Experiment set1IT024 for Burkholderia phytofirmans PsJN

Compare to:

L-Phenylalanine carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS16270 -8.0 -5.5 phosphoglycerate kinase compare
BPHYT_RS17680 -7.8 -5.4 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS18320 -7.7 -9.1 orotate phosphoribosyltransferase compare
BPHYT_RS17685 -7.6 -7.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS03535 -7.6 -5.3 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS09500 -7.5 -5.2 glucose-6-phosphate isomerase compare
BPHYT_RS16245 -7.4 -5.1 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS18260 -7.2 -5.0 phenylacetic acid degradation protein compare
BPHYT_RS17395 -7.0 -2.8 anthranilate synthase subunit II compare
BPHYT_RS17690 -6.9 -10.6 imidazole glycerol phosphate synthase compare
BPHYT_RS18265 -6.9 -4.0 phenylacetate-CoA oxygenase subunit PaaJ compare
BPHYT_RS02610 -6.8 -5.9 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS33915 -6.7 -8.0 isopropylmalate isomerase compare
BPHYT_RS33875 -6.7 -8.8 tryptophan synthase subunit alpha compare
BPHYT_RS01920 -6.7 -12.0 AsnC family transcriptional regulator conserved
BPHYT_RS06555 -6.7 -10.2 ketol-acid reductoisomerase compare
BPHYT_RS33880 -6.5 -8.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS03150 -6.4 -14.4 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS18270 -6.4 -8.8 phenylacetic acid degradation protein compare
BPHYT_RS06545 -6.4 -11.5 acetolactate synthase compare
BPHYT_RS17335 -6.3 -11.4 2,3-dehydroadipyl-CoA hydratase / enoyl-CoA hydratase (EC 4.2.1.17) (from data) conserved
BPHYT_RS15920 -6.3 -9.7 argininosuccinate synthase compare
BPHYT_RS14895 -6.3 -4.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS33865 -6.3 -9.6 tryptophan synthase alpha chain compare
BPHYT_RS16835 -6.3 -7.5 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS17340 -6.3 -9.6 3-oxo-5,6-didehydrosuberyl-CoA semialdehyde dehydrogenase PaaZ (EC:1.2.1.91) (from data) conserved
BPHYT_RS15915 -6.3 -7.5 ornithine carbamoyltransferase compare
BPHYT_RS33900 -6.3 -12.0 3-isopropylmalate dehydrogenase compare
BPHYT_RS08955 -6.3 -4.3 homoserine dehydrogenase compare
BPHYT_RS33835 -6.2 -10.4 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS02590 -6.1 -10.2 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS18250 -6.0 -8.3 phenylacetate-CoA oxygenase subunit PaaA compare
BPHYT_RS17670 -6.0 -5.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS13705 -6.0 -4.1 chorismate synthase compare
BPHYT_RS33840 -6.0 -9.9 amidophosphoribosyltransferase compare
BPHYT_RS17890 -5.9 -4.0 shikimate kinase compare
BPHYT_RS12985 -5.9 -4.1 amino acid acetyltransferase compare
BPHYT_RS14845 -5.9 -4.0 cysteine synthase compare
BPHYT_RS06900 -5.8 -6.9 aspartate aminotransferase compare
BPHYT_RS13220 -5.8 -6.1 phosphomethylpyrimidine synthase compare
BPHYT_RS14855 -5.7 -3.7 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS17715 -5.7 -8.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS14190 -5.6 -10.1 carbamoyl phosphate synthase large subunit compare
BPHYT_RS09515 -5.5 -5.4 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS18255 -5.5 -3.8 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS14915 -5.4 -6.2 phosphoserine aminotransferase compare
BPHYT_RS33920 -5.4 -9.6 type II citrate synthase compare
BPHYT_RS12055 -5.4 -15.5 phosphoenolpyruvate synthase compare
BPHYT_RS08850 -5.3 -3.6 transcriptional regulator compare
BPHYT_RS17400 -5.2 -6.2 anthranilate phosphoribosyltransferase compare
BPHYT_RS12845 -5.2 -16.9 ATPase compare
BPHYT_RS17390 -5.2 -11.6 anthranilate synthase subunit I compare
BPHYT_RS04725 -5.2 -11.1 sulfite reductase compare
BPHYT_RS06610 -5.1 -2.8 triosephosphate isomerase compare
BPHYT_RS02015 -5.0 -11.5 phenylpyruvate ferredoxin oxidoreductase (EC 1.2.7.8) (from data) conserved
BPHYT_RS17405 -5.0 -2.0 indole-3-glycerol phosphate synthase compare
BPHYT_RS01595 -5.0 -9.1 homoserine O-acetyltransferase compare
BPHYT_RS17675 -5.0 -3.4 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS04340 -5.0 -4.8 hypothetical protein compare
BPHYT_RS03640 -4.9 -3.4 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS33645 -4.9 -6.7 homoserine kinase compare
BPHYT_RS08960 -4.8 -3.3 threonine synthase compare
BPHYT_RS10100 -4.8 -5.3 dihydroxy-acid dehydratase compare
BPHYT_RS06685 -4.6 -3.2 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS16255 -4.5 -4.4 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS06405 -4.5 -7.3 phosphoribosylamine--glycine ligase compare
BPHYT_RS12530 -4.5 -4.1 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS17885 -4.4 -8.1 3-dehydroquinate synthase compare
BPHYT_RS16340 -4.4 -8.3 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS16675 -4.3 -3.0 dihydroorotase compare
BPHYT_RS16840 -4.3 -2.9 transketolase compare
BPHYT_RS16905 -3.9 -4.6 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS04740 -3.9 -9.0 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS17700 -3.9 -6.0 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS16345 -3.8 -5.9 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS04965 -3.8 -9.8 ATP-binding protein compare
BPHYT_RS02570 -3.7 -5.8 phosphocarrier protein HPr compare
BPHYT_RS04955 -3.7 -3.6 methionyl-tRNA synthetase compare
BPHYT_RS15620 -3.7 -5.2 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS08565 -3.7 -1.9 dihydroorotate dehydrogenase compare
BPHYT_RS04370 -3.6 -3.1 glycosyl transferase compare
BPHYT_RS12285 -3.3 -8.7 isocitrate lyase compare
BPHYT_RS12815 -3.3 -11.3 IclR family transcriptional regulator compare
BPHYT_RS17095 -3.0 -3.6 proline--tRNA ligase compare
BPHYT_RS04720 -3.0 -4.0 transcriptional regulator compare
BPHYT_RS06175 -3.0 -6.8 LPS biosynthesis compare
BPHYT_RS18705 -2.9 -2.8 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS14195 -2.8 -4.2 carbamoyl phosphate synthase small subunit compare
BPHYT_RS23840 -2.8 -4.4 methyltransferase compare
BPHYT_RS04385 -2.8 -4.9 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS04350 -2.8 -13.5 membrane protein compare
BPHYT_RS01485 -2.7 -1.8 histidine kinase compare
BPHYT_RS03495 -2.7 -6.1 hypothetical protein compare
BPHYT_RS06190 -2.6 -6.4 heptosyltransferase compare
BPHYT_RS03725 -2.5 -2.7 serine hydroxymethyltransferase compare
BPHYT_RS04730 -2.5 -2.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS04285 -2.5 -3.0 rhamnosyltransferase compare
BPHYT_RS03655 -2.5 -1.8 membrane protein compare
BPHYT_RS04920 -2.4 -1.9 aspartate 1-decarboxylase compare
BPHYT_RS04365 -2.3 -9.1 membrane protein compare
BPHYT_RS08125 -2.2 -12.1 ATPase compare
BPHYT_RS04745 -2.2 -3.1 sulfate adenylyltransferase compare
BPHYT_RS03625 -2.1 -8.9 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS17380 -2.1 -10.7 ribulose-phosphate 3-epimerase compare
BPHYT_RS13545 -2.1 -9.6 3-hydroxyadipyl-CoA dehydrogenase (EC 1.1.1.35) (from data) conserved
BPHYT_RS22455 -2.0 -1.9 phosphonate ABC transporter substrate-binding protein compare
BPHYT_RS09145 -2.0 -8.9 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS24500 -1.9 -2.4 histidine kinase compare
BPHYT_RS14755 -1.9 -3.8 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS17520 -1.9 -5.7 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS17345 -1.9 -6.7 bifunctional thiolase PaaJ: 3-oxo-5,6-didehydrosuberyl-CoA thiolase (EC 2.3.1.223); 3-oxoadipyl-CoA thiolase (EC 2.3.1.174) (from data) conserved
BPHYT_RS08950 -1.7 -4.1 aminotransferase compare
BPHYT_RS33580 -1.7 -4.6 geranyltranstransferase compare
BPHYT_RS04290 -1.6 -2.7 glycosyl transferase family 2 compare
BPHYT_RS02865 -1.5 -3.2 hypothetical protein compare
BPHYT_RS16065 -1.5 -1.4 LacI family transcriptional regulator compare
BPHYT_RS27890 -1.5 -1.4 hypothetical protein compare
BPHYT_RS33905 -1.5 -0.8 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS06410 -1.5 -2.5 transcriptional regulator compare
BPHYT_RS04820 -1.5 -5.5 LysR family transcriptional regulator compare
BPHYT_RS36275 -1.5 -2.5 hypothetical protein compare
BPHYT_RS03400 -1.4 -1.0 ATP-dependent DNA helicase RecG compare
BPHYT_RS12465 -1.4 -3.1 inositol monophosphatase compare
BPHYT_RS16250 -1.4 -1.4 N5-carboxyaminoimidazole ribonucleotide mutase compare
BPHYT_RS17530 -1.4 -6.7 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS01590 -1.3 -5.9 methionine biosynthesis protein MetW compare
BPHYT_RS15865 -1.3 -2.8 exodeoxyribonuclease VII large subunit compare
BPHYT_RS06760 -1.3 -3.0 3-hydroxyacyl-CoA dehydrogenase compare
BPHYT_RS13645 -1.3 -10.6 threonine--tRNA ligase compare
BPHYT_RS06400 -1.3 -4.3 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS20095 -1.3 -1.1 transcriptional regulator compare
BPHYT_RS15615 -1.3 -3.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS30365 -1.3 -1.2 beta-lactamase compare
BPHYT_RS13540 -1.3 -7.7 LysR family transcriptional regulator compare
BPHYT_RS35885 -1.2 -4.7 hypothetical protein compare
BPHYT_RS14905 -1.2 -5.4 Aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
BPHYT_RS17725 -1.2 -5.2 BolA family transcriptional regulator compare
BPHYT_RS15415 -1.2 -7.9 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS17100 -1.2 -5.0 RNA pyrophosphohydrolase compare
BPHYT_RS26660 -1.2 -2.8 precorrin-4 C11-methyltransferase compare
BPHYT_RS08665 -1.2 -1.4 hypothetical protein compare
BPHYT_RS16180 -1.1 -1.3 TetR family transcriptional regulator compare
BPHYT_RS08945 -1.1 -7.7 hypothetical protein compare
BPHYT_RS09155 -1.0 -3.6 3-ketoacyl-ACP reductase compare
BPHYT_RS08245 -1.0 -4.4 anti-sigma factor compare
BPHYT_RS13200 -1.0 -1.5 molybdopterin binding oxidoreductase compare
BPHYT_RS09465 -1.0 -1.0 transcriptional regulator compare
BPHYT_RS09825 -1.0 -1.6 Fe-S protein compare
BPHYT_RS16975 -1.0 -3.1 shikimate 5-dehydrogenase compare
BPHYT_RS22500 -1.0 -2.7 transcriptional regulator compare
BPHYT_RS12060 -1.0 -1.7 hypothetical protein compare
BPHYT_RS13605 -1.0 -0.9 tRNA-Pro compare
BPHYT_RS02165 -1.0 -6.6 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
BPHYT_RS21860 -1.0 -1.4 hypothetical protein compare
BPHYT_RS11540 -0.9 -2.8 ureidoglycolate hydrolase compare
BPHYT_RS14920 -0.9 -1.3 hypothetical protein compare
BPHYT_RS21330 -0.9 -1.4 hypothetical protein compare
BPHYT_RS33885 -0.9 -6.8 tRNA pseudouridine synthase A compare
BPHYT_RS15305 -0.9 -3.7 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
BPHYT_RS34780 -0.9 -3.5 phytoene synthase compare
BPHYT_RS14660 -0.9 -1.3 hypothetical protein compare
BPHYT_RS17035 -0.9 -1.8 sugar kinase compare
BPHYT_RS29015 -0.9 -1.7 RND transporter compare
BPHYT_RS20025 -0.9 -0.7 crotonase compare
BPHYT_RS17525 -0.9 -1.6 glutaredoxin compare
BPHYT_RS26675 -0.9 -1.9 precorrin-6Y C5,15-methyltransferase compare
BPHYT_RS28575 -0.9 -1.1 transcriptional regulator compare
BPHYT_RS31890 -0.9 -1.4 transposase compare
BPHYT_RS12725 -0.9 -6.9 regulator compare
BPHYT_RS28350 -0.9 -1.8 fatty acid desaturase compare
BPHYT_RS06985 -0.9 -3.3 fumarate hydratase compare
BPHYT_RS08235 -0.9 -1.1 nucleoprotein, Hfg, host factor I compare
BPHYT_RS05960 -0.9 -2.6 endoribonuclease L-PSP compare
BPHYT_RS19325 -0.9 -2.2 glycine cleavage system H protein compare
BPHYT_RS21485 -0.9 -1.1 hypothetical protein compare
BPHYT_RS21620 -0.9 -1.3 GCN5 family acetyltransferase compare
BPHYT_RS17920 -0.9 -1.3 protein CyaY compare
BPHYT_RS05255 -0.8 -1.2 phage abortive infection protein compare
BPHYT_RS05705 -0.8 -1.1 hypothetical protein compare
BPHYT_RS02150 -0.8 -2.3 biotin synthase compare
BPHYT_RS29085 -0.8 -1.9 LysR family transcriptional regulator compare
BPHYT_RS04335 -0.8 -1.6 membrane protein compare
BPHYT_RS08765 -0.8 -0.9 ABC transporter ATP-binding protein compare
BPHYT_RS20840 -0.8 -1.0 beta-lactamase compare
BPHYT_RS33870 -0.8 -3.1 DNA methylase N-4 compare
BPHYT_RS15950 -0.8 -4.4 tyrosine recombinase XerD compare
BPHYT_RS30285 -0.8 -1.7 succinate-semialdehyde dehydrogenase compare
BPHYT_RS23230 -0.8 -0.4 histidine kinase compare
BPHYT_RS10720 -0.8 -0.9 hypothetical protein compare
BPHYT_RS33150 -0.8 -0.9 beta-lactamase compare
BPHYT_RS12785 -0.8 -2.6 Rrf2 family transcriptional regulator compare
BPHYT_RS22930 -0.8 -1.4 type II secretion system protein compare
BPHYT_RS28705 -0.8 -1.2 IclR family transcriptional regulator compare
BPHYT_RS06910 -0.8 -2.6 membrane protein compare
BPHYT_RS18765 -0.8 -4.7 flagellar biosynthesis protein FliS compare
BPHYT_RS06600 -0.8 -1.4 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS28910 -0.8 -1.5 diguanylate phosphodiesterase compare
BPHYT_RS13935 -0.8 -1.5 mannosyltransferase compare
BPHYT_RS12990 -0.8 -2.0 iron transporter compare
BPHYT_RS14865 -0.7 -2.1 UDP-glucose 6-dehydrogenase compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source L-Phenylalanine in Burkholderia phytofirmans PsJN

For carbon source L-Phenylalanine across organisms