Experiment set1IT025 for Phocaeicola vulgatus CL09T03C04

Compare to:

D-Mannose 20 mM carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS08840 -7.0 -13.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS12115 -6.9 -13.3 acetylglutamate kinase compare
HMPREF1058_RS15075 -6.8 -9.3 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS15870 -6.8 -8.1 ATP phosphoribosyltransferase compare
HMPREF1058_RS08835 -6.7 -10.2 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS14550 -6.7 -10.2 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS14545 -6.6 -11.1 2-isopropylmalate synthase compare
HMPREF1058_RS14920 -6.6 -11.9 serine dehydratase subunit alpha family protein compare
HMPREF1058_RS14610 -6.6 -15.4 adenylosuccinate synthase compare
HMPREF1058_RS08650 -6.4 -10.7 glutamate 5-kinase compare
HMPREF1058_RS15880 -6.4 -9.8 histidinol-phosphate transaminase compare
HMPREF1058_RS08845 -6.3 -12.2 argininosuccinate synthase compare
HMPREF1058_RS09675 -6.3 -5.6 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS02220 -6.3 -4.4 branched-chain amino acid aminotransferase compare
HMPREF1058_RS11730 -6.3 -3.3 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS17935 -6.3 -8.6 glycosyltransferase compare
HMPREF1058_RS07170 -6.3 -10.5 tryptophan synthase subunit beta compare
HMPREF1058_RS07200 -6.3 -11.3 tryptophan synthase subunit alpha compare
HMPREF1058_RS17940 -6.3 -6.1 alpha-amylase compare
HMPREF1058_RS12780 -6.2 -15.1 M20 family metallo-hydrolase compare
HMPREF1058_RS02115 -6.2 -12.6 NADP-specific glutamate dehydrogenase compare
HMPREF1058_RS06180 -6.2 -6.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1058_RS03910 -6.2 -4.3 alpha amylase C-terminal domain-containing protein compare
HMPREF1058_RS09585 -6.2 -20.5 argininosuccinate lyase compare
HMPREF1058_RS03800 -6.2 -6.0 serine hydroxymethyltransferase compare
HMPREF1058_RS10820 -6.1 -16.8 4-phosphoerythronate dehydrogenase PdxB compare
HMPREF1058_RS08645 -6.1 -15.3 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1058_RS08855 -6.1 -12.9 arginine repressor compare
HMPREF1058_RS14725 -6.1 -14.6 cofactor-independent phosphoglycerate mutase compare
HMPREF1058_RS08850 -6.0 -11.7 N-acetyltransferase compare
HMPREF1058_RS08830 -6.0 -11.9 pyrroline-5-carboxylate reductase compare
HMPREF1058_RS16820 -6.0 -5.8 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS14565 -5.9 -16.3 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS06170 -5.9 -7.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1058_RS08325 -5.9 -7.8 pyridoxine 5'-phosphate synthase compare
HMPREF1058_RS07190 -5.9 -8.6 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS16760 -5.9 -4.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS16815 -5.9 -9.8 dihydroxy-acid dehydratase compare
HMPREF1058_RS07185 -5.9 -10.0 anthranilate phosphoribosyltransferase compare
HMPREF1058_RS08640 -5.8 -3.3 acetylornithine carbamoyltransferase compare
HMPREF1058_RS07175 -5.8 -11.7 anthranilate synthase component I family protein compare
HMPREF1058_RS10080 -5.8 -16.2 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS14790 -5.8 -15.3 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS15885 -5.7 -9.5 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1058_RS15875 -5.7 -11.0 histidinol dehydrogenase compare
HMPREF1058_RS12490 -5.7 -4.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS14730 -5.6 -14.1 threonine synthase compare
HMPREF1058_RS14785 -5.6 -7.7 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS03000 -5.6 -6.7 IMP dehydrogenase compare
HMPREF1058_RS06165 -5.6 -7.6 imidazole glycerol phosphate synthase subunit HisH compare
HMPREF1058_RS14795 -5.6 -8.5 prephenate dehydratase compare
HMPREF1058_RS17885 -5.5 -15.0 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
HMPREF1058_RS10995 -5.5 -8.3 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS07955 -5.5 -11.1 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS14770 -5.4 -10.4 prephenate dehydrogenase compare
HMPREF1058_RS14720 -5.2 -18.0 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1058_RS10075 -5.2 -15.3 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1058_RS04065 -5.2 -2.6 VWA domain-containing protein compare
HMPREF1058_RS16835 -5.2 -8.6 ketol-acid reductoisomerase compare
HMPREF1058_RS14560 -5.2 -13.4 2-isopropylmalate synthase compare
HMPREF1058_RS12105 -5.1 -4.9 shikimate kinase compare
HMPREF1058_RS07670 -5.0 -3.2 HAMP domain-containing histidine kinase compare
HMPREF1058_RS11205 -5.0 -3.0 radical SAM protein compare
HMPREF1058_RS06195 -5.0 -9.5 diaminopimelate decarboxylase compare
HMPREF1058_RS13795 -4.9 -16.0 DUF4954 family protein compare
HMPREF1058_RS17035 -4.9 -10.4 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1058_RS04300 -4.9 -3.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS07195 -4.9 -4.4 phosphoribosylanthranilate isomerase compare
HMPREF1058_RS11270 -4.8 -13.1 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS14590 -4.8 -3.3 AraC family transcriptional regulator compare
HMPREF1058_RS08025 -4.8 -9.6 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS11490 -4.7 -4.6 redox-regulated ATPase YchF compare
HMPREF1058_RS03510 -4.7 -7.8 YebC/PmpR family DNA-binding transcriptional regulator compare
HMPREF1058_RS06225 -4.7 -4.5 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1058_RS04075 -4.6 -3.2 DUF58 domain-containing protein compare
HMPREF1058_RS06600 -4.6 -4.5 DedA family protein compare
HMPREF1058_RS06190 -4.6 -5.5 aspartate kinase compare
HMPREF1058_RS04045 -4.6 -5.4 tetratricopeptide repeat protein compare
HMPREF1058_RS00560 -4.5 -4.4 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS04070 -4.3 -5.1 hypothetical protein compare
HMPREF1058_RS07180 -4.2 -6.8 aminodeoxychorismate/anthranilate synthase component II compare
HMPREF1058_RS15375 -4.2 -2.7 DUF4369 domain-containing protein compare
HMPREF1058_RS02135 -4.1 -17.8 phosphoenolpyruvate synthase compare
HMPREF1058_RS01650 -4.1 -6.9 hypothetical protein compare
HMPREF1058_RS04295 -4.1 -5.6 3-phosphoglycerate dehydrogenase compare
HMPREF1058_RS06160 -4.1 -10.2 formyltetrahydrofolate deformylase compare
HMPREF1058_RS06345 -4.0 -8.3 Fe-S cluster domain-containing protein compare
HMPREF1058_RS06175 -4.0 -5.8 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS14005 -4.0 -2.7 3-dehydroquinate synthase compare
HMPREF1058_RS04050 -4.0 -3.9 protein BatD compare
HMPREF1058_RS11930 -3.9 -4.6 CPBP family intramembrane metalloprotease compare
HMPREF1058_RS02170 -3.8 -11.1 hypothetical protein compare
HMPREF1058_RS04080 -3.8 -6.3 AAA family ATPase compare
HMPREF1058_RS05140 -3.8 -2.6 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS16730 -3.7 -2.6 chorismate synthase compare
HMPREF1058_RS06335 -3.7 -13.3 RnfABCDGE type electron transport complex subunit D compare
HMPREF1058_RS17205 -3.7 -2.6 DUF4199 domain-containing protein compare
HMPREF1058_RS05780 -3.6 -12.8 PD40 domain-containing protein compare
HMPREF1058_RS14555 -3.6 -3.4 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS00590 -3.6 -6.0 hypothetical protein compare
HMPREF1058_RS12110 -3.5 -12.2 biosynthetic arginine decarboxylase compare
HMPREF1058_RS18265 -3.5 -2.4 aspartate 1-decarboxylase compare
HMPREF1058_RS17155 -3.5 -5.2 dCMP deaminase family protein compare
HMPREF1058_RS15665 -3.4 -4.0 MFS transporter compare
HMPREF1058_RS13970 -3.3 -3.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS09240 -3.2 -11.0 type I methionyl aminopeptidase compare
HMPREF1058_RS10920 -3.2 -3.1 viroplasmin family protein compare
HMPREF1058_RS14930 -3.2 -12.8 AraC family transcriptional regulator compare
HMPREF1058_RS16845 -3.2 -2.2 SurA N-terminal domain-containing protein compare
HMPREF1058_RS16620 -3.2 -14.8 GGGtGRT protein compare
HMPREF1058_RS08535 -3.2 -3.7 elongation factor P compare
HMPREF1058_RS06330 -3.2 -8.1 RnfABCDGE type electron transport complex subunit G compare
HMPREF1058_RS16625 -3.1 -8.7 hypothetical protein compare
HMPREF1058_RS10955 -3.1 -8.3 phosphatase PAP2 family protein compare
HMPREF1058_RS17130 -3.1 -2.1 tetratricopeptide repeat protein compare
HMPREF1058_RS01460 -3.1 -2.7 acyl-CoA carboxylase subunit beta compare
HMPREF1058_RS18400 -3.1 -7.1 RidA family protein compare
HMPREF1058_RS03245 -3.0 -2.4 thiamine phosphate synthase compare
HMPREF1058_RS05520 -3.0 -1.2 DUF4357 domain-containing protein compare
HMPREF1058_RS09590 -3.0 -7.5 hypothetical protein compare
HMPREF1058_RS05145 -3.0 -9.3 ATP-binding protein compare
HMPREF1058_RS10495 -2.9 -2.0 rhomboid family intramembrane serine protease compare
HMPREF1058_RS06325 -2.9 -5.2 electron transport complex subunit E compare
HMPREF1058_RS05925 -2.9 -2.5 DUF5024 domain-containing protein compare
HMPREF1058_RS02755 -2.8 -3.4 translocation/assembly module TamB domain-containing protein compare
HMPREF1058_RS14465 -2.8 -1.9 enoyl-ACP reductase compare
HMPREF1058_RS19120 -2.8 -1.9 hypothetical protein compare
HMPREF1058_RS02750 -2.8 -3.3 BamA/TamA family outer membrane protein compare
HMPREF1058_RS18035 -2.8 -9.3 6-phosphogluconolactonase compare
HMPREF1058_RS15395 -2.8 -1.9 dihydroorotase compare
HMPREF1058_RS17975 -2.8 -12.0 ATP-dependent dethiobiotin synthetase BioD compare
HMPREF1058_RS11040 -2.8 -10.0 polysaccharide deacetylase family protein compare
HMPREF1058_RS14835 -2.8 -5.4 single-stranded-DNA-specific exonuclease RecJ compare
HMPREF1058_RS06320 -2.7 -7.0 electron transport complex subunit RsxA compare
HMPREF1058_RS15975 -2.7 -9.0 saccharopine dehydrogenase family protein compare
HMPREF1058_RS07655 -2.7 -1.5 hypothetical protein compare
HMPREF1058_RS09750 -2.7 -6.7 glycosyltransferase compare
HMPREF1058_RS11215 -2.7 -4.2 DUF4294 domain-containing protein compare
HMPREF1058_RS11310 -2.7 -8.7 undecaprenyl-diphosphate phosphatase compare
HMPREF1058_RS08295 -2.7 -7.7 ATP-dependent DNA helicase RecG compare
HMPREF1058_RS03970 -2.7 -1.8 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1058_RS11535 -2.6 -8.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HMPREF1058_RS00700 -2.6 -11.1 DUF4831 family protein compare
HMPREF1058_RS03535 -2.6 -2.5 UvrD-helicase domain-containing protein compare
HMPREF1058_RS06080 -2.6 -7.1 glutamine synthetase III compare
HMPREF1058_RS06340 -2.5 -6.9 electron transport complex subunit RsxC compare
HMPREF1058_RS13735 -2.5 -5.8 hypothetical protein compare
HMPREF1058_RS10720 -2.5 -6.2 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS12795 -2.5 -6.8 CYTH domain-containing protein compare
HMPREF1058_RS06820 -2.5 -9.9 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
HMPREF1058_RS12070 -2.5 -4.9 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS04370 -2.5 -6.1 agmatine deiminase family protein compare
HMPREF1058_RS03285 -2.4 -7.7 thiazole synthase compare
HMPREF1058_RS03075 -2.4 -8.6 DNA helicase RecQ compare
HMPREF1058_RS00525 -2.4 -3.4 DUF4290 domain-containing protein compare
HMPREF1058_RS07440 -2.4 -6.8 aspartate--ammonia ligase compare
HMPREF1058_RS05755 -2.4 -8.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
HMPREF1058_RS17080 -2.4 -3.3 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS16750 -2.4 -1.6 shikimate dehydrogenase compare
HMPREF1058_RS15740 -2.4 -3.8 hypothetical protein compare
HMPREF1058_RS03085 -2.4 -3.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS01705 -2.4 -2.1 Na+/H+ antiporter NhaC family protein compare
HMPREF1058_RS14205 -2.4 -9.5 6-phosphofructokinase compare
HMPREF1058_RS04530 -2.4 -2.0 hypothetical protein compare
HMPREF1058_RS02110 -2.4 -11.7 NADP-dependent malic enzyme compare
HMPREF1058_RS16825 -2.3 -4.8 acetolactate synthase small subunit compare
HMPREF1058_RS01925 -2.3 -4.0 helix-turn-helix domain-containing protein compare
HMPREF1058_RS14505 -2.3 -2.2 mechanosensitive ion channel compare
HMPREF1058_RS16490 -2.3 -10.3 sodium ion-translocating decarboxylase subunit beta compare
HMPREF1058_RS03260 -2.3 -9.0 HesA/MoeB/ThiF family protein compare
HMPREF1058_RS15920 -2.3 -2.9 hypothetical protein compare
HMPREF1058_RS03265 -2.2 -11.4 2-iminoacetate synthase ThiH compare
HMPREF1058_RS13350 -2.2 -6.9 Trk system potassium transporter TrkA compare
HMPREF1058_RS14490 -2.2 -12.7 S9 family peptidase compare
HMPREF1058_RS07625 -2.2 -1.9 hypothetical protein compare
HMPREF1058_RS17955 -2.2 -9.5 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
HMPREF1058_RS14120 -2.2 -7.8 DUF349 domain-containing protein compare
HMPREF1058_RS06060 -2.1 -8.7 YegS/Rv2252/BmrU family lipid kinase compare
HMPREF1058_RS17965 -2.1 -1.4 DUF452 family protein compare
HMPREF1058_RS14220 -2.1 -4.3 energy transducer TonB compare
HMPREF1058_RS07565 -2.1 -9.3 transporter compare
HMPREF1058_RS17920 -2.1 -6.4 formate-dependent phosphoribosylglycinamide formyltransferase compare
HMPREF1058_RS17950 -2.1 -5.9 biotin synthase BioB compare
HMPREF1058_RS12735 -2.1 -6.4 HDIG domain-containing protein compare
HMPREF1058_RS03290 -2.1 -2.7 thiamine phosphate synthase compare
HMPREF1058_RS03280 -2.1 -10.6 phosphomethylpyrimidine synthase ThiC compare
HMPREF1058_RS09735 -2.1 -9.8 hypothetical protein compare
HMPREF1058_RS03530 -2.1 -2.0 PD-(D/E)XK nuclease family protein compare
HMPREF1058_RS06410 -2.0 -3.3 elongation factor 4 compare
HMPREF1058_RS12505 -2.0 -5.4 RNA polymerase factor sigma-54 compare
HMPREF1058_RS07075 -2.0 -5.3 SPOR domain-containing protein compare
HMPREF1058_RS17960 -2.0 -8.2 8-amino-7-oxononanoate synthase compare
HMPREF1058_RS18695 -2.0 -2.9 F0F1 ATP synthase subunit gamma compare
HMPREF1058_RS02215 -2.0 -10.4 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
HMPREF1058_RS12345 -2.0 -12.5 4-alpha-glucanotransferase compare
HMPREF1058_RS05930 -2.0 -7.6 MFS transporter compare
HMPREF1058_RS09730 -1.9 -7.5 LicD family protein compare
HMPREF1058_RS15315 -1.9 -3.0 FimB/Mfa2 family fimbrial subunit compare
HMPREF1058_RS06350 -1.9 -4.1 SoxR reducing system RseC family protein compare
HMPREF1058_RS10940 -1.9 -11.0 U32 family peptidase compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source D-Mannose in Phocaeicola vulgatus CL09T03C04

For carbon source D-Mannose across organisms