Experiment set1IT025 for Burkholderia phytofirmans PsJN

Compare to:

L-Tryptophan carbon source

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS10040 +1.1 1.5 hypothetical protein compare
BPHYT_RS29920 +1.1 1.4 hypothetical protein compare
BPHYT_RS02765 +1.0 3.8 cytochrome BD oxidase subunit I compare
BPHYT_RS34640 +1.0 1.9 TetR family transcriptional regulator compare
BPHYT_RS03655 +0.9 1.4 membrane protein compare
BPHYT_RS01625 +0.9 4.6 chemotaxis protein CheY compare
BPHYT_RS33805 +0.9 1.4 hypothetical protein compare
BPHYT_RS21215 +0.9 4.7 Crp/Fnr family transcriptional regulator compare
BPHYT_RS05610 +0.9 5.2 DNA-cytosine methyltransferase compare
BPHYT_RS14670 +0.9 1.6 hypothetical protein compare
BPHYT_RS18825 +0.9 2.6 flagellar biosynthesis protein FliP compare
BPHYT_RS07705 +0.9 2.6 arginine succinyltransferase compare
BPHYT_RS22815 +0.9 1.9 TonB-denpendent receptor compare
BPHYT_RS31345 +0.9 2.3 malonate transporter compare
BPHYT_RS16815 +0.8 2.1 ureidoglycolate hydrolase compare
BPHYT_RS16175 +0.8 2.3 hemolysin D compare
BPHYT_RS25815 +0.8 1.9 deoxyribose-phosphate aldolase compare
BPHYT_RS30610 +0.8 1.7 major facilitator transporter compare
BPHYT_RS06335 +0.8 1.6 CopG family transcriptional regulator compare
BPHYT_RS12535 +0.8 1.2 membrane protein compare
BPHYT_RS21075 +0.8 2.2 (2Fe-2S)-binding protein compare
BPHYT_RS36470 +0.8 2.1 hypothetical protein compare
BPHYT_RS27030 +0.8 1.7 transcriptional regulator compare
BPHYT_RS24285 +0.8 1.8 TetR family transcriptional regulator compare
BPHYT_RS25470 +0.8 1.7 alkylhydroperoxidase compare
BPHYT_RS24495 +0.8 2.1 transcriptional regulator compare
BPHYT_RS09355 +0.8 2.1 LysR family transcriptional regulator compare
BPHYT_RS00920 +0.8 1.9 transposase compare
BPHYT_RS18890 +0.7 5.1 flagellar basal body rod protein FlgC compare
BPHYT_RS18945 +0.7 4.2 flagellar biosynthesis protein FlhB compare
BPHYT_RS06105 +0.7 1.5 hypothetical protein compare
BPHYT_RS04455 +0.7 1.4 glycosyl transferase compare
BPHYT_RS09885 +0.7 1.9 isomerase compare
BPHYT_RS30085 +0.7 1.0 hypothetical protein compare
BPHYT_RS14255 +0.7 5.6 ABC transporter compare
BPHYT_RS34665 +0.7 2.2 hypothetical protein compare
BPHYT_RS30685 +0.7 1.7 ubiquinol oxidase subunit II, cyanide insensitive compare
BPHYT_RS07190 +0.7 3.0 acetyltransferase compare
BPHYT_RS02760 +0.7 2.6 cytochrome BD oxidase subunit II compare
BPHYT_RS09310 +0.7 3.6 sensor histidine kinase compare
BPHYT_RS29485 +0.7 1.2 phosphonate ABC transporter ATP-binding protein compare
BPHYT_RS36185 +0.7 1.9 hypothetical protein compare
BPHYT_RS10750 +0.7 1.2 LysR family transcriptional regulator compare
BPHYT_RS13265 +0.7 2.2 hypothetical protein compare
BPHYT_RS20630 +0.7 1.3 patatin compare
BPHYT_RS20515 +0.7 1.9 alpha/beta hydrolase compare
BPHYT_RS30825 +0.7 1.0 extradiol dioxygenase compare
BPHYT_RS01790 +0.7 5.2 LuxR family transcriptional regulator compare
BPHYT_RS26975 +0.7 1.3 L-lactate dehydrogenase, LldE subunit (from data) compare
BPHYT_RS19355 +0.7 5.8 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase compare
BPHYT_RS02770 +0.7 4.0 membrane protein compare
BPHYT_RS11810 +0.7 1.3 LysR family transcriptional regulator compare
BPHYT_RS12280 +0.7 1.2 RNA helicase compare
BPHYT_RS03090 +0.7 1.2 hypothetical protein compare
BPHYT_RS26570 +0.7 1.1 5'-nucleotidase compare
BPHYT_RS15135 +0.7 1.7 3-ketoacyl-ACP reductase compare
BPHYT_RS20120 +0.7 2.7 porin compare
BPHYT_RS01795 +0.7 4.2 histidine kinase compare
BPHYT_RS28440 +0.7 1.9 heat shock Hsp20 compare
BPHYT_RS18830 +0.7 4.8 flagellar biosynthesis protein FliQ compare
BPHYT_RS30880 +0.6 1.3 peptidase S13 compare
BPHYT_RS09480 +0.6 0.8 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS21470 +0.6 2.1 6-hydroxynicotinate reductase compare
BPHYT_RS27445 +0.6 1.4 hypothetical protein compare
BPHYT_RS11960 +0.6 1.2 MarR family transcriptional regulator compare
BPHYT_RS13935 +0.6 1.8 mannosyltransferase compare
BPHYT_RS22530 +0.6 1.4 N5,N10-methylene tetrahydromethanopterin reductase compare
BPHYT_RS02245 +0.6 1.7 MerR family transcriptional regulator compare
BPHYT_RS18810 +0.6 3.1 flagellar motor switch protein FliM compare
BPHYT_RS14005 +0.6 2.5 ABC transporter compare
BPHYT_RS22540 +0.6 0.9 metal ABC transporter permease compare
BPHYT_RS36480 +0.6 2.1 hypothetical protein compare
BPHYT_RS20185 +0.6 1.5 sugar transferase compare
BPHYT_RS03900 +0.6 0.9 phospholipid-binding protein compare
BPHYT_RS26815 +0.6 2.1 1-aminocyclopropane-1-carboxylate deaminase compare
BPHYT_RS18895 +0.6 4.3 flagellar basal body rod protein FlgB compare
BPHYT_RS30485 +0.6 0.8 ABC transporter ATP-binding protein compare
BPHYT_RS30010 +0.6 1.5 cell division protein compare
BPHYT_RS16195 +0.6 2.6 carbon monoxide dehydrogenase subunit G compare
BPHYT_RS14250 +0.6 4.4 glycosyl transferase compare
BPHYT_RS31630 +0.6 2.3 hypothetical protein compare
BPHYT_RS31050 +0.6 1.1 epimerase compare
BPHYT_RS18775 +0.6 5.1 flagellar M-ring protein FliF compare
BPHYT_RS00690 +0.6 0.9 transcriptional regulator compare
BPHYT_RS27370 +0.6 1.6 CoA transferase compare
BPHYT_RS27410 +0.6 1.3 amidohydrolase compare
BPHYT_RS18790 +0.6 3.5 ATP synthase compare
BPHYT_RS20690 +0.6 1.1 ABC transporter permease compare
BPHYT_RS23030 +0.6 1.0 gluconate 2-dehydrogenase compare
BPHYT_RS27295 +0.6 1.2 hypothetical protein compare
BPHYT_RS22870 +0.6 1.2 copper transporter compare
BPHYT_RS11680 +0.6 1.3 protein-L-isoaspartate O-methyltransferase compare
BPHYT_RS26465 +0.6 0.9 metallophosphoesterase compare
BPHYT_RS18805 +0.6 4.1 flagellar basal body protein FliL compare
BPHYT_RS30210 +0.6 1.8 GCN5 family acetyltransferase compare
BPHYT_RS16960 +0.6 2.1 hypothetical protein compare
BPHYT_RS23480 +0.6 2.3 hypothetical protein compare
BPHYT_RS11075 +0.6 1.4 membrane protein compare
BPHYT_RS21025 +0.6 0.9 cation-binding protein compare
BPHYT_RS14880 +0.6 1.5 integration host factor subunit beta compare
BPHYT_RS18865 +0.6 3.1 flagellar L-ring protein FlgH compare
BPHYT_RS30450 +0.6 0.9 ABC transporter permease compare
BPHYT_RS20880 +0.6 0.8 polyketide cyclase compare
BPHYT_RS18860 +0.6 2.1 flagellar P-ring protein FlgI compare
BPHYT_RS11480 +0.6 2.3 heme ABC transporter ATP-binding protein compare
BPHYT_RS01620 +0.6 3.6 sensor histidine kinase compare
BPHYT_RS15515 +0.6 1.4 D-aminopeptidase compare
BPHYT_RS27560 +0.6 1.2 histidine kinase compare
BPHYT_RS00270 +0.6 1.9 branched-chain amino acid ABC transporter compare
BPHYT_RS18875 +0.6 3.0 flagellar basal body rod protein FlgF compare
BPHYT_RS18780 +0.6 3.8 flagellar motor switch protein FliG compare
BPHYT_RS09565 +0.6 1.2 acetyl-CoA acetyltransferase compare
BPHYT_RS18880 +0.6 4.2 flagellar hook protein FlgE compare
BPHYT_RS18940 +0.6 3.6 flagellar biosynthesis protein FlhA compare
BPHYT_RS04910 +0.5 1.1 phenylacetic acid degradation protein compare
BPHYT_RS28965 +0.5 1.4 hypothetical protein compare
BPHYT_RS05395 +0.5 0.9 hypothetical protein compare
BPHYT_RS16880 +0.5 1.3 malic enzyme compare
BPHYT_RS18785 +0.5 1.3 flagellar assembly protein FliH compare
BPHYT_RS02720 +0.5 3.0 MarR family transcriptional regulator compare
BPHYT_RS19985 +0.5 0.8 CoA-transferase compare
BPHYT_RS27800 +0.5 1.2 esterase compare
BPHYT_RS29310 +0.5 1.6 oxidoreductase compare
BPHYT_RS08135 +0.5 0.9 hypothetical protein compare
BPHYT_RS18635 +0.5 1.5 LamB/YcsF family protein compare
BPHYT_RS18935 +0.5 3.3 flagellar biosynthesis regulator FlhF compare
BPHYT_RS26200 +0.5 1.4 acetate kinase compare
BPHYT_RS08645 +0.5 1.4 sulfonate ABC transporter compare
BPHYT_RS08685 +0.5 1.3 hypothetical protein compare
BPHYT_RS25630 +0.5 1.8 glutathione S-transferase compare
BPHYT_RS02755 +0.5 1.3 cyd operon protein YbgT compare
BPHYT_RS07675 +0.5 1.8 ABC transporter for L-Arginine, permease component 2 (from data) compare
BPHYT_RS05095 +0.5 2.7 hydroxymethylpyrimidine transporter compare
BPHYT_RS18835 +0.5 1.0 flagellar biosynthesis protein FliR compare
BPHYT_RS28255 +0.5 1.1 hypothetical protein compare
BPHYT_RS02480 +0.5 1.5 alkaline phosphatase compare
BPHYT_RS32870 +0.5 1.6 hypothetical protein compare
BPHYT_RS12440 +0.5 1.7 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS21505 +0.5 1.1 amidohydrolase compare
BPHYT_RS18925 +0.5 3.7 RNA polymerase sigma70 compare
BPHYT_RS21050 +0.5 2.0 aldehyde-activating protein compare
BPHYT_RS12550 +0.5 0.8 GTP-binding protein HflX compare
BPHYT_RS30830 +0.5 1.6 MFS transporter compare
BPHYT_RS34900 +0.5 1.3 hypothetical protein compare
BPHYT_RS04170 +0.5 1.7 hypothetical protein compare
BPHYT_RS34155 +0.5 1.1 3-hydroxybutyryl-CoA dehydrogenase compare
BPHYT_RS09600 +0.5 1.9 hypothetical protein compare
BPHYT_RS02975 +0.5 1.1 membrane protein compare
BPHYT_RS32825 +0.5 2.0 Xylose isomerase (EC 5.3.1.5) (from data) compare
BPHYT_RS16335 +0.5 0.7 membrane protein compare
BPHYT_RS00375 +0.5 2.5 sugar ABC transporter compare
BPHYT_RS29330 +0.5 1.4 acetyltransferase compare
BPHYT_RS23250 +0.5 1.1 hypothetical protein compare
BPHYT_RS27175 +0.5 0.7 DNA-binding protein compare
BPHYT_RS28620 +0.5 1.3 enoyl-CoA hydratase compare
BPHYT_RS18855 +0.5 2.3 flagellar rod assembly protein FlgJ compare
BPHYT_RS33175 +0.5 0.9 hypothetical protein compare
BPHYT_RS31840 +0.5 1.1 anhydrase compare
BPHYT_RS19925 +0.5 1.4 peptidase C39 compare
BPHYT_RS25395 +0.5 1.3 3-oxoacyl-ACP reductase compare
BPHYT_RS25005 +0.5 0.8 FMN reductase compare
BPHYT_RS08380 +0.5 1.7 multidrug MFS transporter compare
BPHYT_RS13130 +0.5 1.1 metallophosphatase compare
BPHYT_RS21160 +0.5 1.3 NAD(P) transhydrogenase subunit beta compare
BPHYT_RS09725 +0.5 1.3 exopolysaccharide biosynthesis protein compare
BPHYT_RS36495 +0.5 1.8 peptidase compare
BPHYT_RS07215 +0.5 1.5 LysR family transcriptional regulator compare
BPHYT_RS00170 +0.5 2.9 lysine transporter LysE compare
BPHYT_RS18900 +0.5 3.9 flagella basal body P-ring formation protein FlgA compare
BPHYT_RS07095 +0.5 1.3 LysR family transcriptional regulator compare
BPHYT_RS21990 +0.5 1.6 FAD-dependent oxidoreductase compare
BPHYT_RS28875 +0.5 1.7 5-oxo-1,2,5-tricarboxylic-3-penten acid decarboxylase compare
BPHYT_RS05915 +0.5 2.2 rubredoxin compare
BPHYT_RS31740 +0.5 1.9 ABC transporter permease compare
BPHYT_RS35035 +0.5 1.9 membrane protein compare
BPHYT_RS21925 +0.5 1.8 formimidoylglutamase compare
BPHYT_RS02965 +0.5 1.8 membrane protein compare
BPHYT_RS18795 +0.5 2.6 flagellar export protein FliJ compare
BPHYT_RS34330 +0.5 2.7 hypothetical protein compare
BPHYT_RS25800 +0.5 1.0 sugar ABC transporter permease compare
BPHYT_RS22865 +0.5 1.5 ATPase compare
BPHYT_RS20165 +0.5 1.7 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BPHYT_RS29815 +0.5 1.0 UDP-N-acetyl-D-mannosamine transferase compare
BPHYT_RS24565 +0.5 1.7 membrane protein compare
BPHYT_RS34565 +0.5 0.9 chemotaxis protein compare
BPHYT_RS17825 +0.5 0.8 transcriptional regulator compare
BPHYT_RS12640 +0.5 2.6 phosphoesterase compare
BPHYT_RS21870 +0.5 1.4 hypothetical protein compare
BPHYT_RS27830 +0.5 1.2 universal stress protein A compare
BPHYT_RS32360 +0.5 1.0 spermidine/putrescine ABC transporter ATPase compare
BPHYT_RS18800 +0.5 2.3 flagellar hook-length control protein compare
BPHYT_RS01010 +0.5 1.5 hypothetical protein compare
BPHYT_RS00980 +0.5 0.6 GCN5 family acetyltransferase compare
BPHYT_RS07465 +0.5 1.2 FAD-dependent pyridine nucleotide-disulfide oxidoreductase compare
BPHYT_RS10140 +0.5 1.8 ABC transporter substrate-binding protein compare
BPHYT_RS13340 +0.5 1.6 benzoyl-CoA oxygenase compare
BPHYT_RS35180 +0.5 2.1 high potential iron-sulfur protein compare
BPHYT_RS05530 +0.4 1.2 hypothetical protein compare
BPHYT_RS06510 +0.4 0.8 DeoR faimly transcriptional regulator compare
BPHYT_RS36585 +0.4 1.1 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source L-Tryptophan in Burkholderia phytofirmans PsJN

For carbon source L-Tryptophan across organisms