Experiment set1IT024 for Sinorhizobium meliloti 1021

Compare to:

L-Histidine carbon source

200 most important genes:

  gene name fitness t score description  
SMc02766 -8.4 -14.0 tryptophan synthase subunit beta compare
SMc04405 -8.2 -8.0 3-isopropylmalate dehydrogenase compare
SMc00711 -8.1 -5.6 cyclohexadienyl dehydrogenase compare
SMc01726 -8.0 -7.8 acetylglutamate kinase compare
SMc01801 -7.9 -5.0 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc04045 -7.8 -5.4 dihydroxy-acid dehydratase compare
SMc02717 -7.7 -9.2 2-isopropylmalate synthase compare
SMc02899 -7.7 -11.8 prephenate dehydratase compare
SMc00640 -7.6 -9.1 phosphoserine aminotransferase compare
SMc03069 -7.5 -4.7 6-phosphogluconolactonase compare
SMc02245 -7.5 -7.3 dihydroorotate dehydrogenase 2 compare
SMc01843 -7.5 -12.5 5,10-methylenetetrahydrofolate reductase compare
SMc01431 -7.4 -10.2 acetolactate synthase 3 catalytic subunit compare
SMc00235 -7.0 -8.3 anthranilate phosphoribosyltransferase compare
SMc00236 -7.0 -6.2 Indole-3-glycerol phosphate synthase compare
SMc01028 -6.9 -13.3 phosphopyruvate hydratase compare
SMc01494 -6.9 -11.2 phosphoserine phosphatase compare
SMa1635 -6.8 -2.5 hypothetical protein compare
SMc02838 -6.7 -8.2 phosphoglyceromutase compare
SMc00494 -6.7 -2.5 phosphoribosylformylglycinamidine synthase subunit PurS compare
SMc00412 -6.7 -4.6 orotidine 5'-phosphate decarboxylase compare
SMc03776 -6.7 -4.6 gamma-glutamyl kinase compare
SMc04002 -6.6 -8.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
SMc02137 -6.6 -6.4 ornithine carbamoyltransferase compare
SMc00293 -6.6 -11.0 homoserine dehydrogenase compare
SMc00673 -6.5 -15.7 Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data) conserved
SMc03823 -6.5 -10.9 isopropylmalate isomerase large subunit compare
SMc02725 -6.4 -14.1 anthranilate synthase compare
SMc00554 -6.4 -8.7 amidophosphoribosyltransferase compare
SMc03826 -6.4 -4.4 argininosuccinate synthase compare
SMc03797 -6.3 -12.8 homoserine O-succinyltransferase compare
SMc00488 -6.3 -16.8 phosphoribosylformylglycinamidine synthase II compare
SMc02767 -6.3 -9.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
SM_b21166 -6.3 -8.6 Imidazolonepropionase (EC 3.5.2.7) (from data) conserved
SMc02562 -6.2 -10.4 phosphoenolpyruvate carboxykinase compare
SMc03112 -6.1 -20.1 B12-dependent methionine synthase compare
SM_b20048 -6.1 -17.2 transcriptional regulator compare
SMc02975 -6.0 -10.3 phosphoenolpyruvate carboxykinase regulator transcription regulator protein compare
SMc03229 -5.8 -3.7 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc00815 -5.7 -3.6 inosine 5'-monophosphate dehydrogenase compare
SMc04088 -5.6 -9.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SMc02165 -5.6 -11.4 orotate phosphoribosyltransferase compare
SMc03979 -5.5 -3.8 glyceraldehyde-3-phosphate dehydrogenase compare
SMc00012 -5.5 -3.5 cytochrome C oxidase assembly protein compare
SMc00993 -5.5 -12.2 phosphoribosylamine--glycine ligase compare
SM_b21163 -5.4 -13.6 Urocanate hydratase (EC 4.2.1.49) (from data) conserved
SMc00495 -5.4 -7.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc02217 -5.4 -10.3 O-succinylhomoserine sulfhydrylase compare
SMc04085 -5.3 -5.2 hypothetical protein compare
SMc01880 -5.3 -3.7 pantoate--beta-alanine ligase compare
SMc03981 -5.3 -4.6 phosphoglycerate kinase compare
SMc03763 -5.2 -3.6 cytosine-specific methyltransferase compare
SMc01360 -5.2 -5.1 aspartate carbamoyltransferase catalytic subunit compare
SMc02765 -5.1 -11.2 tryptophan synthase subunit alpha compare
SMc03974 -5.1 -8.3 hypothetical protein compare
SMc01881 -5.1 -4.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc03777 -5.0 -10.5 gamma-glutamyl phosphate reductase compare
SMc00614 -5.0 -8.2 phosphoribosylglycinamide formyltransferase compare
SMc01215 -4.9 -3.4 carbamoyl phosphate synthase large subunit compare
SMc01569 -4.9 -2.5 carbamoyl phosphate synthase small subunit compare
SMc00615 -4.9 -5.3 phosphoribosylaminoimidazole synthetase compare
SMc02166 -4.9 -9.2 dihydroorotase compare
SM_b21165 -4.9 -7.4 Histidine ammonia-lyase (EC 4.3.1.3) (from data) conserved
SM_b21175 -4.8 -6.6 phosphate uptake ABC transporter permease compare
SMc02138 -4.8 -6.8 acetylornithine transaminase compare
SMc03978 -4.8 -4.6 transketolase compare
SMc02172 -4.7 -15.7 transcriptional regulator compare
SMc04001 -4.7 -1.7 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SMc01361 -4.6 -7.5 dihydroorotase compare
SMc01770 -4.5 -2.0 serine hydroxymethyltransferase compare
SMc00641 -4.5 -6.1 D-3-phosphoglycerate dehydrogenase compare
SM_b21164 -4.4 -7.7 N-formylglutamate deformylase (EC 3.5.1.68) (from data) conserved
SMc03795 -4.4 -2.3 isopropylmalate isomerase small subunit compare
SMc02246 -4.4 -1.6 hypothetical protein compare
SMc00017 -4.4 -2.2 homoserine kinase compare
SMc00493 -4.1 -8.2 phosphoribosylformylglycinamidine synthase I compare
SMc02755 -4.0 -7.5 S-adenosyl-L-homocysteine hydrolase compare
SMc01054 -4.0 -5.2 required for sulfate utilization, putative electron source for sulfite reductase CysI (from data) compare
SMc00131 -3.9 -13.9 transcriptional regulator compare
SM_b21177 -3.8 -10.6 phosphate uptake ABC transporter ATP-binding protein compare
SMc02425 -3.7 -3.6 transcriptional regulator compare
SMc00450 -3.6 -3.7 protoheme IX farnesyltransferase compare
SMc02707 -3.6 -4.7 hypothetical protein compare
SMc00982 -3.6 -9.0 dioxygenase compare
SM_b21176 -3.6 -6.5 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc02058 -3.6 -3.3 YAJC protein compare
SMc02123 -3.5 -5.9 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
SMc01495 -3.4 -6.5 transcriptional regulator compare
SMc02124 -3.3 -16.3 nitrite reductase compare
SMc01430 -3.3 -5.7 acetolactate synthase 3 regulatory subunit compare
SMc04346 -3.2 -3.9 ketol-acid reductoisomerase compare
SMc02102 -3.2 -6.1 hypothetical protein compare
SM_b21174 -3.2 -7.8 phosphate uptake ABC transporter permease compare
SMc02362 -3.2 -4.2 cytochrome c-type biogenesis protein CcmE compare
SMc01206 -2.9 -3.2 queuine tRNA-ribosyltransferase compare
SMc00419 -2.8 -5.7 glutathione synthetase compare
SMc00295 -2.8 -2.0 hypothetical protein compare
SMa0789 -2.8 -5.8 GntR family transcriptional regulator compare
SMc02435 -2.8 -4.6 methyltransferase compare
SMc00876 -2.7 -9.1 ATP-binding MRP protein compare
SMc01438 -2.7 -7.5 protease precursor signal peptide protein compare
SMc02227 -2.7 -7.4 fatty oxidation complex enoyl-COA hydratase/3-hydroxyacyl-COA dehydrogenase/3-hydroxybutyryl-COA epimerase compare
SMc00981 -2.6 -6.3 ferredoxin protein compare
SMc02118 -2.6 -10.3 ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, periplasmic substrate-binding component (from data) conserved
SMc01948 -2.6 -7.2 high-affinity branched-chain amino acid ABC transporter ATP-binding protein compare
SMc02229 -2.6 -12.0 acyl-CoA dehydrogenase compare
SMc03849 -2.6 -2.6 heme exporter C (cytochrome C-type biogenesis protein) transmembrane compare
SMc02308 -2.6 -2.9 hypothetical protein compare
SMc01842 -2.6 -2.8 methyltransferase transcription regulator protein compare
SMc01951 -2.6 -8.3 high-affinity branched-chain amino acid ABC transporter permease compare
SMc02120 -2.5 -8.1 ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, permease component 2 (from data) conserved
SMc02460 -2.5 -12.6 hypothetical protein compare
SMc03850 -2.4 -2.1 heme exporter D (cytochrome C-type biogenesis protein) transmembrane compare
SMc00689 -2.4 -5.0 lipoprotein compare
SMa2020 -2.4 -7.4 Transcriptional regulator compare
SMc01592 -2.4 -11.9 transcriptional regulator compare
SMc02141 -2.4 -4.4 phosphate transporter PhoU compare
SMc02119 -2.4 -12.8 ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, permease component 1 (from data) conserved
SMa1442 -2.3 -5.4 GntR family transcriptional regulator compare
SMc02753 -2.3 -2.3 PTS system transporter subunit IIA compare
SM_b20773 -2.3 -5.0 GntR family transcriptional regulator compare
SMc02683 -2.3 -2.8 hypothetical protein compare
SMc01950 -2.2 -13.4 high-affinity branched-chain amino acid ABC transporter permease compare
SMc01164 -2.2 -8.0 hypothetical protein compare
SMc01053 -2.2 -6.5 siroheme synthase compare
SMc00025 -2.2 -5.2 pyruvate phosphate dikinase compare
SMc00726 -2.2 -1.4 thiol:disulfide interchange redox-active center transmembrane protein compare
SMc00294 -2.2 -6.5 aminotransferase compare
SM_b21598 -2.2 -7.5 transcriptional regulator compare
SMc00010 -2.2 -2.2 cytochrome C oxidase polypeptide I transmembrane protein compare
SMc01768 -2.2 -4.9 transcriptional regulator compare
SMc04093 -2.2 -13.9 acetyl-CoA synthetase compare
SMc03070 -2.1 -9.4 glucose-6-phosphate 1-dehydrogenase compare
SMc02833 -2.1 -3.8 penicillin-insensitive murein endopeptidase compare
SM_b20148 -2.1 -7.3 transcriptional regulator compare
SMc02121 -2.1 -2.5 ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, ATPase component (from data) compare
SMc02147 -2.1 -7.1 phosphate regulon sensor histidine kinase transmembrane protein compare
SMc01007 -2.1 -2.2 hypothetical protein compare
SMc01949 -2.0 -5.4 high-affinity branched-chain amino acid ABC transporter ATP-binding protein compare
SMc02228 -2.0 -7.7 acetyl-CoA acetyltransferase compare
SM_b20323 -2.0 -1.6 transcriptional regulator compare
SM_b20509 -2.0 -3.8 transcriptional regulator compare
SMc04296 -1.9 -1.9 cell division protein FtsZ compare
SMc02140 -1.9 -2.4 phosphate regulon transcriptional regulatory protein compare
SMc02363 -1.9 -3.5 cytochrome C-type biogenesis transmembrane protein compare
SMc01207 -1.9 -3.6 S-adenosylmethionine--tRNA ribosyltransferase-isomerase compare
SMc02713 -1.9 -2.9 RNA polymerase sigma-E factor (sigma-24) protein compare
SMc02909 -1.8 -2.8 transglycosylase transmembrane protein compare
SMc00709 -1.8 -5.1 hypothetical protein compare
SMc00189 -1.8 -4.9 cytochrome C1 protein compare
SMc00414 -1.8 -12.3 hypothetical protein compare
SM_b20392 -1.8 -6.7 transcriptional regulator NanR compare
SMc02112 -1.8 -7.6 hypothetical protein compare
SMa0955 -1.7 -2.6 GntR family transcriptional regulator compare
SMc03258 -1.7 -7.0 transcriptional regulator compare
SMc04260 -1.7 -10.5 transcriptional regulator compare
SMc02521 -1.7 -3.9 glycerol-3-phosphate regulon repressor transcription regulator protein compare
SMa0222 -1.7 -4.1 GntR family transcriptional regulator compare
SMc02582 -1.7 -4.3 hypothetical protein compare
SMc01852 -1.7 -9.3 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
SMc01946 -1.7 -9.7 leucine-specific binding protein compare
SMc02115 -1.7 -1.2 hypothetical protein compare
SMc01595 -1.6 -4.1 sensor histidine kinase transmembrane protein compare
SMc00091 -1.6 -9.1 sulfate adenylyltransferase compare
SMa1654 -1.6 -5.3 GntR family transcriptional regulator compare
SMc01845 -1.6 -2.8 transglycosylase transmembrane protein compare
SMc00092 -1.6 -9.8 phosphoadenosine phosphosulfate reductase compare
SMc01501 -1.6 -4.1 mannitol 2-dehydrogenase compare
SMc01441 -1.5 -4.5 membrane bound protease compare
SMc01800 -1.5 -1.3 cytochrome C oxidase assembly transmembrane protein compare
SMa1240 -1.5 -1.4 NapF ferredoxin component of periplasmic nitrate reductase compare
SMc00013 -1.5 -2.1 cytochrome C oxidase subunit III transmembrane protein compare
SMc02407 -1.5 -5.9 hypothetical protein compare
SMc03053 -1.5 -2.0 flagellar biosynthesis protein FliQ compare
SMc03100 -1.5 -1.3 hypothetical protein compare
SMc01505 -1.5 -2.2 hypothetical protein compare
SM_b21372 -1.5 -7.9 LacI family transcriptional regulator compare
SMc04243 -1.5 -6.5 high-affinity zinc uptake system membrane ABC transporter protein compare
SMc01440 -1.5 -6.5 hydrolase serine protease transmembrane protein compare
SMc03242 -1.4 -3.7 GTP-binding protein compare
SM_b21035 -1.4 -5.3 hypothetical protein compare
SMc01471 -1.4 -4.0 cytochrome C oxidase assembly factor transmembrane protein compare
SMc02853 -1.4 -5.2 hypothetical protein compare
SMc01126 -1.4 -9.0 malic enzyme compare
SMc01242 -1.4 -3.1 signal peptide protein compare
SMa0078 -1.4 -7.7 LacI family transcriptional regulator compare
SMc00321 -1.4 -6.8 tRNA pseudouridine synthase B compare
SMc01947 -1.4 -4.1 hypothetical protein compare
SMc01568 -1.4 -2.0 hypothetical protein compare
SMc02861 -1.4 -2.0 phosphate transporter compare
SM_b21102 -1.4 -7.6 transcriptional regulator compare
SMc00009 -1.4 -5.5 cytochrome C oxidase subunit II protein compare
SMc02850 -1.3 -3.0 DNA polymerase I compare
SMc02690 -1.3 -3.7 hypothetical protein compare
SMc02581 -1.3 -8.5 malate synthase G compare
SMc04330 -1.3 -2.3 trimethylamine methyltransferase compare
SMc03967 -1.3 -1.6 Holliday junction resolvase compare
SMc00188 -1.3 -6.4 cytochrome B transmembrane protein compare
SMc02689 -1.3 -8.4 aldehyde dehydrogenase compare
SMc02576 -1.3 -2.1 acetyltransferase compare


Specific Phenotypes

For 24 genes in this experiment

For carbon source L-Histidine in Sinorhizobium meliloti 1021

For carbon source L-Histidine across organisms