Experiment set1IT024 for Pseudomonas fluorescens FW300-N2C3

Compare to:

L-Arabinose carbon source

200 most important genes:

  gene name fitness t score description  
AO356_21405 -5.6 -3.8 3-isopropylmalate dehydratase compare
AO356_24585 -5.4 -8.3 L-arabonate dehydratase (EC 4.2.1.25) (from data) conserved
AO356_21415 -5.3 -9.4 3-isopropylmalate dehydrogenase compare
AO356_14435 -5.2 -5.1 anthranilate phosphoribosyltransferase compare
AO356_12525 -4.9 -6.7 acetylglutamate kinase compare
AO356_18275 -4.5 -11.6 ornithine carbamoyltransferase compare
AO356_06965 -4.4 -6.0 histidinol dehydrogenase compare
AO356_21440 -4.4 -9.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_24595 -4.4 -7.2 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) (from data) conserved
AO356_09815 -4.2 -5.7 imidazoleglycerol-phosphate dehydratase compare
AO356_13605 -4.1 -5.6 5,10-methylenetetrahydrofolate reductase compare
AO356_16075 -4.1 -4.0 Fis family transcriptional regulator compare
AO356_10300 -4.1 -6.5 3-phosphoglycerate dehydrogenase compare
AO356_14420 -4.0 -13.4 anthranilate synthase compare
AO356_20240 -4.0 -4.7 L-arabinose 1-dehydrogenase (EC 1.1.1.46) (from data) compare
AO356_13410 -4.0 -11.9 homoserine O-acetyltransferase compare
AO356_08635 -4.0 -10.1 ATP phosphoribosyltransferase regulatory subunit compare
AO356_09520 -3.9 -4.6 phosphoribosyl-AMP cyclohydrolase compare
AO356_18325 -3.8 -11.9 argininosuccinate synthase compare
AO356_14295 -3.8 -2.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_13085 -3.8 -9.5 N-acetylglutamate synthase compare
AO356_20235 -3.8 -14.4 L-arabinolactonase (EC 3.1.1.15) / D-galactonolactonase (EC 3.1.1.25) (from data) conserved
AO356_16175 -3.7 -7.9 acetolactate synthase 3 regulatory subunit compare
AO356_13405 -3.7 -10.1 methionine biosynthesis protein MetW compare
AO356_09525 -3.7 -6.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_13250 -3.7 -9.4 dihydroxy-acid dehydratase compare
AO356_22200 -3.7 -8.4 sirohydrochlorin ferrochelatase compare
AO356_19795 -3.6 -2.5 glycerol-3-phosphate dehydrogenase compare
AO356_09375 -3.6 -20.0 glutamate synthase compare
AO356_08735 -3.6 -13.3 phosphoserine phosphatase compare
AO356_09810 -3.6 -4.2 imidazole glycerol phosphate synthase subunit HisH compare
AO356_16180 -3.6 -14.4 ketol-acid reductoisomerase compare
AO356_00555 -3.5 -10.7 sulfite reductase compare
AO356_00355 -3.5 -8.9 chemotaxis protein CheY compare
AO356_21465 -3.5 -4.7 amidophosphoribosyltransferase compare
AO356_12520 -3.5 -2.4 orotate phosphoribosyltransferase compare
AO356_20255 -3.4 -9.0 arabinose ABC transporter permease conserved
AO356_14430 -3.4 -9.2 anthranilate synthase compare
AO356_06970 -3.4 -7.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_16170 -3.4 -11.4 acetolactate synthase 3 catalytic subunit compare
AO356_09370 -3.4 -12.8 glutamate synthase compare
AO356_20245 -3.4 -11.9 sugar ABC transporter substrate-binding protein conserved
AO356_10915 -3.4 -8.6 tryptophan synthase subunit beta compare
AO356_27215 -3.4 -4.5 hypothetical protein compare
AO356_21400 -3.3 -5.6 isopropylmalate isomerase compare
AO356_20250 -3.3 -16.1 L-arabinose transporter ATP-binding protein conserved
AO356_10910 -3.2 -8.8 tryptophan synthase subunit alpha compare
AO356_08905 -3.2 -2.2 glycosyl transferase compare
AO356_06550 -3.1 -10.4 2-isopropylmalate synthase compare
AO356_24590 -3.1 -9.8 MFS transporter conserved
AO356_09800 -3.1 -4.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_20830 -3.1 -3.6 phosphoadenosine phosphosulfate reductase compare
AO356_10340 -3.0 -13.1 phosphoserine phosphatase compare
AO356_19060 -3.0 -15.5 (p)ppGpp synthetase compare
AO356_19045 -2.9 -13.4 chemotaxis protein CheY compare
AO356_14440 -2.9 -3.5 indole-3-glycerol-phosphate synthase compare
AO356_02265 -2.9 -5.1 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_16870 -2.8 -11.4 benzoate transporter compare
AO356_25750 -2.8 -4.1 GntR family transcriptional regulator compare
AO356_16095 -2.8 -9.4 molecular chaperone DnaK compare
AO356_21470 -2.8 -8.1 O-succinylhomoserine sulfhydrylase compare
AO356_27250 -2.6 -7.8 hypothetical protein compare
AO356_12780 -2.6 -7.4 argininosuccinate lyase compare
AO356_06615 -2.6 -2.0 FeS assembly protein IscX compare
AO356_27205 -2.6 -7.9 hypothetical protein compare
AO356_04560 -2.5 -2.4 serine peptidase compare
AO356_22795 -2.5 -2.8 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_01750 -2.5 -3.6 ATP-dependent Clp protease proteolytic subunit compare
AO356_18025 -2.4 -2.8 ATP-dependent DNA helicase RuvB compare
AO356_01745 -2.4 -4.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_00560 -2.3 -2.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_17520 -2.3 -2.2 phosphoribosylformylglycinamidine synthase compare
AO356_15165 -2.3 -3.0 protein cII compare
AO356_19090 -2.3 -2.6 phosphoribosylaminoimidazole synthetase compare
AO356_09795 -2.2 -1.5 imidazole glycerol phosphate synthase subunit HisF compare
AO356_14395 -2.2 -12.7 polyamine ABC transporter substrate-binding protein compare
AO356_27210 -2.2 -8.3 hypothetical protein compare
AO356_06960 -2.2 -6.6 histidinol-phosphate aminotransferase compare
AO356_18730 -2.1 -8.8 arginine N-succinyltransferase compare
AO356_10920 -2.1 -8.8 LysR family transcriptional regulator compare
AO356_16665 -2.0 -9.4 sulfate adenylyltransferase compare
AO356_19050 -2.0 -3.2 cysteine synthase compare
AO356_27230 -2.0 -5.6 hypothetical protein compare
AO356_14400 -2.0 -5.9 polyamine ABC transporter permease compare
AO356_20785 -1.9 -2.1 hypothetical protein compare
AO356_07480 -1.8 -3.3 carbamoyl phosphate synthase large subunit compare
AO356_02315 -1.8 -4.2 DNA topoisomerase I compare
AO356_16670 -1.8 -9.9 adenylylsulfate kinase compare
AO356_17950 -1.7 -7.4 histidine kinase compare
AO356_08235 -1.7 -7.6 histidine kinase compare
AO356_24600 -1.7 -3.4 ketoglutarate semialdehyde dehydrogenase compare
AO356_00880 -1.7 -2.1 integration host factor subunit alpha compare
AO356_16080 -1.7 -9.1 ATPase compare
AO356_21330 -1.6 -7.0 aromatic amino acid aminotransferase compare
AO356_03810 -1.6 -4.5 anti-anti-sigma factor compare
AO356_01115 -1.6 -1.9 hypothetical protein compare
AO356_12735 -1.6 -2.1 diaminopimelate epimerase compare
AO356_03800 -1.6 -2.0 histidine kinase compare
AO356_19520 -1.6 -3.7 isochorismatase compare
AO356_07915 -1.5 -2.5 exodeoxyribonuclease V subunit beta compare
AO356_19085 -1.5 -6.7 phosphoribosylglycinamide formyltransferase compare
AO356_06685 -1.5 -1.7 preprotein translocase subunit YajC compare
AO356_09765 -1.5 -2.8 sulfurtransferase compare
AO356_06385 -1.5 -3.1 recombinase XerD compare
AO356_07005 -1.5 -1.7 ABC transporter ATP-binding protein compare
AO356_10140 -1.5 -8.0 phosphoenolpyruvate carboxykinase [ATP] compare
AO356_10005 -1.5 -7.6 branched-chain amino acid permease (azaleucine resistance) compare
AO356_18020 -1.5 -3.3 ATP-dependent DNA helicase RuvA compare
AO356_05670 -1.4 -2.6 recombinase RecA compare
AO356_02175 -1.4 -5.8 transaldolase compare
AO356_10485 -1.4 -2.5 hypothetical protein compare
AO356_12990 -1.3 -5.4 5-formyltetrahydrofolate cyclo-ligase compare
AO356_11315 -1.3 -1.2 shikimate dehydrogenase compare
AO356_20880 -1.3 -2.5 3-methylitaconate isomerase compare
AO356_07910 -1.3 -1.5 exodeoxyribonuclease V subunit alpha compare
AO356_24845 -1.3 -2.3 ATPase compare
AO356_08895 -1.3 -1.5 GlcNAc-PI de-N-acetylase compare
AO356_13685 -1.3 -2.9 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_10000 -1.3 -3.8 hypothetical protein compare
AO356_27180 -1.2 -2.7 hypothetical protein compare
AO356_01840 -1.2 -2.2 uracil permease compare
AO356_28695 -1.2 -2.6 IclR family transcriptional regulator compare
AO356_03435 -1.2 -2.5 integration host factor subunit beta compare
AO356_11025 -1.2 -3.8 transcriptional regulator PhoU compare
AO356_18805 -1.2 -1.3 magnesium transporter compare
AO356_07000 -1.2 -2.1 ABC transporter permease compare
AO356_08955 -1.2 -6.1 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
AO356_11610 -1.2 -1.6 glycerol acyltransferase compare
AO356_01555 -1.2 -5.6 acyl-CoA dehydrogenase compare
AO356_16850 -1.1 -6.5 serine hydroxymethyltransferase compare
AO356_20875 -1.1 -5.4 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO356_30345 -1.1 -3.8 IclR family transcriptional regulator compare
AO356_08465 -1.1 -2.1 protein hupE compare
AO356_08660 -1.1 -5.2 tRNA dimethylallyltransferase compare
AO356_03715 -1.1 -6.1 chemotaxis protein CheA compare
AO356_12380 -1.1 -4.6 ATP-dependent DNA helicase RecG compare
AO356_18000 -1.1 -1.2 FmdB family transcriptional regulator compare
AO356_08875 -1.1 -2.2 toluene tolerance protein compare
AO356_21410 -1.0 -2.9 SAM-dependent methyltransferase compare
AO356_19425 -1.0 -1.5 lipid A biosynthesis lauroyl acyltransferase compare
AO356_25390 -1.0 -2.2 enamine deaminase RidA compare
AO356_03070 -1.0 -6.3 histidine kinase compare
AO356_18910 -1.0 -5.9 chemotaxis protein compare
AO356_12900 -1.0 -2.3 exopolyphosphatase compare
AO356_08585 -1.0 -2.4 50S ribosomal protein L9 compare
AO356_15460 -1.0 -1.2 hypothetical protein compare
AO356_12375 -1.0 -6.2 histidine kinase compare
AO356_09640 -0.9 -2.5 histidine utilization repressor compare
AO356_10330 -0.9 -6.9 threonine dehydratase compare
AO356_09995 -0.9 -3.5 LysR family transcriptional regulator compare
AO356_18735 -0.9 -3.3 arginine N-succinyltransferase compare
AO356_10890 -0.9 -2.6 holliday junction resolvasome, helicase subunit compare
AO356_00615 -0.9 -2.4 choline ABC transporter ATP-binding protein compare
AO356_09835 -0.9 -3.6 iron transporter compare
AO356_17985 -0.9 -3.1 cold-shock protein compare
AO356_27240 -0.9 -2.9 hypothetical protein compare
AO356_17065 -0.9 -0.9 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
AO356_14100 -0.9 -5.2 malate synthase G compare
AO356_17075 -0.9 -1.2 cytochrome C compare
AO356_19810 -0.9 -2.7 esterase compare
AO356_22695 -0.9 -2.0 glycerol-3-phosphatase compare
AO356_17485 -0.9 -2.9 elongation factor 4 compare
AO356_14390 -0.9 -3.8 spermidine/putrescine ABC transporter substrate-binding protein compare
AO356_19170 -0.9 -2.4 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
AO356_03180 -0.8 -2.6 CysB family transcriptional regulator compare
AO356_03405 -0.8 -2.4 serine acetyltransferase compare
AO356_21260 -0.8 -1.0 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
AO356_06605 -0.8 -2.3 23S rRNA (adenine(2503)-C2)-methyltransferase compare
AO356_19420 -0.8 -1.2 septum formation inhibitor compare
AO356_01740 -0.8 -1.9 DNA-binding protein compare
AO356_17070 -0.8 -1.1 cytochrome B compare
AO356_27360 -0.8 -2.3 nitrile hydratase subunit alpha compare
AO356_14285 -0.8 -2.4 glycerol-3-phosphate acyltransferase compare
AO356_08985 -0.8 -0.9 hypothetical protein compare
AO356_13475 -0.8 -2.8 glutathione synthetase compare
AO356_27995 -0.8 -1.7 thioredoxin reductase compare
AO356_16450 -0.8 -1.9 GTP-binding protein compare
AO356_08275 -0.8 -1.5 precorrin isomerase compare
AO356_07080 -0.8 -2.6 FagA protein compare
AO356_06415 -0.8 -2.6 cytochrome C assembly protein compare
AO356_25420 -0.8 -1.6 chemotaxis protein CheY compare
AO356_16350 -0.7 -1.7 hypothetical protein compare
AO356_11465 -0.7 -4.2 DNA polymerase I compare
AO356_18155 -0.7 -1.3 cold-shock protein compare
AO356_20090 -0.7 -1.6 protein tyrosine phosphatase compare
AO356_08110 -0.7 -2.5 acyl dehydratase compare
AO356_15160 -0.7 -1.4 hypothetical protein compare
AO356_07920 -0.7 -2.8 exodeoxyribonuclease V subunit gamma compare
AO356_07400 -0.7 -2.9 pseudouridine synthase compare
AO356_12945 -0.7 -2.6 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
AO356_18725 -0.7 -2.5 acetylornithine aminotransferase compare
AO356_15815 -0.7 -1.3 gamma-glutamyl kinase compare
AO356_28955 -0.7 -1.6 hypothetical protein compare
AO356_00565 -0.7 -3.4 peptidase compare
AO356_03095 -0.7 -3.6 protease HtpX compare
AO356_11680 -0.7 -1.4 chromosome partitioning protein ParB compare
AO356_02190 -0.7 -3.1 hypothetical protein compare
AO356_06655 -0.7 -3.3 serine acetyltransferase compare
AO356_24350 -0.7 -2.3 type VI secretion protein compare
AO356_29160 -0.7 -1.5 (2Fe-2S)-binding protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source L-Arabinose in Pseudomonas fluorescens FW300-N2C3

For carbon source L-Arabinose across organisms