Experiment set1IT024 for Rhodanobacter denitrificans FW104-10B01

Compare to:

R2A control

200 most important genes:

  gene name fitness t score description  
LRK54_RS02895 -4.2 -8.2 rhomboid family intramembrane serine protease compare
LRK54_RS06785 -4.1 -2.8 protein-disulfide reductase DsbD compare
LRK54_RS04350 -4.1 -6.2 phosphatidylcholine/phosphatidylserine synthase compare
LRK54_RS02090 -3.9 -20.6 NAD-glutamate dehydrogenase compare
LRK54_RS06470 -3.9 -14.4 carboxy terminal-processing peptidase compare
LRK54_RS00690 -3.8 -16.2 2-methylcitrate synthase compare
LRK54_RS06885 -3.8 -10.3 rhodanese-like domain-containing protein compare
LRK54_RS00440 -3.7 -8.3 high frequency lysogenization protein HflD compare
LRK54_RS00615 -3.7 -8.3 protease modulator HflC compare
LRK54_RS14825 -3.7 -7.4 protease HtpX compare
LRK54_RS17505 -3.6 -5.0 preprotein translocase subunit SecG compare
LRK54_RS04585 -3.6 -5.5 muramoyltetrapeptide carboxypeptidase compare
LRK54_RS12860 -3.6 -4.9 RNase adapter RapZ compare
LRK54_RS02445 -3.6 -4.7 membrane protein insertion efficiency factor YidD compare
LRK54_RS06685 -3.5 -16.6 TolC family outer membrane protein compare
LRK54_RS16660 -3.5 -12.7 VTT domain-containing protein compare
LRK54_RS11170 -3.5 -4.8 NADP-dependent malic enzyme compare
LRK54_RS14590 -3.5 -9.5 N-acetylmuramoyl-L-alanine amidase compare
LRK54_RS05655 -3.4 -2.4 ABC transporter permease compare
LRK54_RS03710 -3.4 -10.5 tetratricopeptide repeat protein compare
LRK54_RS12670 -3.4 -13.3 glycosyltransferase compare
LRK54_RS14695 -3.4 -17.0 rhomboid family intramembrane serine protease compare
LRK54_RS06755 -3.3 -24.4 LTA synthase family protein compare
LRK54_RS12595 -3.3 -6.7 (2Fe-2S)-binding protein compare
LRK54_RS04630 -3.3 -3.2 energy-dependent translational throttle protein EttA compare
LRK54_RS05550 -3.3 -4.5 FAD-binding protein compare
LRK54_RS00620 -3.2 -12.2 FtsH protease activity modulator HflK compare
LRK54_RS12295 -3.2 -5.3 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
LRK54_RS04720 -3.2 -11.2 phosphoribosylformylglycinamidine synthase compare
LRK54_RS11290 -3.2 -3.1 dihydrolipoyllysine-residue acetyltransferase compare
LRK54_RS05650 -3.1 -5.6 ABC transporter ATP-binding protein compare
LRK54_RS00675 -3.1 -13.8 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK54_RS03125 -3.1 -3.0 preprotein translocase subunit YajC compare
LRK54_RS00085 -3.1 -2.1 tetratricopeptide repeat protein compare
LRK54_RS03290 -3.1 -2.1 RIP metalloprotease RseP compare
LRK54_RS00695 -3.1 -6.8 methylisocitrate lyase compare
LRK54_RS16940 -3.1 -6.8 RNA polymerase sigma factor RpoE compare
LRK54_RS02440 -3.1 -4.6 RNA polymerase-binding protein DksA compare
LRK54_RS05415 -3.0 -10.4 TetR/AcrR family transcriptional regulator compare
LRK54_RS12460 -3.0 -3.0 hypothetical protein compare
LRK54_RS04025 -3.0 -1.6 diacylglycerol kinase compare
LRK54_RS11975 -2.9 -8.6 SLC13 family permease compare
LRK54_RS05495 -2.9 -7.5 met regulon transcriptional regulator MetJ compare
LRK54_RS08585 -2.9 -23.9 RimK family alpha-L-glutamate ligase compare
LRK54_RS13760 -2.8 -10.9 trypsin-like peptidase domain-containing protein compare
LRK54_RS12945 -2.8 -11.4 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK54_RS17270 -2.8 -4.2 DNA translocase FtsK compare
LRK54_RS16615 -2.8 -3.3 phosphopyruvate hydratase compare
LRK54_RS12865 -2.8 -11.8 HPr(Ser) kinase/phosphatase compare
LRK54_RS12590 -2.8 -17.3 molybdopterin-dependent oxidoreductase compare
LRK54_RS00670 -2.7 -4.9 OmpA family protein compare
LRK54_RS11175 -2.7 -12.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK54_RS16755 -2.7 -4.1 SurA N-terminal domain-containing protein compare
LRK54_RS05530 -2.7 -10.4 electron transfer flavoprotein-ubiquinone oxidoreductase compare
LRK54_RS18050 -2.7 -15.7 lipopolysaccharide assembly protein LapB compare
LRK54_RS03110 -2.7 -12.8 nucleotidyltransferase family protein compare
LRK54_RS16730 -2.6 -5.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
LRK54_RS02325 -2.6 -4.4 SDR family oxidoreductase compare
LRK54_RS12190 -2.6 -9.7 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
LRK54_RS02275 -2.4 -6.1 enoyl-CoA hydratase-related protein compare
LRK54_RS00680 -2.4 -10.2 TerC family protein compare
LRK54_RS05985 -2.4 -1.6 response regulator transcription factor compare
LRK54_RS11375 -2.3 -9.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK54_RS05785 -2.3 -9.0 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK54_RS02855 -2.3 -7.8 type I restriction-modification system subunit M compare
LRK54_RS06675 -2.3 -11.3 TetR/AcrR family transcriptional regulator compare
LRK54_RS02070 -2.3 -7.5 acyl-CoA dehydrogenase family protein compare
LRK54_RS15035 -2.3 -8.3 M48 family metalloprotease compare
LRK54_RS10855 -2.2 -5.3 protein-export chaperone SecB compare
LRK54_RS02535 -2.1 -7.6 50S ribosomal protein L9 compare
LRK54_RS17205 -2.1 -7.2 heavy metal translocating P-type ATPase compare
LRK54_RS05980 -2.1 -2.0 ATP-binding protein compare
LRK54_RS12855 -2.1 -6.6 PTS fructose transporter subunit IIA compare
LRK54_RS10950 -2.0 -13.0 S41 family peptidase compare
LRK54_RS15165 -2.0 -5.4 enoyl-CoA hydratase-related protein compare
LRK54_RS15265 -2.0 -11.4 acetyl-CoA C-acyltransferase compare
LRK54_RS16110 -2.0 -10.5 polyhydroxyalkanoate synthesis repressor PhaR compare
LRK54_RS12305 -1.9 -11.6 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
LRK54_RS10150 -1.9 -2.5 DNA topoisomerase I compare
LRK54_RS11385 -1.8 -3.9 co-chaperone DjlA compare
LRK54_RS17225 -1.8 -4.8 cytochrome-c oxidase, cbb3-type subunit II compare
LRK54_RS05740 -1.8 -7.2 phosphoglycerate kinase compare
LRK54_RS03895 -1.8 -12.4 lipopolysaccharide biosynthesis protein compare
LRK54_RS13830 -1.8 -9.1 SDR family NAD(P)-dependent oxidoreductase compare
LRK54_RS09805 -1.8 -7.2 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK54_RS04710 -1.8 -4.5 glycosyltransferase family 2 protein compare
LRK54_RS07215 -1.8 -7.6 cytochrome c4 compare
LRK54_RS16665 -1.7 -10.5 peptidoglycan DD-metalloendopeptidase family protein compare
LRK54_RS10185 -1.7 -13.5 RDD family protein compare
LRK54_RS10355 -1.7 -3.4 threonine synthase compare
LRK54_RS02185 -1.7 -4.0 exodeoxyribonuclease V subunit alpha compare
LRK54_RS02335 -1.7 -7.2 FUSC family protein compare
LRK54_RS12580 -1.6 -3.2 hypothetical protein compare
LRK54_RS17215 -1.6 -4.6 cytochrome-c oxidase, cbb3-type subunit III compare
LRK54_RS02460 -1.6 -8.9 phosphoglycolate phosphatase compare
LRK54_RS07980 -1.6 -3.0 nitrogen regulation protein NR(I) compare
LRK54_RS05665 -1.6 -5.3 dTDP-glucose 4,6-dehydratase compare
LRK54_RS01285 -1.6 -6.2 3-deoxy-D-manno-octulosonic acid kinase compare
LRK54_RS03405 -1.5 -8.8 ribonuclease G compare
LRK54_RS11775 -1.5 -11.6 ABC transporter substrate-binding protein compare
LRK54_RS05200 -1.5 -2.4 hypothetical protein compare
LRK54_RS16875 -1.5 -12.0 kinase/pyrophosphorylase compare
LRK54_RS04450 -1.5 -6.1 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS05615 -1.5 -10.8 hypothetical protein compare
LRK54_RS00405 -1.5 -5.9 FHA domain-containing protein compare
LRK54_RS06610 -1.5 -11.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
LRK54_RS05610 -1.5 -8.0 GtrA family protein compare
LRK54_RS15935 -1.5 -8.1 rRNA pseudouridine synthase compare
LRK54_RS16865 -1.5 -7.7 protein phosphatase 2C domain-containing protein compare
LRK54_RS14670 -1.4 -2.7 NrsF family protein compare
LRK54_RS12300 -1.4 -4.0 Co2+/Mg2+ efflux protein ApaG compare
LRK54_RS07775 -1.4 -4.2 MarR family transcriptional regulator compare
LRK54_RS00080 -1.4 -7.2 helix-turn-helix domain-containing protein compare
LRK54_RS05540 -1.4 -4.6 glycosyltransferase family 2 protein compare
LRK54_RS00815 -1.4 -5.3 pseudouridine synthase compare
LRK54_RS08750 -1.4 -5.1 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
LRK54_RS02870 -1.4 -5.3 DUF502 domain-containing protein compare
LRK54_RS18055 -1.3 -4.9 glycosyltransferase family 4 protein compare
LRK54_RS00345 -1.3 -3.6 TraB/GumN family protein compare
LRK54_RS01410 -1.3 -10.5 ABC transporter ATP-binding protein/permease compare
LRK54_RS16600 -1.3 -8.6 aminopeptidase P family protein compare
LRK54_RS16930 -1.3 -8.2 hypothetical protein compare
LRK54_RS11785 -1.3 -10.7 VacJ family lipoprotein compare
LRK54_RS09345 -1.3 -2.6 ATP-binding protein compare
LRK54_RS11760 -1.3 -8.7 ATP-binding cassette domain-containing protein compare
LRK54_RS08520 -1.3 -10.5 ATP-dependent protease ATPase subunit HslU compare
LRK54_RS02175 -1.3 -7.3 exodeoxyribonuclease V subunit gamma compare
LRK54_RS09000 -1.3 -8.1 HAMP domain-containing histidine kinase compare
LRK54_RS01280 -1.3 -2.4 MBL fold metallo-hydrolase compare
LRK54_RS15020 -1.3 -10.0 polyphosphate kinase 1 compare
LRK54_RS06820 -1.2 -2.6 Fis family transcriptional regulator compare
LRK54_RS04625 -1.2 -8.4 serine hydroxymethyltransferase compare
LRK54_RS02050 -1.2 -9.1 thiamine pyrophosphate-dependent enzyme compare
LRK54_RS01395 -1.2 -2.1 arsenate reductase ArsC compare
LRK54_RS02180 -1.2 -6.1 UvrD-helicase domain-containing protein compare
LRK54_RS18060 -1.2 -5.0 polysaccharide biosynthesis protein compare
LRK54_RS02285 -1.2 -8.4 hydroxymethylglutaryl-CoA lyase compare
LRK54_RS11770 -1.2 -9.4 outer membrane lipid asymmetry maintenance protein MlaD compare
LRK54_RS06495 -1.2 -8.1 septal ring lytic transglycosylase RlpA family protein compare
LRK54_RS03925 -1.2 -8.5 glycosyltransferase family 4 protein compare
LRK54_RS05535 -1.2 -5.5 glycosyltransferase family 2 protein compare
LRK54_RS16735 -1.2 -9.0 endopeptidase La compare
LRK54_RS01580 -1.2 -5.5 imidazole glycerol phosphate synthase subunit HisF compare
LRK54_RS13910 -1.2 -3.8 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA compare
LRK54_RS11765 -1.2 -6.4 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
LRK54_RS03200 -1.1 -4.7 integration host factor subunit alpha compare
LRK54_RS05630 -1.1 -5.2 D-sedoheptulose 7-phosphate isomerase compare
LRK54_RS12625 -1.1 -6.8 bifunctional aspartate kinase/diaminopimelate decarboxylase compare
LRK54_RS08930 -1.1 -4.8 XRE family transcriptional regulator compare
LRK54_RS04365 -1.1 -1.2 H-NS histone family protein compare
LRK54_RS16655 -1.1 -1.7 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
LRK54_RS11285 -1.1 -4.0 ABC transporter ATP-binding protein compare
LRK54_RS00305 -1.1 -7.6 asparagine synthase B compare
LRK54_RS03395 -1.1 -9.5 metalloprotease TldD compare
LRK54_RS08335 -1.0 -3.9 MbcA/ParS/Xre antitoxin family protein compare
LRK54_RS16015 -1.0 -7.9 formylglycine-generating enzyme family protein compare
LRK54_RS03675 -1.0 -1.5 redox-regulated ATPase YchF compare
LRK54_RS08670 -1.0 -7.5 LacI family transcriptional regulator compare
LRK54_RS07735 -1.0 -6.9 metalloregulator ArsR/SmtB family transcription factor compare
LRK54_RS09125 -1.0 -3.2 hypothetical protein compare
LRK54_RS09945 -1.0 -4.1 class I SAM-dependent methyltransferase compare
LRK54_RS06865 -1.0 -5.9 uroporphyrinogen-III C-methyltransferase compare
LRK54_RS10500 -1.0 -3.0 glycerophosphodiester phosphodiesterase compare
LRK54_RS16650 -1.0 -4.7 5'/3'-nucleotidase SurE compare
LRK54_RS05775 -1.0 -6.3 pyruvate kinase compare
LRK54_RS16935 -0.9 -7.5 bifunctional diguanylate cyclase/phosphodiesterase compare
LRK54_RS04060 -0.9 -5.8 isoaspartyl peptidase/L-asparaginase compare
LRK54_RS01685 -0.9 -6.8 tryptophan synthase subunit beta compare
LRK54_RS09100 -0.9 -7.2 acetyl-CoA C-acetyltransferase compare
LRK54_RS13915 -0.9 -7.6 beta-ketoacyl-ACP synthase I compare
LRK54_RS14245 -0.9 -2.0 hypothetical protein compare
LRK54_RS06905 -0.9 -6.0 DUF1190 domain-containing protein compare
LRK54_RS09825 -0.9 -5.7 alpha/beta hydrolase compare
LRK54_RS04035 -0.9 -5.8 ATP-binding protein compare
LRK54_RS04920 -0.9 -5.3 YebC/PmpR family DNA-binding transcriptional regulator compare
LRK54_RS09155 -0.9 -2.6 SPOR domain-containing protein compare
LRK54_RS12690 -0.9 -4.8 hypothetical protein compare
LRK54_RS06810 -0.9 -5.2 50S ribosomal protein L11 methyltransferase compare
LRK54_RS00805 -0.9 -2.8 segregation/condensation protein A compare
LRK54_RS12830 -0.9 -3.4 YeiH family protein compare
LRK54_RS03930 -0.9 -6.3 glycosyltransferase family 2 protein compare
LRK54_RS04050 -0.9 -5.3 glycoside hydrolase compare
LRK54_RS10510 -0.9 -4.4 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
LRK54_RS03745 -0.9 -5.2 NAD(P)H:quinone oxidoreductase compare
LRK54_RS17435 -0.9 -3.0 nucleoside diphosphate kinase regulator compare
LRK54_RS05670 -0.9 -4.0 glucose-1-phosphate thymidylyltransferase RfbA compare
LRK54_RS09110 -0.9 -7.7 phospholipase D family protein compare
LRK54_RS03105 -0.8 -6.0 phosphotransferase compare
LRK54_RS03375 -0.8 -6.4 metalloprotease PmbA compare
LRK54_RS06860 -0.8 -6.1 hypothetical protein compare
LRK54_RS04995 -0.8 -3.1 LacI family DNA-binding transcriptional regulator compare
LRK54_RS11805 -0.8 -5.9 ATP-dependent DNA helicase RecG compare
LRK54_RS12005 -0.8 -4.7 30S ribosomal protein S6--L-glutamate ligase compare
LRK54_RS08305 -0.8 -7.1 alpha/beta fold hydrolase compare
LRK54_RS11055 -0.8 -6.4 lipid-binding SYLF domain-containing protein compare
LRK54_RS06910 -0.8 -6.6 glutathionylspermidine synthase family protein compare
LRK54_RS02865 -0.8 -1.6 type II toxin-antitoxin system HicA family toxin compare
LRK54_RS16150 -0.8 -2.1 cell wall hydrolase compare
LRK54_RS16720 -0.8 -3.9 trigger factor compare
LRK54_RS02710 -0.8 -1.4 pentapeptide MXKDX repeat protein compare


Specific Phenotypes

None in this experiment

For Rhodanobacter denitrificans FW104-10B01 in r2a_control experiments