Experiment set1IT023 for Sinorhizobium meliloti 1021

Compare to:

D-Trehalose dihydrate carbon source

200 most important genes:

  gene name fitness t score description  
SMc02572 -10.2 -6.5 imidazole glycerol phosphate synthase subunit HisH compare
SMc02766 -9.0 -6.2 tryptophan synthase subunit beta compare
SMc01726 -8.6 -6.0 acetylglutamate kinase compare
SMc00236 -8.0 -5.5 Indole-3-glycerol phosphate synthase compare
SMc00614 -7.9 -5.5 phosphoribosylglycinamide formyltransferase compare
SMc00917 -7.9 -5.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc00495 -7.8 -5.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc02569 -7.8 -5.4 imidazole glycerol phosphate synthase subunit HisF compare
SMc01801 -7.7 -5.1 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc02899 -7.7 -10.5 prephenate dehydratase compare
SMc02767 -7.7 -9.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc01494 -7.7 -11.7 phosphoserine phosphatase compare
SMc01843 -7.6 -10.4 5,10-methylenetetrahydrofolate reductase compare
SMc04405 -7.5 -9.0 3-isopropylmalate dehydrogenase compare
SMc00235 -7.4 -7.2 anthranilate phosphoribosyltransferase compare
SMc00640 -7.4 -7.2 phosphoserine aminotransferase compare
SMc03797 -7.4 -11.3 homoserine O-succinyltransferase compare
SMc02725 -7.3 -11.2 anthranilate synthase compare
SMc02137 -7.1 -4.9 ornithine carbamoyltransferase compare
SMc04002 -7.1 -9.7 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
SMc04028 -7.0 -13.5 glutamate synthase compare
SMc00993 -7.0 -8.3 phosphoribosylamine--glycine ligase compare
SMc02245 -6.9 -6.7 dihydroorotate dehydrogenase 2 compare
SMc00918 -6.8 -9.4 ATP phosphoribosyltransferase regulatory subunit compare
SMc01361 -6.8 -4.7 dihydroorotase compare
SMc00494 -6.7 -2.6 phosphoribosylformylglycinamidine synthase subunit PurS compare
SMc02717 -6.7 -12.1 2-isopropylmalate synthase compare
SMc03112 -6.7 -15.6 B12-dependent methionine synthase compare
SM_b21176 -6.7 -4.6 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc02765 -6.7 -12.8 tryptophan synthase subunit alpha compare
SMc01054 -6.6 -5.7 required for sulfate utilization, putative electron source for sulfite reductase CysI (from data) compare
SMa1635 -6.5 -2.5 hypothetical protein compare
SMc02217 -6.5 -7.7 O-succinylhomoserine sulfhydrylase compare
SMc03070 -6.5 -7.7 glucose-6-phosphate 1-dehydrogenase compare
SMc01431 -6.5 -13.8 acetolactate synthase 3 catalytic subunit compare
SMc00412 -6.4 -4.5 orotidine 5'-phosphate decarboxylase compare
SMc00293 -6.4 -13.7 homoserine dehydrogenase compare
SMc00554 -6.4 -8.7 amidophosphoribosyltransferase compare
SMc02570 -6.2 -8.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc01360 -6.2 -4.3 aspartate carbamoyltransferase catalytic subunit compare
SMc03895 -6.2 -18.3 pyruvate carboxylase compare
SMc00493 -6.1 -8.3 phosphoribosylformylglycinamidine synthase I compare
SMc02166 -6.1 -12.6 dihydroorotase compare
SMc04045 -6.1 -9.3 dihydroxy-acid dehydratase compare
SMc03777 -6.1 -8.3 gamma-glutamyl phosphate reductase compare
SMc04026 -6.1 -8.6 glutamate synthase compare
SMc00334 -6.0 -3.6 cytidylate kinase compare
SMc00488 -5.9 -15.8 phosphoribosylformylglycinamidine synthase II compare
SMc01004 -5.9 -8.7 phosphoribosyl-AMP cyclohydrolase compare
SMc02123 -5.9 -4.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
SMc03823 -5.8 -10.2 isopropylmalate isomerase large subunit compare
SMc02165 -5.8 -8.8 orotate phosphoribosyltransferase compare
SMc02755 -5.7 -6.8 S-adenosyl-L-homocysteine hydrolase compare
SMc00615 -5.7 -8.3 phosphoribosylaminoimidazole synthetase compare
SMc03229 -5.5 -3.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc04088 -5.4 -8.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SMc03826 -5.4 -5.2 argininosuccinate synthase compare
SMc03979 -5.3 -3.6 glyceraldehyde-3-phosphate dehydrogenase compare
SMc01880 -5.1 -3.5 pantoate--beta-alanine ligase compare
SM_b20329 -5.1 -9.5 required for glucoside 3-dehydrogenase activity on raffinose or trehalose (thuA) (EC 1.1.99.13) (from data) compare
SMc02124 -5.1 -17.5 nitrite reductase compare
SM_b20330 -5.0 -6.7 glucoside 3-dehydrogenase; active on raffinose or trehalose (thuB) (EC 1.1.99.13) (from data) compare
SMc03763 -4.9 -3.4 cytosine-specific methyltransferase compare
SMc03978 -4.9 -3.4 transketolase compare
SMc02307 -4.8 -9.3 histidinol dehydrogenase compare
SMc01215 -4.8 -3.3 carbamoyl phosphate synthase large subunit compare
SMc01569 -4.8 -2.5 carbamoyl phosphate synthase small subunit compare
SMc00711 -4.7 -4.7 cyclohexadienyl dehydrogenase compare
SMc02574 -4.7 -7.7 imidazoleglycerol-phosphate dehydratase compare
SM_b21177 -4.6 -7.2 phosphate uptake ABC transporter ATP-binding protein compare
SMc03981 -4.6 -5.4 phosphoglycerate kinase compare
SMc03776 -4.5 -4.2 gamma-glutamyl kinase compare
SMc04001 -4.5 -1.7 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SMc01770 -4.5 -2.0 serine hydroxymethyltransferase compare
SMc00017 -4.3 -2.3 homoserine kinase compare
SMc02246 -4.2 -1.6 hypothetical protein compare
SM_b21174 -4.2 -4.1 phosphate uptake ABC transporter permease compare
SMc03795 -4.2 -2.2 isopropylmalate isomerase small subunit compare
SMc02425 -4.1 -6.3 transcriptional regulator compare
SMc00876 -4.0 -6.8 ATP-binding MRP protein compare
SMc00294 -4.0 -11.5 aminotransferase compare
SMc00090 -4.0 -13.2 sulfate adenylyltransferase compare
SMc02835 -4.0 -7.9 glucokinase compare
SM_b21175 -3.9 -4.7 phosphate uptake ABC transporter permease compare
SMc00131 -3.9 -14.2 transcriptional regulator compare
SMc03924 -3.9 -10.6 glycogen synthase compare
SMc00092 -3.7 -13.6 phosphoadenosine phosphosulfate reductase compare
SMc00963 -3.7 -3.7 hypothetical protein compare
SMc00091 -3.6 -11.7 sulfate adenylyltransferase compare
SMc01881 -3.6 -4.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc02138 -3.6 -6.0 acetylornithine transaminase compare
SM_b20327 -3.6 -9.9 ABC transporter for D-trehalose/D-maltose/sucrose, permease component 2 (ThuG) (from data) compare
SMc00641 -3.5 -4.7 D-3-phosphoglycerate dehydrogenase compare
SMc02983 -3.5 -9.3 ornithine, DAP, or arginine decarboxylase compare
SMc03068 -3.5 -11.9 phosphogluconate dehydratase compare
SMc01206 -3.4 -3.1 queuine tRNA-ribosyltransferase compare
SM_b20328 -3.4 -14.7 ABC transporter for D-trehalose/D-maltose/sucrose, ATPase component (ThuK) (from data) compare
SMc03063 -3.4 -17.1 ABC transporter for D-maltose/D-trehalose/sucrose, permease component 2 (AglG) (from data) compare
SMc04346 -3.3 -3.6 ketol-acid reductoisomerase compare
SMc01430 -3.2 -4.0 acetolactate synthase 3 regulatory subunit compare
SMc01053 -3.2 -5.2 siroheme synthase compare
SMc02707 -3.2 -5.9 hypothetical protein compare
SMc03069 -3.1 -3.4 6-phosphogluconolactonase compare
SMc04005 -3.0 -7.8 pyruvate kinase compare
SM_b20325 -2.9 -11.4 ABC transporter for D-trehalose/D-maltose/sucrose, substrate-binding component (ThuE) (from data) compare
SMc01124 -2.8 -8.0 PII uridylyl-transferase compare
SMc03061 -2.8 -13.0 ABC transporter for D-maltose/D-trehalose/sucrose, substrate-binding component (AglE) (from data) compare
SMc01578 -2.8 -11.0 aspartate aminotransferase compare
SMc03065 -2.6 -10.3 ABC transporter for D-maltose/D-trehalose/sucrose, ATPase component (AglK) (from data) compare
SM_b20326 -2.6 -7.2 ABC transporter for D-trehalose/D-maltose/sucrose, permease component 1 (ThuF) (from data) conserved
SMc01440 -2.6 -5.2 hydrolase serine protease transmembrane protein compare
SMc00414 -2.5 -11.0 hypothetical protein compare
SMc03062 -2.5 -6.7 ABC transporter for D-maltose/D-trehalose/sucrose, permease component 1 (AglF) (from data) compare
SMc02435 -2.4 -3.6 methyltransferase compare
SMc02055 -2.4 -2.4 phytoene synthase compare
SMc00302 -2.4 -3.7 hypothetical protein compare
SMc01842 -2.3 -2.6 methyltransferase transcription regulator protein compare
SMc00619 -2.2 -2.7 hypothetical protein compare
SMc00815 -2.1 -2.2 inosine 5'-monophosphate dehydrogenase compare
SMc02753 -2.1 -2.1 PTS system transporter subunit IIA compare
SMc01207 -2.0 -3.4 S-adenosylmethionine--tRNA ribosyltransferase-isomerase compare
SMc01441 -2.0 -6.1 membrane bound protease compare
SMc02172 -1.9 -10.3 transcriptional regulator compare
SMc02909 -1.9 -2.9 transglycosylase transmembrane protein compare
SMc02640 -1.9 -6.0 UDP-glucuronic acid epimerase compare
SMc02058 -1.9 -4.2 YAJC protein compare
SMc00451 -1.9 -8.9 processing protease compare
SMc01028 -1.8 -11.2 phosphopyruvate hydratase compare
SMc02685 -1.8 -3.6 hypothetical protein compare
SMc04296 -1.7 -1.8 cell division protein FtsZ compare
SMc00709 -1.7 -4.8 hypothetical protein compare
SMc01852 -1.7 -8.8 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
SMc01568 -1.6 -2.1 hypothetical protein compare
SMc00982 -1.6 -6.9 dioxygenase compare
SMc02838 -1.6 -4.0 phosphoglyceromutase compare
SMc02434 -1.6 -3.7 hypothetical protein compare
SMc02641 -1.6 -5.1 UDP-glucose 6-dehydrogenase compare
SMa0789 -1.4 -4.4 GntR family transcriptional regulator compare
SMc00726 -1.4 -1.0 thiol:disulfide interchange redox-active center transmembrane protein compare
SMc01043 -1.3 -7.4 nitrogen assimilation regulatory protein compare
SMc00295 -1.3 -1.6 hypothetical protein compare
SMc02683 -1.3 -2.6 hypothetical protein compare
SMc04213 -1.3 -2.0 diacylglycerol kinase compare
SMc01850 -1.3 -3.0 hypothetical protein compare
SMc03153 -1.3 -2.0 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
SMc04000 -1.3 -1.0 hypothetical protein compare
SMc02861 -1.2 -2.7 phosphate transporter compare
SM_b21181 -1.2 -5.1 glutaryl-CoA dehydrogenase compare
SMc04224 -1.2 -0.8 hypothetical protein compare
SMa2020 -1.2 -5.2 Transcriptional regulator compare
SMc02724 -1.2 -2.1 hypothetical protein compare
SMc01939 -1.2 -1.4 urease subunit beta compare
SMa2215 -1.2 -3.6 GntR family transcriptional regulator compare
SMc01368 -1.1 -3.2 transport transmembrane protein compare
SMc00838 -1.1 -5.1 hypothetical protein compare
SMc02115 -1.1 -0.9 hypothetical protein compare
SMc03140 -1.1 -5.4 transcriptional regulator compare
SMc02833 -1.1 -1.8 penicillin-insensitive murein endopeptidase compare
SMc04246 -1.1 -1.5 transmembrane signal peptide protein compare
SMc02102 -1.1 -2.8 hypothetical protein compare
SMc03993 -1.1 -2.7 hypothetical protein compare
SMc02373 -1.1 -1.4 hypothetical protein compare
SMc01147 -1.1 -2.8 coproporphyrinogen III oxidase compare
SMc00622 -1.0 -3.9 ribonuclease D protein compare
SMc01208 -1.0 -3.1 peptidyl-prolyl cis-trans isomerase B protein compare
SM_b20773 -1.0 -2.9 GntR family transcriptional regulator compare
SM_b21132 -1.0 -3.2 sulfate ABC transporter permease compare
SMc02407 -1.0 -4.3 hypothetical protein compare
SMc00981 -1.0 -5.0 ferredoxin protein compare
SM_b20711 -1.0 -1.5 hypothetical protein compare
SMc02778 -1.0 -1.1 hydroxyacid aldolase compare
SMc00088 -1.0 -1.6 hypothetical protein compare
SMc03980 -0.9 -3.0 hypothetical protein compare
SMc03862 -0.9 -2.6 hypothetical protein compare
SMc01845 -0.9 -1.7 transglycosylase transmembrane protein compare
SMc02227 -0.9 -4.7 fatty oxidation complex enoyl-COA hydratase/3-hydroxyacyl-COA dehydrogenase/3-hydroxybutyryl-COA epimerase compare
SMc04330 -0.9 -2.3 trimethylamine methyltransferase compare
SMc00761 -0.9 -5.1 oxidoreductase compare
SMc00579 -0.9 -2.0 dimethyladenosine transferase compare
SMc02229 -0.9 -6.1 acyl-CoA dehydrogenase compare
SMc02228 -0.9 -4.0 acetyl-CoA acetyltransferase compare
SMc00492 -0.9 -0.9 hypothetical protein compare
SM_b21173 -0.9 -1.4 hypothetical protein compare
SMc04348 -0.9 -0.9 transcriptional regulator compare
SMc03161 -0.9 -4.9 oxidoreductase compare
SMc02856 -0.9 -5.6 penicillin-binding protein compare
SMc03967 -0.9 -1.1 Holliday junction resolvase compare
SMc00914 -0.9 -3.2 oxidoreductase compare
SMc02812 -0.8 -1.7 hypothetical protein compare
SM_b20994 -0.8 -2.5 hypothetical protein compare
SMa1095 -0.8 -0.8 hypothetical protein compare
SMc02850 -0.8 -1.8 DNA polymerase I compare
SMa0112 -0.8 -2.2 hypothetical protein compare
SMa0095 -0.8 -1.0 D-aminopeptidase compare
SMa0333 -0.8 -1.3 hypothetical protein compare
SMc03889 -0.8 -2.2 transporter compare
SMc02543 -0.8 -4.1 hypothetical protein compare
SMc03064 -0.8 -4.3 alpha-glucosidase compare
SMc00296 -0.8 -4.4 POLY3-hydroxybutyrate polymerase compare
SM_b21182 -0.8 -4.3 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source D-Trehalose dihydrate in Sinorhizobium meliloti 1021

For carbon source D-Trehalose dihydrate across organisms