Experiment set1IT024 for Cupriavidus basilensis FW507-4G11

Compare to:

R2A with MreB Perturbing Compound A22 0.01 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
RR42_RS00715 +2.1 5.4 ferritin compare
RR42_RS18385 +2.0 7.7 hypothetical protein compare
RR42_RS04735 +1.8 3.0 hypothetical protein compare
RR42_RS17060 +1.7 13.9 histidine kinase compare
RR42_RS17055 +1.6 8.4 LuxR family transcriptional regulator compare
RR42_RS04895 +1.5 11.0 serine/threonine protein phosphatase compare
RR42_RS01630 +1.5 2.7 branched-chain amino acid ABC transporter ATP-binding protein compare
RR42_RS02045 +1.3 10.5 GTPase compare
RR42_RS02210 +1.2 1.4 succinate dehydrogenase compare
RR42_RS25640 +1.2 2.6 3-hydroxyisobutyrate dehydrogenase compare
RR42_RS06335 +1.2 2.2 cyclophilin compare
RR42_RS26540 +1.2 1.6 3-phosphoglycerate dehydrogenase compare
RR42_RS20310 +1.2 1.3 copper-binding protein compare
RR42_RS37045 +1.1 1.9 thiamine biosynthesis protein ApbE compare
RR42_RS34680 +1.1 1.8 short-chain dehydrogenase compare
RR42_RS05885 +1.1 6.7 hypothetical protein compare
RR42_RS16910 +1.1 1.7 histidine utilization protein HutD compare
RR42_RS15890 +1.1 6.6 heme biosynthesis protein HemY compare
RR42_RS13865 +1.1 1.3 hypothetical protein compare
RR42_RS15470 +1.1 2.0 biopolymer transporter ExbD compare
RR42_RS33815 +1.1 1.4 isochorismatase compare
RR42_RS06880 +1.1 2.0 hypothetical protein compare
RR42_RS10310 +1.1 1.8 NADPH:quinone reductase compare
RR42_RS06395 +1.1 7.1 TetR family transcriptional regulator compare
RR42_RS30570 +1.0 4.0 hypothetical protein compare
RR42_RS31330 +1.0 1.2 LysR family transcriptional regulator compare
RR42_RS03665 +1.0 2.4 translation initiation factor IF-1 compare
RR42_RS15460 +1.0 4.0 translocation protein TolB compare
RR42_RS36560 +1.0 3.7 ABC transporter substrate-binding protein compare
RR42_RS04955 +1.0 2.0 hypothetical protein compare
RR42_RS09290 +1.0 1.7 hypothetical protein compare
RR42_RS06630 +0.9 1.3 integration host factor subunit alpha compare
RR42_RS02085 +0.9 5.0 RNA polymerase subunit sigma-54 compare
RR42_RS27370 +0.9 3.4 zinc finger UBP-type protein compare
RR42_RS25160 +0.9 2.5 hypothetical protein compare
RR42_RS01970 +0.9 5.2 maleylacetoacetate isomerase compare
RR42_RS29610 +0.9 1.5 cytochrome C2 compare
RR42_RS15845 +0.9 2.4 biotin transporter BioY compare
RR42_RS35445 +0.9 2.2 ArsR family transcriptional regulator compare
RR42_RS13405 +0.9 6.6 diguanylate cyclase compare
RR42_RS23760 +0.9 1.3 tRNA-Asn compare
RR42_RS22590 +0.9 1.0 organic hydroperoxide resistance protein compare
RR42_RS15035 +0.9 4.5 ZIP zinc transporter compare
RR42_RS32035 +0.9 2.4 short-chain dehydrogenase compare
RR42_RS35295 +0.9 0.8 diguanylate cyclase compare
RR42_RS32805 +0.8 2.2 damage-inducible protein compare
RR42_RS14880 +0.8 1.5 hypothetical protein compare
RR42_RS34690 +0.8 2.0 permease compare
RR42_RS23485 +0.8 2.5 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
RR42_RS31505 +0.8 2.2 hypothetical protein compare
RR42_RS27280 +0.8 2.2 hypothetical protein compare
RR42_RS31020 +0.8 2.8 hypothetical protein compare
RR42_RS33650 +0.8 2.3 IclR family transcriptional regulator compare
RR42_RS20810 +0.8 1.4 hypothetical protein compare
RR42_RS27605 +0.8 3.7 hypothetical protein compare
RR42_RS21455 +0.8 1.6 transposase compare
RR42_RS15895 +0.8 3.7 uroporphyrinogen III methyltransferase compare
RR42_RS15700 +0.8 5.4 UDP-galactose-lipid carrier transferase compare
RR42_RS32505 +0.8 1.3 sulfonate ABC transporter ATP-binding protein compare
RR42_RS35110 +0.8 1.8 hypothetical protein compare
RR42_RS10195 +0.8 2.2 hypothetical protein compare
RR42_RS26555 +0.8 1.5 tRNA-Met compare
RR42_RS21765 +0.8 1.9 3-oxoacyl-ACP reductase compare
RR42_RS14790 +0.8 4.6 cobalamin biosynthesis protein CobD compare
RR42_RS26885 +0.8 3.0 peptidase M20 compare
RR42_RS04890 +0.8 3.3 ribonuclease PH compare
RR42_RS32460 +0.8 1.8 LysR family transcriptional regulator compare
RR42_RS27050 +0.8 2.7 transporter compare
RR42_RS03525 +0.8 1.9 type VI secretion system effector compare
RR42_RS17625 +0.8 2.7 damage-inducible protein CinA compare
RR42_RS15465 +0.7 2.4 TonB-dependent receptor compare
RR42_RS07240 +0.7 1.6 hypothetical protein compare
RR42_RS06315 +0.7 2.9 RNA methyltransferase compare
RR42_RS15455 +0.7 2.8 membrane protein compare
RR42_RS07155 +0.7 1.2 hypothetical protein compare
RR42_RS24790 +0.7 1.1 LysR family transcriptional regulator compare
RR42_RS15415 +0.7 2.2 membrane protein compare
RR42_RS06125 +0.7 2.5 phosphogluconate dehydratase compare
RR42_RS08210 +0.7 1.0 hypothetical protein compare
RR42_RS24520 +0.7 2.6 hypothetical protein compare
RR42_RS26170 +0.7 3.6 rod shape-determining protein MreB compare
RR42_RS32495 +0.7 1.5 shikimate kinase compare
RR42_RS07885 +0.7 2.9 chemotaxis protein CheY compare
RR42_RS02030 +0.7 1.4 membrane protein compare
RR42_RS18725 +0.7 1.0 hypothetical protein compare
RR42_RS19645 +0.7 1.7 DNA topoisomerase compare
RR42_RS18045 +0.7 2.7 peroxiredoxin compare
RR42_RS16685 +0.7 2.2 tRNA-Leu compare
RR42_RS09375 +0.7 0.9 taurine dioxygenase compare
RR42_RS31940 +0.7 1.7 2-nitropropane dioxygenase compare
RR42_RS33025 +0.7 2.7 hypothetical protein compare
RR42_RS32870 +0.7 1.2 stress responsive protein compare
RR42_RS09605 +0.7 2.0 hypothetical protein compare
RR42_RS09835 +0.7 1.7 chemotaxis protein compare
RR42_RS18310 +0.7 0.8 indole-3-glycerol-phosphate synthase compare
RR42_RS18380 +0.7 1.2 hypothetical protein compare
RR42_RS18425 +0.7 1.0 hypothetical protein compare
RR42_RS29020 +0.7 1.6 hypothetical protein compare
RR42_RS27915 +0.7 1.7 acyl-CoA synthetase compare
RR42_RS35630 +0.7 4.2 ArsR family transcriptional regulator compare
RR42_RS06345 +0.7 2.9 hypothetical protein compare
RR42_RS17495 +0.7 2.1 hypothetical protein compare
RR42_RS05125 +0.7 1.6 malonic semialdehyde reductase compare
RR42_RS31495 +0.7 0.9 Cro/Cl family transcriptional regulator compare
RR42_RS02250 +0.7 2.1 GntR family transcriptional regulator compare
RR42_RS34905 +0.7 2.0 enoyl-CoA hydratase compare
RR42_RS10845 +0.6 2.3 cupin compare
RR42_RS25645 +0.6 1.7 hypothetical protein compare
RR42_RS07125 +0.6 0.8 hypothetical protein compare
RR42_RS31240 +0.6 2.3 AMP-dependent synthetase compare
RR42_RS00600 +0.6 1.3 DeoR family transcriptional regulator compare
RR42_RS25225 +0.6 1.5 NAD(P) transhydrogenase compare
RR42_RS07860 +0.6 1.5 acetyltransferase compare
RR42_RS35840 +0.6 2.5 chemotaxis protein compare
RR42_RS15370 +0.6 2.6 MarR family transcriptional regulator compare
RR42_RS06260 +0.6 4.4 MBL fold metallo-hydrolase compare
RR42_RS32185 +0.6 1.9 hypothetical protein compare
RR42_RS15695 +0.6 2.7 glycosyl transferase compare
RR42_RS20575 +0.6 1.5 hypothetical protein compare
RR42_RS12085 +0.6 1.2 glyoxalase compare
RR42_RS32850 +0.6 1.2 universal stress protein UspA compare
RR42_RS04430 +0.6 4.8 phosphoglycolate phosphatase compare
RR42_RS07870 +0.6 2.5 alkyl hydroperoxide reductase compare
RR42_RS03115 +0.6 3.8 ligase compare
RR42_RS03910 +0.6 1.3 (2Fe-2S)-binding protein compare
RR42_RS36610 +0.6 1.7 host specificity protein compare
RR42_RS23370 +0.6 2.0 flagellar motor switch protein FliN compare
RR42_RS04420 +0.6 1.8 required for efflux of an amino acid polymer (from data) compare
RR42_RS07185 +0.6 2.2 hypothetical protein compare
RR42_RS02960 +0.6 2.2 triphosphoribosyl-dephospho-CoA synthase compare
RR42_RS13515 +0.6 2.1 membrane protein compare
RR42_RS18390 +0.6 2.3 hypothetical protein compare
RR42_RS11225 +0.6 1.2 peptide ABC transporter permease compare
RR42_RS29725 +0.6 3.0 hypothetical protein compare
RR42_RS25765 +0.6 1.7 hypothetical protein compare
RR42_RS24680 +0.6 2.7 hypothetical protein compare
RR42_RS06065 +0.6 1.5 hypothetical protein compare
RR42_RS05165 +0.6 1.5 GntR family transcriptional regulator compare
RR42_RS27180 +0.6 2.6 alkylhydroperoxidase compare
RR42_RS15015 +0.6 0.7 exodeoxyribonuclease VII small subunit compare
RR42_RS26330 +0.6 2.1 hypothetical protein compare
RR42_RS37135 +0.6 1.0 cold-shock protein compare
RR42_RS02465 +0.6 3.0 membrane protein compare
RR42_RS00490 +0.6 1.9 potassium-transporting ATPase subunit C compare
RR42_RS33055 +0.6 3.3 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
RR42_RS06700 +0.6 2.0 hypothetical protein compare
RR42_RS28515 +0.6 2.5 LysR family transcriptional regulator compare
RR42_RS10980 +0.6 1.9 hydroxypyruvate isomerase compare
RR42_RS26925 +0.6 0.6 membrane protein compare
RR42_RS20320 +0.6 1.5 ornithine cyclodeaminase compare
RR42_RS02320 +0.6 2.3 trehalose phosphatase compare
RR42_RS23035 +0.6 1.4 sporulation protein compare
RR42_RS17470 +0.6 2.5 NUDIX hydrolase compare
RR42_RS13190 +0.6 2.7 outer membrane metallopeptidase lipoprotein nlpD compare
RR42_RS18930 +0.6 2.3 BolA family transcriptional regulator compare
RR42_RS16535 +0.6 0.9 hypothetical protein compare
RR42_RS01605 +0.6 1.6 hydrolase compare
RR42_RS29380 +0.6 2.6 arsenite oxidase small subunit compare
RR42_RS34605 +0.6 1.2 hypothetical protein compare
RR42_RS20690 +0.6 2.4 membrane protein compare
RR42_RS14885 +0.6 0.9 DNA-directed RNA polymerase sigma-70 factor compare
RR42_RS32935 +0.6 1.7 CopG family transcriptional regulator compare
RR42_RS22070 +0.6 1.8 type IV secretion protein Rhs compare
RR42_RS12130 +0.6 0.7 hypothetical protein compare
RR42_RS06275 +0.6 1.9 peptidylprolyl isomerase compare
RR42_RS13945 +0.6 1.9 hypothetical protein compare
RR42_RS04410 +0.6 3.7 cyanophycin synthetase compare
RR42_RS24180 +0.5 2.2 3-isopropylmalate dehydratase compare
RR42_RS32385 +0.5 2.4 citrate synthase compare
RR42_RS10010 +0.5 0.8 3-oxoadipate CoA-transferase compare
RR42_RS25820 +0.5 2.2 DNA polymerase III subunit epsilon compare
RR42_RS16155 +0.5 2.4 RNA-binding protein compare
RR42_RS16310 +0.5 1.0 hypothetical protein compare
RR42_RS35240 +0.5 1.3 acyl-CoA dehydrogenase compare
RR42_RS33385 +0.5 3.2 XpsR family transcriptional regulator compare
RR42_RS13800 +0.5 2.4 formyltetrahydrofolate deformylase compare
RR42_RS06325 +0.5 0.5 serine O-acetyltransferase compare
RR42_RS12020 +0.5 1.6 GCN5 family acetyltransferase compare
RR42_RS10240 +0.5 1.6 hypothetical protein compare
RR42_RS28155 +0.5 0.7 hypothetical protein compare
RR42_RS31285 +0.5 1.0 XRE family transcriptional regulator compare
RR42_RS08860 +0.5 1.4 radical SAM protein compare
RR42_RS19745 +0.5 1.6 RlpA-like protein compare
RR42_RS26645 +0.5 2.8 succinate-semialdehyde dehydrogenase compare
RR42_RS03635 +0.5 1.7 trypsin-like serine protease compare
RR42_RS27550 +0.5 0.6 hypothetical protein compare
RR42_RS33910 +0.5 1.2 LysR family transcriptional regulator compare
RR42_RS10270 +0.5 2.0 hypothetical protein compare
RR42_RS28705 +0.5 1.8 hypothetical protein compare
RR42_RS23460 +0.5 1.2 alpha/beta hydrolase compare
RR42_RS09360 +0.5 1.3 alpha/beta hydrolase compare
RR42_RS02110 +0.5 4.0 potassium transporter compare
RR42_RS25660 +0.5 1.6 cytochrome C biogenesis protein compare
RR42_RS23575 +0.5 2.3 flagellar hook-basal body protein FliE compare
RR42_RS12680 +0.5 2.4 hypothetical protein compare
RR42_RS32645 +0.5 0.7 2-keto-4-pentenoate hydratase compare
RR42_RS02165 +0.5 1.3 LysR family transcriptional regulator compare
RR42_RS28615 +0.5 1.0 ABC transporter substrate-binding protein compare
RR42_RS31985 +0.5 1.6 short-chain dehydrogenase compare
RR42_RS17775 +0.5 2.3 Fe(II)-dependent oxygenase compare


Specific Phenotypes

None in this experiment

For Cupriavidus basilensis FW507-4G11 in stress experiments

For stress MreB Perturbing Compound A22 across organisms