 -1.3 -1.3 chemotaxis protein CheV compare
RR42_RS00295 -1.3 -4.8 DEAD/DEAH box helicase compare
RR42_RS14965 -1.3 -3.1 hypothetical protein compare
RR42_RS14055 -1.3 -1.9 elongation factor 4 compare
RR42_RS14625 -1.3 -2.1 formimidoylglutamase compare
RR42_RS23870 -1.3 -2.2 hypothetical protein compare
RR42_RS18925 -1.3 -3.2 UDP-N-acetylglucosamine 1-carboxyvinyltransferase compare
RR42_RS29865 -1.3 -1.9 hypothetical protein compare
RR42_RS22710 -1.3 -2.0 short-chain dehydrogenase compare
RR42_RS00600 -1.3 -1.1 DeoR family transcriptional regulator compare
RR42_RS08425 -1.2 -1.1 hypothetical protein compare
RR42_RS17180 -1.2 -5.2 hypothetical protein compare
RR42_RS14235 -1.2 -1.0 hypothetical protein compare
RR42_RS37170 -1.2 -2.5 MazF family transcriptional regulator compare
RR42_RS23515 -1.2 -2.8 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
RR42_RS11275 -1.2 -3.2 3-methylitaconate isomerase compare
RR42_RS15865 -1.2 -1.3 uracil phosphoribosyltransferase compare
RR42_RS36350 -1.2 -2.6 D-amino acid oxidase compare
RR42_RS17055 -1.2 -4.2 LuxR family transcriptional regulator compare
RR42_RS07330 -1.2 -4.1 histidine utilization repressor compare
RR42_RS21355 -1.2 -2.0 ABC transporter permease compare
RR42_RS35900 -1.2 -4.6 hypothetical protein compare
RR42_RS11270 -1.2 -4.2 aconitate hydratase compare
RR42_RS00785 -1.2 -2.4 LuxR family transcriptional regulator compare
RR42_RS25600 -1.2 -1.8 AraC family transcriptional regulator compare
RR42_RS08340 -1.2 -1.3 phage tail protein compare
RR42_RS13685 -1.2 -0.9 cupin compare
RR42_RS13025 -1.2 -1.9 hypothetical protein compare
RR42_RS22360 -1.2 -1.1 hypothetical protein compare
RR42_RS18830 -1.2 -3.4 large-conductance mechanosensitive channel compare
RR42_RS13620 -1.2 -0.7 ferredoxin compare
RR42_RS02250 -1.2 -1.2 GntR family transcriptional regulator compare
RR42_RS15145 -1.1 -2.1 membrane protein compare
RR42_RS13465 -1.1 -1.7 phosphate transporter permease subunit PstC compare
RR42_RS03395 -1.1 -1.8 membrane protein compare
RR42_RS09180 -1.1 -0.7 Rrf2 family transcriptional regulator compare
RR42_RS00300 -1.1 -3.2 kinase compare
RR42_RS08165 -1.1 -2.1 hypothetical protein compare
RR42_RS34690 -1.1 -1.5 permease compare
RR42_RS17645 -1.1 -3.0 shikimate dehydrogenase compare
RR42_RS07265 -1.1 -1.7 hypothetical protein compare
RR42_RS07605 -1.1 -3.4 poly-beta-hydroxybutyrate polymerase compare
RR42_RS26430 -1.1 -0.9 ferredoxin reductase compare
RR42_RS23110 -1.1 -0.9 isochorismatase compare
RR42_RS18485 -1.1 -0.7 glutaredoxin compare
RR42_RS32975 -1.1 -1.1 LysR family transcriptional regulator compare
RR42_RS02045 -1.1 -5.2 GTPase compare
RR42_RS21435 -1.1 -2.0 hypothetical protein compare
RR42_RS02470 -1.1 -1.3 dihydroneopterin triphosphate pyrophosphatase compare
RR42_RS16220 -1.1 -0.8 DNA polymerase III subunit chi compare
RR42_RS03525 -1.1 -1.0 type VI secretion system effector compare
RR42_RS28125 -1.1 -1.8 hypothetical protein compare
RR42_RS12055 -1.0 -3.7 acyltransferase compare
RR42_RS15795 -1.0 -3.5 spore coat protein compare
RR42_RS36415 -1.0 -1.1 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
RR42_RS06870 -1.0 -1.5 hypothetical protein compare
RR42_RS26875 -1.0 -1.7 LysR family transcriptional regulator compare
RR42_RS26905 -1.0 -3.3 methylcrotonoyl-CoA carboxylase compare
RR42_RS03515 -1.0 -2.2 hypothetical protein compare
RR42_RS22600 -1.0 -1.6 heavy metal resistance protein CzcE compare
RR42_RS01800 -1.0 -3.3 bacterioferritin compare
RR42_RS04715 -1.0 -3.3 ribosome silencing factor RsfS compare
RR42_RS19655 -1.0 -0.9 tRNA-Ala compare
RR42_RS36400 -1.0 -0.7 hypothetical protein compare
RR42_RS04935 -1.0 -1.8 hypothetical protein compare
RR42_RS11790 -1.0 -3.5 phosphoenolpyruvate synthase compare
RR42_RS27110 -1.0 -2.6 hypothetical protein compare
RR42_RS28920 -1.0 -1.1 hypothetical protein compare
RR42_RS08110 -1.0 -1.3 hypothetical protein compare
RR42_RS05810 -1.0 -1.1 RNA polymerase sigma factor compare
RR42_RS17735 -1.0 -1.3 hypothetical protein compare
RR42_RS37455 -1.0 -1.0 hypothetical protein compare
RR42_RS08465 -1.0 -1.8 hypothetical protein compare
RR42_RS08795 -1.0 -1.8 molybdopterin-guanine dinucleotide biosynthesis protein B compare
RR42_RS10260 -1.0 -1.3 acetyl-CoA acetyltransferase compare
RR42_RS36150 -1.0 -2.0 MarR family transcriptional regulator compare
RR42_RS15355 -1.0 -2.0 alpha/beta hydrolase compare
RR42_RS07800 -1.0 -2.1 IclR family transcriptional regulator compare
RR42_RS26205 -1.0 -1.8 LysR family transcriptional regulator compare
RR42_RS04895 -1.0 -3.9 serine/threonine protein phosphatase compare
RR42_RS23480 -0.9 -1.9 3-keto-5-aminohexanoate cleavage protein compare
RR42_RS13270 -0.9 -3.5 recombination protein RecR compare
RR42_RS08120 -0.9 -2.2 hypothetical protein compare
RR42_RS14980 -0.9 -1.9 glutamyl-tRNA amidotransferase compare
RR42_RS23760 -0.9 -1.1 tRNA-Asn compare
RR42_RS03650 -0.9 -1.8 hypothetical protein compare
RR42_RS34425 -0.9 -2.4 hypothetical protein compare
RR42_RS17720 -0.9 -1.0 sugar kinase compare
RR42_RS24490 -0.9 -0.8 hypothetical protein compare
RR42_RS27940 -0.9 -1.7 LysR family transcriptional regulator compare
RR42_RS01130 -0.9 -2.1 haloacid dehalogenase compare
RR42_RS17060 -0.9 -6.2 histidine kinase compare
RR42_RS23545 -0.9 -2.2 hypothetical protein compare
RR42_RS09590 -0.9 -1.1 hypothetical protein compare
RR42_RS26410 -0.9 -1.8 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For stress D-Cycloserine in Cupriavidus basilensis FW507-4G11

For stress D-Cycloserine across organisms