Experiment set1IT025 for Burkholderia phytofirmans PsJN

Compare to:

L-Tryptophan carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS17680 -8.1 -5.6 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS16835 -7.9 -5.4 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS17675 -7.4 -2.7 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS33915 -6.9 -9.5 isopropylmalate isomerase compare
BPHYT_RS16270 -6.8 -5.3 phosphoglycerate kinase compare
BPHYT_RS09500 -6.7 -6.4 glucose-6-phosphate isomerase compare
BPHYT_RS14915 -6.7 -11.2 phosphoserine aminotransferase compare
BPHYT_RS06900 -6.6 -4.6 aspartate aminotransferase compare
BPHYT_RS33835 -6.5 -9.5 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS14895 -6.4 -4.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS17890 -6.3 -3.9 shikimate kinase compare
BPHYT_RS08955 -6.3 -4.3 homoserine dehydrogenase compare
BPHYT_RS09515 -6.2 -4.3 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS03150 -6.1 -15.3 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS02590 -6.1 -10.6 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS18320 -6.0 -14.0 orotate phosphoribosyltransferase compare
BPHYT_RS15920 -6.0 -11.5 argininosuccinate synthase compare
BPHYT_RS17855 -6.0 -18.5 glutamate synthase compare
BPHYT_RS12985 -6.0 -4.1 amino acid acetyltransferase compare
BPHYT_RS14845 -6.0 -4.1 cysteine synthase compare
BPHYT_RS17670 -6.0 -7.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS06555 -6.0 -10.1 ketol-acid reductoisomerase compare
BPHYT_RS17685 -5.9 -8.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS33645 -5.9 -5.7 homoserine kinase compare
BPHYT_RS14855 -5.8 -3.5 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS33900 -5.7 -13.7 3-isopropylmalate dehydrogenase compare
BPHYT_RS04955 -5.7 -2.9 methionyl-tRNA synthetase compare
BPHYT_RS17690 -5.7 -11.1 imidazole glycerol phosphate synthase compare
BPHYT_RS16245 -5.6 -7.6 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS14190 -5.6 -10.8 carbamoyl phosphate synthase large subunit compare
BPHYT_RS13705 -5.5 -5.4 chorismate synthase compare
BPHYT_RS16025 -5.5 -7.5 Kynurenine formamidase, bacterial (EC 3.5.1.9) (from data) compare
BPHYT_RS06545 -5.3 -10.6 acetolactate synthase compare
BPHYT_RS02610 -5.3 -6.0 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS08850 -5.3 -3.6 transcriptional regulator compare
BPHYT_RS05225 -5.2 -10.1 phosphoenolpyruvate carboxylase compare
BPHYT_RS12055 -5.2 -15.1 phosphoenolpyruvate synthase compare
BPHYT_RS33840 -5.2 -8.1 amidophosphoribosyltransferase compare
BPHYT_RS03640 -5.1 -3.5 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS06610 -5.1 -2.6 triosephosphate isomerase compare
BPHYT_RS01595 -5.0 -8.8 homoserine O-acetyltransferase compare
BPHYT_RS15915 -5.0 -12.4 ornithine carbamoyltransferase compare
BPHYT_RS08960 -4.8 -3.0 threonine synthase compare
BPHYT_RS06175 -4.8 -7.3 LPS biosynthesis compare
BPHYT_RS16255 -4.8 -4.7 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS04725 -4.7 -10.2 sulfite reductase compare
BPHYT_RS33920 -4.7 -9.5 type II citrate synthase compare
BPHYT_RS16030 -4.6 -8.2 Kynureninase (EC 3.7.1.3) (from data) conserved
BPHYT_RS12530 -4.5 -4.7 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS16675 -4.5 -3.1 dihydroorotase compare
BPHYT_RS16840 -4.5 -3.1 transketolase compare
BPHYT_RS13220 -4.4 -10.5 phosphomethylpyrimidine synthase compare
BPHYT_RS16905 -4.4 -9.0 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS14910 -4.3 -7.8 chorismate mutase compare
BPHYT_RS06400 -4.3 -7.5 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS16020 -4.3 -2.4 AsnC family transcriptional regulator compare
BPHYT_RS06405 -4.3 -6.0 phosphoribosylamine--glycine ligase compare
BPHYT_RS04720 -4.2 -8.8 transcriptional regulator compare
BPHYT_RS35460 -3.8 -7.4 acyl-CoA dehydrogenase conserved
BPHYT_RS17715 -3.8 -6.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS15620 -3.7 -5.0 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS03780 -3.7 -7.5 acyl-CoA dehydrogenase conserved
BPHYT_RS08565 -3.6 -1.7 dihydroorotate dehydrogenase compare
BPHYT_RS17885 -3.6 -4.7 3-dehydroquinate synthase compare
BPHYT_RS17700 -3.5 -4.4 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS01590 -3.4 -9.6 methionine biosynthesis protein MetW compare
BPHYT_RS16340 -3.4 -7.3 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS03725 -3.3 -2.9 serine hydroxymethyltransferase compare
BPHYT_RS17520 -3.1 -6.5 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS18705 -2.9 -2.8 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS16345 -2.9 -5.7 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS03535 -2.9 -7.3 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS04965 -2.8 -8.7 ATP-binding protein compare
BPHYT_RS12815 -2.7 -7.2 IclR family transcriptional regulator compare
BPHYT_RS04740 -2.6 -5.2 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS12845 -2.6 -14.0 ATPase compare
BPHYT_RS10100 -2.5 -6.4 dihydroxy-acid dehydratase compare
BPHYT_RS35465 -2.4 -5.0 enoyl-CoA hydratase conserved
BPHYT_RS04730 -2.4 -3.3 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS14790 -2.3 -4.1 D-amino acid dehydrogenase compare
BPHYT_RS33905 -2.3 -1.2 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS14400 -2.3 -3.8 anti-sigma factor compare
BPHYT_RS04745 -2.3 -3.9 sulfate adenylyltransferase compare
BPHYT_RS15710 -2.2 -3.0 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS03645 -2.2 -2.0 tRNA dimethylallyltransferase compare
BPHYT_RS12285 -2.1 -6.2 isocitrate lyase compare
BPHYT_RS12150 -2.1 -9.7 PII uridylyl-transferase compare
BPHYT_RS35445 -2.0 -6.6 2-aminobenzoate-CoA ligase [EC: 6.2.1.32] (from data) conserved
BPHYT_RS35480 -2.0 -3.0 salicylyl-CoA 5-hydroxylase compare
BPHYT_RS05960 -2.0 -8.2 endoribonuclease L-PSP compare
BPHYT_RS14195 -1.9 -3.0 carbamoyl phosphate synthase small subunit compare
BPHYT_RS14865 -1.9 -3.3 UDP-glucose 6-dehydrogenase compare
BPHYT_RS03570 -1.9 -8.0 heat-inducible transcription repressor HrcA compare
BPHYT_RS08125 -1.9 -8.8 ATPase compare
BPHYT_RS06685 -1.9 -2.0 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS14785 -1.9 -6.7 AsnC family transcriptional regulator conserved
BPHYT_RS23840 -1.9 -5.2 methyltransferase compare
BPHYT_RS35885 -1.9 -6.2 hypothetical protein compare
BPHYT_RS08825 -1.9 -2.0 tartronate semialdehyde reductase compare
BPHYT_RS09385 -1.7 -1.4 FAD-dependent oxidoreductase compare
BPHYT_RS11825 -1.7 -1.8 cytosine deaminase compare
BPHYT_RS27920 -1.7 -1.8 tricarballylate utilization protein B compare
BPHYT_RS05320 -1.6 -1.8 beta-lactamase compare
BPHYT_RS18340 -1.6 -1.7 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS36275 -1.6 -2.4 hypothetical protein compare
BPHYT_RS17920 -1.6 -1.9 protein CyaY compare
BPHYT_RS12465 -1.6 -4.4 inositol monophosphatase compare
BPHYT_RS02905 -1.5 -12.4 RNA polymerase subunit sigma-54 compare
BPHYT_RS15890 -1.5 -1.7 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
BPHYT_RS15615 -1.5 -3.7 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS25870 -1.5 -1.3 type III secretion system ATPase compare
BPHYT_RS08245 -1.5 -7.7 anti-sigma factor compare
BPHYT_RS14820 -1.5 -3.2 methionine ABC transporter ATP-binding protein compare
BPHYT_RS03495 -1.5 -4.4 hypothetical protein compare
BPHYT_RS33990 -1.5 -1.2 ATPase compare
BPHYT_RS02595 -1.4 -1.5 sulfurtransferase compare
BPHYT_RS03625 -1.4 -6.5 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS28470 -1.4 -2.0 hypothetical protein compare
BPHYT_RS05290 -1.4 -1.5 hypothetical protein compare
BPHYT_RS02690 -1.4 -7.1 protoheme IX farnesyltransferase compare
BPHYT_RS13645 -1.4 -10.4 threonine--tRNA ligase compare
BPHYT_RS17050 -1.3 -2.9 hypothetical protein compare
BPHYT_RS17945 -1.3 -2.2 cytochrome C biogenesis protein compare
BPHYT_RS18615 -1.3 -4.1 5-formyltetrahydrofolate cyclo-ligase compare
BPHYT_RS33850 -1.3 -2.1 sporulation protein compare
BPHYT_RS21130 -1.3 -2.3 F420-dependent oxidoreductase compare
BPHYT_RS16975 -1.3 -5.1 shikimate 5-dehydrogenase compare
BPHYT_RS12060 -1.3 -2.1 hypothetical protein compare
BPHYT_RS09150 -1.3 -7.3 acetyl-CoA acetyltransferase compare
BPHYT_RS09765 -1.3 -2.9 G-D-S-L family lipolytic protein compare
BPHYT_RS33580 -1.3 -3.8 geranyltranstransferase compare
BPHYT_RS08950 -1.3 -4.7 aminotransferase compare
BPHYT_RS36220 -1.3 -1.4 hypothetical protein compare
BPHYT_RS14500 -1.3 -2.0 molybdenum cofactor biosynthesis protein MoaA compare
BPHYT_RS16320 -1.2 -2.1 cyclic pyranopterin monophosphate synthase accessory protein compare
BPHYT_RS15600 -1.2 -7.1 ABC transporter ATP-binding protein compare
BPHYT_RS18765 -1.2 -6.6 flagellar biosynthesis protein FliS compare
BPHYT_RS17265 -1.2 -1.7 cell division protein compare
BPHYT_RS15595 -1.2 -7.4 ABC transporter compare
BPHYT_RS12990 -1.2 -3.1 iron transporter compare
BPHYT_RS01885 -1.2 -7.1 branched-chain amino acid ABC transporter substrate-binding protein compare
BPHYT_RS11310 -1.2 -1.6 LysR family transcriptional regulator compare
BPHYT_RS14900 -1.2 -2.4 prephenate dehydrogenase compare
BPHYT_RS26685 -1.2 -1.7 precorrin-8X methylmutase compare
BPHYT_RS27580 -1.2 -1.7 F0F1 ATP synthase subunit alpha compare
BPHYT_RS01660 -1.2 -3.2 hypothetical protein compare
BPHYT_RS18910 -1.2 -1.3 FlgN compare
BPHYT_RS12925 -1.2 -1.1 exodeoxyribonuclease III compare
BPHYT_RS19270 -1.2 -3.3 hypothetical protein compare
BPHYT_RS01455 -1.2 -1.1 peptide deformylase compare
BPHYT_RS17525 -1.1 -2.8 glutaredoxin compare
BPHYT_RS33885 -1.1 -7.2 tRNA pseudouridine synthase A compare
BPHYT_RS29800 -1.1 -2.3 hypothetical protein compare
BPHYT_RS25075 -1.1 -1.3 AraC family transcriptional regulator compare
BPHYT_RS21335 -1.1 -2.0 CDP-alcohol phosphatidyltransferase compare
BPHYT_RS03410 -1.1 -2.6 queuine tRNA-ribosyltransferase compare
BPHYT_RS20790 -1.1 -1.4 TetR family transcriptional regulator compare
BPHYT_RS16180 -1.1 -1.2 TetR family transcriptional regulator compare
BPHYT_RS20220 -1.1 -1.8 antibiotic synthesis protein MbtH compare
BPHYT_RS15605 -1.1 -7.8 ABC transporter permease compare
BPHYT_RS24220 -1.1 -2.4 alpha/beta hydrolase compare
BPHYT_RS24315 -1.0 -1.3 phosphoribosyltransferase compare
BPHYT_RS30590 -1.0 -2.9 transcriptional regulator compare
BPHYT_RS04890 -1.0 -1.4 cobalamin biosynthesis protein CobD compare
BPHYT_RS31910 -1.0 -1.9 hypothetical protein compare
BPHYT_RS09225 -1.0 -2.3 LysR family transcriptional regulator compare
BPHYT_RS15645 -1.0 -5.5 nicotinate-nucleotide pyrophosphorylase compare
BPHYT_RS11750 -1.0 -1.4 spermidine/putrescine ABC transporter ATP-binding protein compare
BPHYT_RS26390 -1.0 -1.0 antibiotic resistance protein compare
BPHYT_RS24580 -1.0 -1.4 hypothetical protein compare
BPHYT_RS18760 -1.0 -2.4 flagellar biosynthesis protein FliT compare
BPHYT_RS28860 -1.0 -1.1 haloacid dehalogenase compare
BPHYT_RS08030 -1.0 -2.6 transposase compare
BPHYT_RS29520 -1.0 -0.9 hypothetical protein compare
BPHYT_RS33535 -1.0 -8.6 RNA polymerase sigma factor RpoD compare
BPHYT_RS01485 -1.0 -1.1 histidine kinase compare
BPHYT_RS03240 -1.0 -3.0 formate dehydrogenase accessory protein FdhD compare
BPHYT_RS10065 -1.0 -1.6 cytochrome C oxidase subunit I compare
BPHYT_RS06530 -1.0 -1.2 membrane protein compare
BPHYT_RS15590 -1.0 -3.2 amino acid ABC transporter ATPase compare
BPHYT_RS07165 -1.0 -1.6 peptide ABC transporter permease compare
BPHYT_RS17380 -1.0 -6.4 ribulose-phosphate 3-epimerase compare
BPHYT_RS33950 -1.0 -5.9 GntR family transcriptional regulator compare
BPHYT_RS07050 -1.0 -1.6 membrane protein compare
BPHYT_RS08965 -1.0 -1.4 molybdenum cofactor biosynthesis protein MoaA compare
BPHYT_RS32470 -0.9 -1.6 membrane protein compare
BPHYT_RS23650 -0.9 -0.8 hypothetical protein compare
BPHYT_RS15865 -0.9 -2.4 exodeoxyribonuclease VII large subunit compare
BPHYT_RS09145 -0.9 -3.9 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS34780 -0.9 -2.6 phytoene synthase compare
BPHYT_RS12510 -0.9 -2.3 RNA-binding protein compare
BPHYT_RS26215 -0.9 -2.2 haloacid dehalogenase compare
BPHYT_RS17095 -0.9 -2.0 proline--tRNA ligase compare
BPHYT_RS24820 -0.9 -3.4 cobyrinic acid a,c-diamide synthase compare
BPHYT_RS02660 -0.9 -1.1 membrane protein compare
BPHYT_RS26750 -0.9 -1.9 aldolase compare
BPHYT_RS02865 -0.9 -2.1 hypothetical protein compare
BPHYT_RS02665 -0.9 -5.8 MFS transporter compare
BPHYT_RS21460 -0.9 -1.8 UDP-N-acetylglucosamine 2-epimerase compare
BPHYT_RS21595 -0.9 -1.5 TetR family transcriptional regulator compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source L-Tryptophan in Burkholderia phytofirmans PsJN

For carbon source L-Tryptophan across organisms