Experiment set1IT024 for Pseudomonas fluorescens FW300-N1B4

Compare to:

L-Arabinose carbon source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_414 -4.4 -3.1 transcriptional regulator compare
Pf1N1B4_412 -4.1 -4.0 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf1N1B4_4623 -4.0 -5.4 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) (from data) conserved
Pf1N1B4_6 -4.0 -4.7 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_2880 -3.7 -10.8 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_1831 -3.7 -11.0 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_1307 -3.6 -2.5 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_1624 -3.6 -8.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_15 -3.5 -4.2 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_2548 -3.4 -6.5 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_1534 -3.4 -17.0 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_12 -3.4 -7.5 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2303 -3.4 -13.6 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_2545 -3.3 -12.9 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_1626 -3.3 -6.4 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_1067 -3.3 -6.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_847 -3.3 -8.9 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_4621 -3.2 -4.8 L-arabonate dehydratase (EC 4.2.1.25) compare
Pf1N1B4_2549 -3.2 -9.5 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_2547 -3.1 -3.7 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_2272 -3.1 -3.7 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_742 -3.1 -7.9 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_3506 -3.0 -7.5 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_4622 -3.0 -7.1 Nitrate/nitrite transporter conserved
Pf1N1B4_1533 -3.0 -8.6 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_1830 -3.0 -8.5 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_1434 -2.9 -8.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2338 -2.9 -7.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_2384 -2.8 -9.4 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_2858 -2.8 -10.6 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_2879 -2.7 -7.4 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_5666 -2.7 -3.6 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_410 -2.7 -8.8 ABC transporter for D-galactose/L-arabinose, ATPase component (from data) conserved
Pf1N1B4_2337 -2.6 -5.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_2540 -2.6 -12.8 Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) compare
Pf1N1B4_2282 -2.5 -9.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2878 -2.5 -8.4 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_1408 -2.5 -4.3 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_1315 -2.5 -8.1 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_2859 -2.5 -14.3 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_4065 -2.5 -7.9 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_3812 -2.4 -8.6 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_2541 -2.4 -7.7 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf1N1B4_413 -2.4 -10.6 L-arabinolactonase (EC 3.1.1.15) (from data) conserved
Pf1N1B4_5665 -2.4 -5.3 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_762 -2.4 -6.1 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_1617 -2.4 -7.6 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_1627 -2.3 -4.7 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_769 -2.3 -6.2 Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) compare
Pf1N1B4_3917 -2.3 -4.9 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf1N1B4_866 -2.3 -2.6 Iron-sulfur cluster regulator IscR compare
Pf1N1B4_1565 -2.2 -4.7 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_411 -2.2 -7.1 ABC transporter for D-galactose/L-arabinose, substrate-binding component (from data) conserved
Pf1N1B4_409 -2.2 -4.6 ABC transporter for D-galactose/L-arabinose, permease component (from data) compare
Pf1N1B4_652 -2.2 -8.3 Sensory box histidine kinase compare
Pf1N1B4_257 -2.2 -6.6 sensor histidine kinase/response regulator compare
Pf1N1B4_1317 -2.2 -3.2 Sensor histidine kinase/response regulator compare
Pf1N1B4_350 -2.2 -6.9 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_1625 -2.1 -5.1 FIG00956267: hypothetical protein compare
Pf1N1B4_648 -2.1 -17.7 Outer membrane porin, OprD family compare
Pf1N1B4_1113 -2.1 -6.0 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_647 -2.1 -8.0 hypothetical protein compare
Pf1N1B4_959 -2.1 -12.8 Stringent starvation protein A compare
Pf1N1B4_2860 -2.1 -6.6 FIG00954153: hypothetical protein compare
Pf1N1B4_3751 -1.9 -2.3 FIG00953060: hypothetical protein compare
Pf1N1B4_3697 -1.9 -6.1 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_3241 -1.8 -2.8 hypothetical protein compare
Pf1N1B4_1906 -1.7 -3.6 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_3081 -1.7 -14.0 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_5451 -1.7 -2.9 hypothetical protein compare
Pf1N1B4_767 -1.7 -4.7 Glycerol kinase (EC 2.7.1.30) compare
Pf1N1B4_3849 -1.7 -4.3 Transcriptional regulator, GntR family compare
Pf1N1B4_2487 -1.7 -7.5 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_5834 -1.7 -2.5 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Pf1N1B4_2225 -1.6 -8.9 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf1N1B4_4419 -1.6 -2.5 Organosulfonate utilization protein SsuF compare
Pf1N1B4_1590 -1.5 -5.2 Histidine utilization repressor compare
Pf1N1B4_2209 -1.5 -6.3 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_733 -1.5 -2.1 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Pf1N1B4_4659 -1.4 -2.2 Putative outer membrane lipoprotein compare
Pf1N1B4_2280 -1.4 -6.9 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_1180 -1.4 -1.6 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf1N1B4_5018 -1.3 -2.2 FIG00962345: hypothetical protein compare
Pf1N1B4_3508 -1.3 -3.7 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf1N1B4_1916 -1.3 -2.0 Chaperone protein YscY (Yop proteins translocation protein Y) compare
Pf1N1B4_1653 -1.3 -5.6 Branched-chain amino acid transport protein AzlC compare
Pf1N1B4_886 -1.3 -2.3 FIG137478: Hypothetical protein compare
Pf1N1B4_1668 -1.2 -4.1 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_2568 -1.2 -2.7 Translation elongation factor Tu compare
Pf1N1B4_1060 -1.2 -2.5 FIG137478: Hypothetical protein YbgI compare
Pf1N1B4_5330 -1.2 -1.8 hypothetical protein compare
Pf1N1B4_4494 -1.2 -2.9 hypothetical protein compare
Pf1N1B4_4123 -1.2 -2.1 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf1N1B4_262 -1.2 -9.5 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf1N1B4_2168 -1.2 -5.6 FIG004064: hypothetical protein compare
Pf1N1B4_2112 -1.1 -8.1 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_5463 -1.1 -2.2 hypothetical protein compare
Pf1N1B4_1057 -1.1 -2.4 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_2526 -1.1 -8.3 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_3143 -1.1 -2.5 RecA protein compare
Pf1N1B4_1566 -1.1 -3.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_1749 -1.1 -1.6 Prevent host death protein, Phd antitoxin compare
Pf1N1B4_4299 -1.1 -2.7 sensor histidine kinase compare
Pf1N1B4_1535 -1.1 -2.6 hypothetical protein compare
Pf1N1B4_3833 -1.1 -5.3 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_2169 -1.1 -2.2 FIG00953808: hypothetical protein compare
Pf1N1B4_1159 -1.1 -2.5 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf1N1B4_2975 -1.1 -1.5 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) compare
Pf1N1B4_4627 -1.1 -2.8 FIG00957600: hypothetical protein compare
Pf1N1B4_2706 -1.1 -2.3 FIG00954871: hypothetical protein compare
Pf1N1B4_3325 -1.1 -1.5 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_962 -1.1 -6.0 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf1N1B4_821 -1.0 -5.9 Glucose dehydrogenase, PQQ-dependent (EC 1.1.5.2) compare
Pf1N1B4_2486 -1.0 -2.0 hypothetical protein compare
Pf1N1B4_1568 -1.0 -2.3 Twin-arginine translocation protein TatB compare
Pf1N1B4_4053 -1.0 -3.4 Cold shock protein CspD compare
Pf1N1B4_1 -1.0 -1.6 Colicin V production protein compare
Pf1N1B4_715 -1.0 -3.8 Iron-regulated protein A precursor compare
Pf1N1B4_476 -1.0 -2.2 ABC-type multidrug transport system, ATPase component compare
Pf1N1B4_13 -1.0 -2.5 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf1N1B4_27 -1.0 -3.4 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_835 -1.0 -2.1 Trehalose-6-phosphate hydrolase (EC 3.2.1.93) compare
Pf1N1B4_273 -1.0 -3.2 putative membrane protein compare
Pf1N1B4_419 -1.0 -1.8 Transcriptional regulator, TetR family compare
Pf1N1B4_1504 -1.0 -1.6 Acyl carrier protein compare
Pf1N1B4_2552 -1.0 -2.5 OsmC/Ohr family protein compare
Pf1N1B4_4975 -1.0 -2.5 hypothetical protein compare
Pf1N1B4_724 -1.0 -2.2 DNA-binding response regulator ColR compare
Pf1N1B4_2011 -1.0 -5.3 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_2958 -1.0 -2.2 Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) compare
Pf1N1B4_2177 -1.0 -1.1 FIG00953342: hypothetical protein compare
Pf1N1B4_2621 -1.0 -1.5 PspA/IM30 family protein compare
Pf1N1B4_4517 -1.0 -2.3 Dihydropyrimidinase (EC 3.5.2.2) compare
Pf1N1B4_539 -1.0 -1.8 Transcriptional regulators compare
Pf1N1B4_4343 -1.0 -2.0 hypothetical protein compare
Pf1N1B4_5433 -1.0 -1.9 hypothetical protein compare
Pf1N1B4_4436 -1.0 -2.4 Glutaminase (EC 3.5.1.2) compare
Pf1N1B4_961 -1.0 -7.3 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf1N1B4_1128 -1.0 -1.6 hypothetical protein compare
Pf1N1B4_3524 -0.9 -2.6 FIG00955363: hypothetical protein compare
Pf1N1B4_1185 -0.9 -3.6 Lactate-responsive regulator LldR in Enterobacteria, GntR family compare
Pf1N1B4_2695 -0.9 -1.6 Rare lipoprotein A precursor compare
Pf1N1B4_5476 -0.9 -1.4 hypothetical protein compare
Pf1N1B4_1837 -0.9 -1.2 Osmotically inducible protein C compare
Pf1N1B4_1519 -0.9 -2.4 3-oxoacyl-[ACP] reductase (EC 1.1.1.100) compare
Pf1N1B4_1011 -0.9 -3.1 ribosomal subunit interface protein, putative compare
Pf1N1B4_4218 -0.9 -2.1 Multidrug resistance protein A compare
Pf1N1B4_5071 -0.9 -1.7 FIG00959535: hypothetical protein compare
Pf1N1B4_2854 -0.9 -2.8 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) compare
Pf1N1B4_4624 -0.9 -2.3 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) compare
Pf1N1B4_348 -0.9 -2.9 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf1N1B4_2147 -0.9 -2.9 Putrescine utilization regulator compare
Pf1N1B4_2196 -0.9 -2.6 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_4553 -0.9 -2.3 FIG00959354: hypothetical protein compare
Pf1N1B4_4446 -0.9 -1.5 DNA topoisomerase III (EC 5.99.1.2) compare
Pf1N1B4_5359 -0.9 -2.2 hypothetical protein compare
Pf1N1B4_3777 -0.9 -2.7 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p compare
Pf1N1B4_3938 -0.9 -1.7 Integral membrane protein TerC compare
Pf1N1B4_2317 -0.9 -2.5 Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1) compare
Pf1N1B4_6041 -0.9 -1.5 Carbon storage regulator compare
Pf1N1B4_4962 -0.9 -2.5 C4-dicarboxylate transport protein compare
Pf1N1B4_2503 -0.9 -5.5 Coenzyme PQQ synthesis protein F compare
Pf1N1B4_3799 -0.9 -2.2 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) compare
Pf1N1B4_3518 -0.8 -1.8 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_1366 -0.8 -2.1 FMN-dependent NADH-azoreductase compare
Pf1N1B4_1334 -0.8 -1.4 FIG00955840: hypothetical protein compare
Pf1N1B4_1474 -0.8 -2.9 Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42) compare
Pf1N1B4_1485 -0.8 -2.2 FIG00963848: hypothetical protein compare
Pf1N1B4_2102 -0.8 -1.0 hypothetical protein compare
Pf1N1B4_1981 -0.8 -4.1 Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79) compare
Pf1N1B4_5452 -0.8 -3.1 hypothetical protein compare
Pf1N1B4_960 -0.8 -5.0 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf1N1B4_3531 -0.8 -1.5 FIG039061: hypothetical protein related to heme utilization compare
Pf1N1B4_612 -0.8 -2.4 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
Pf1N1B4_4585 -0.8 -2.1 Putative Isoquinoline 1-oxidoreductase subunit, Mll3835 protein compare
Pf1N1B4_2857 -0.8 -2.1 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_3927 -0.8 -1.3 hypothetical protein compare
Pf1N1B4_327 -0.8 -1.2 hypothetical protein compare
Pf1N1B4_197 -0.8 -1.7 FIG139991: Putative thiamine pyrophosphate-requiring enzyme compare
Pf1N1B4_1235 -0.8 -3.3 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf1N1B4_2807 -0.8 -1.7 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf1N1B4_3279 -0.8 -2.0 putative membrane protein compare
Pf1N1B4_4030 -0.8 -2.1 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_4297 -0.8 -1.8 FIG00966599: hypothetical protein compare
Pf1N1B4_718 -0.8 -3.4 outer membrane component of uptake system, probably for ferrous iron (from data) compare
Pf1N1B4_345 -0.8 -1.3 Integration host factor beta subunit compare
Pf1N1B4_1236 -0.8 -3.7 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf1N1B4_1256 -0.8 -1.8 Transcriptional regulator, LysR family compare
Pf1N1B4_3538 -0.8 -1.4 Transcriptional regulator, AraC family compare
Pf1N1B4_275 -0.8 -1.3 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_1874 -0.8 -2.0 FIG00953549: hypothetical protein compare
Pf1N1B4_1329 -0.8 -3.2 Cobalamin biosynthesis protein CobG compare
Pf1N1B4_2688 -0.8 -2.3 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf1N1B4_379 -0.8 -2.5 Protein of unknown function UPF0060 compare
Pf1N1B4_532 -0.8 -1.7 Transcriptional regulators, LysR family compare
Pf1N1B4_5448 -0.8 -1.2 hypothetical protein compare
Pf1N1B4_3939 -0.8 -2.1 FIG00953489: hypothetical protein compare
Pf1N1B4_6035 -0.8 -1.9 D-ribose ABC transporter, substrate-binding component RbsB (from data) compare
Pf1N1B4_3111 -0.8 -1.3 tRNA pseudouridine 13 synthase (EC 4.2.1.-) compare
Pf1N1B4_3130 -0.8 -1.9 Bacteriophage protein GP46 compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source L-Arabinose in Pseudomonas fluorescens FW300-N1B4

For carbon source L-Arabinose across organisms