Experiment set1IT023 for Burkholderia phytofirmans PsJN

Compare to:

L-Alanine carbon source

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS18825 +1.4 5.7 flagellar biosynthesis protein FliP compare
BPHYT_RS18775 +1.2 9.8 flagellar M-ring protein FliF compare
BPHYT_RS31840 +1.1 2.3 anhydrase compare
BPHYT_RS18890 +1.1 6.1 flagellar basal body rod protein FlgC compare
BPHYT_RS12550 +1.1 1.9 GTP-binding protein HflX compare
BPHYT_RS18945 +1.1 7.8 flagellar biosynthesis protein FlhB compare
BPHYT_RS20095 +1.1 1.6 transcriptional regulator compare
BPHYT_RS18780 +1.1 6.0 flagellar motor switch protein FliG compare
BPHYT_RS18785 +1.1 2.6 flagellar assembly protein FliH compare
BPHYT_RS18830 +1.1 7.8 flagellar biosynthesis protein FliQ compare
BPHYT_RS27410 +1.1 2.9 amidohydrolase compare
BPHYT_RS35310 +1.1 1.8 GCN5 family N-acetyltransferase compare
BPHYT_RS28360 +1.0 1.2 carboxymuconolactone decarboxylase compare
BPHYT_RS20515 +1.0 2.7 alpha/beta hydrolase compare
BPHYT_RS02765 +1.0 4.2 cytochrome BD oxidase subunit I compare
BPHYT_RS18900 +1.0 8.2 flagella basal body P-ring formation protein FlgA compare
BPHYT_RS19355 +1.0 8.1 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase compare
BPHYT_RS18895 +1.0 4.8 flagellar basal body rod protein FlgB compare
BPHYT_RS18875 +1.0 5.7 flagellar basal body rod protein FlgF compare
BPHYT_RS18940 +1.0 7.4 flagellar biosynthesis protein FlhA compare
BPHYT_RS30055 +1.0 2.0 hypothetical protein compare
BPHYT_RS30085 +1.0 1.9 hypothetical protein compare
BPHYT_RS18860 +1.0 3.1 flagellar P-ring protein FlgI compare
BPHYT_RS18855 +0.9 6.1 flagellar rod assembly protein FlgJ compare
BPHYT_RS18805 +0.9 5.5 flagellar basal body protein FliL compare
BPHYT_RS18880 +0.9 6.8 flagellar hook protein FlgE compare
BPHYT_RS19920 +0.9 1.6 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS18795 +0.9 7.5 flagellar export protein FliJ compare
BPHYT_RS09480 +0.9 1.3 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS08135 +0.9 1.7 hypothetical protein compare
BPHYT_RS18790 +0.9 5.4 ATP synthase compare
BPHYT_RS23990 +0.9 1.8 N-hydroxyarylamine O-acetyltransferase compare
BPHYT_RS18885 +0.9 4.6 flagellar basal body rod modification protein FlgD compare
BPHYT_RS20630 +0.9 1.7 patatin compare
BPHYT_RS18935 +0.9 5.0 flagellar biosynthesis regulator FlhF compare
BPHYT_RS19945 +0.9 3.3 hypothetical protein compare
BPHYT_RS28930 +0.9 1.2 chromosome partitioning protein ParA compare
BPHYT_RS01795 +0.9 5.4 histidine kinase compare
BPHYT_RS05395 +0.8 1.5 hypothetical protein compare
BPHYT_RS28620 +0.8 2.9 enoyl-CoA hydratase compare
BPHYT_RS18810 +0.8 5.7 flagellar motor switch protein FliM compare
BPHYT_RS35800 +0.8 1.9 TetR family transcriptional regulator compare
BPHYT_RS18835 +0.8 1.3 flagellar biosynthesis protein FliR compare
BPHYT_RS23445 +0.8 1.6 hexuronate transporter compare
BPHYT_RS26050 +0.8 2.0 ABC transporter permease compare
BPHYT_RS22640 +0.8 1.6 hydroxyproline-2-epimerase compare
BPHYT_RS25210 +0.8 1.2 drug:proton antiporter compare
BPHYT_RS10980 +0.8 2.1 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
BPHYT_RS23370 +0.8 1.8 glycosyl transferase family 1 compare
BPHYT_RS14250 +0.8 4.4 glycosyl transferase compare
BPHYT_RS18865 +0.7 2.7 flagellar L-ring protein FlgH compare
BPHYT_RS03090 +0.7 0.9 hypothetical protein compare
BPHYT_RS14255 +0.7 6.0 ABC transporter compare
BPHYT_RS25980 +0.7 1.2 urea carboxylase compare
BPHYT_RS02120 +0.7 2.0 hypothetical protein compare
BPHYT_RS33385 +0.7 1.3 major facilitator superfamily protein compare
BPHYT_RS10135 +0.7 1.2 hypothetical protein compare
BPHYT_RS07190 +0.7 2.2 acetyltransferase compare
BPHYT_RS02760 +0.7 2.4 cytochrome BD oxidase subunit II compare
BPHYT_RS14095 +0.7 2.5 phosphohistidine phosphatase compare
BPHYT_RS26915 +0.7 2.1 Fis family transcriptional regulator compare
BPHYT_RS05870 +0.7 2.9 hypothetical protein compare
BPHYT_RS21215 +0.7 3.3 Crp/Fnr family transcriptional regulator compare
BPHYT_RS10475 +0.7 1.3 mammalian cell entry protein compare
BPHYT_RS21625 +0.7 1.1 LysR family transcriptional regulator compare
BPHYT_RS30040 +0.7 1.2 hypothetical protein compare
BPHYT_RS23250 +0.7 1.1 hypothetical protein compare
BPHYT_RS01790 +0.7 5.6 LuxR family transcriptional regulator compare
BPHYT_RS09085 +0.7 2.2 mannosyltransferase compare
BPHYT_RS28875 +0.7 1.8 5-oxo-1,2,5-tricarboxylic-3-penten acid decarboxylase compare
BPHYT_RS30825 +0.7 1.8 extradiol dioxygenase compare
BPHYT_RS07960 +0.7 1.4 hypothetical protein compare
BPHYT_RS18870 +0.7 2.5 flagellar basal body rod protein FlgG compare
BPHYT_RS27060 +0.6 1.5 photosystem reaction center subunit H compare
BPHYT_RS30610 +0.6 1.3 major facilitator transporter compare
BPHYT_RS11970 +0.6 1.1 cupin compare
BPHYT_RS16250 +0.6 1.1 N5-carboxyaminoimidazole ribonucleotide mutase compare
BPHYT_RS03755 +0.6 1.4 pilus assembly protein PilE compare
BPHYT_RS02965 +0.6 1.5 membrane protein compare
BPHYT_RS07540 +0.6 1.0 hypothetical protein compare
BPHYT_RS31020 +0.6 1.5 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
BPHYT_RS31690 +0.6 2.4 hypothetical protein compare
BPHYT_RS22290 +0.6 2.7 membrane protein compare
BPHYT_RS01730 +0.6 1.3 serine/threonine protein kinase compare
BPHYT_RS18925 +0.6 3.9 RNA polymerase sigma70 compare
BPHYT_RS15035 +0.6 2.2 hypothetical protein compare
BPHYT_RS01620 +0.6 4.6 sensor histidine kinase compare
BPHYT_RS30880 +0.6 1.9 peptidase S13 compare
BPHYT_RS14005 +0.6 2.5 ABC transporter compare
BPHYT_RS08615 +0.6 1.0 hypothetical protein compare
BPHYT_RS21585 +0.6 2.2 short-chain dehydrogenase compare
BPHYT_RS32495 +0.6 1.3 ABC transporter compare
BPHYT_RS34305 +0.6 2.5 succinate-semialdehyde dehydrogenase compare
BPHYT_RS34745 +0.6 1.1 hypothetical protein compare
BPHYT_RS14410 +0.6 2.1 hypothetical protein compare
BPHYT_RS00150 +0.6 1.6 DEAD/DEAH box helicase compare
BPHYT_RS07835 +0.6 0.9 muconolactone delta-isomerase compare
BPHYT_RS13555 +0.6 1.0 acyl-CoA dehydrogenase compare
BPHYT_RS05620 +0.6 1.1 CsbD family protein compare
BPHYT_RS30840 +0.6 2.2 small mechanosensitive ion channel protein MscS compare
BPHYT_RS23030 +0.6 0.9 gluconate 2-dehydrogenase compare
BPHYT_RS33460 +0.6 0.9 protocatechuate 3,4-dioxygenase subunit alpha compare
BPHYT_RS09310 +0.6 3.7 sensor histidine kinase compare
BPHYT_RS17835 +0.6 2.2 protein tyrosine phosphatase compare
BPHYT_RS20290 +0.5 1.9 LysR family transcriptional regulator compare
BPHYT_RS31760 +0.5 1.6 aryldialkylphosphatase compare
BPHYT_RS13245 +0.5 2.5 hypothetical protein compare
BPHYT_RS13815 +0.5 2.0 hypothetical protein compare
BPHYT_RS11075 +0.5 1.2 membrane protein compare
BPHYT_RS34240 +0.5 1.7 ABC transporter for L-rhamnose/L-fucose/xylitol, permease component (from data) compare
BPHYT_RS02770 +0.5 2.9 membrane protein compare
BPHYT_RS20920 +0.5 2.6 oxidoreductase compare
BPHYT_RS27175 +0.5 0.7 DNA-binding protein compare
BPHYT_RS18800 +0.5 3.4 flagellar hook-length control protein compare
BPHYT_RS06120 +0.5 1.9 heat-shock protein compare
BPHYT_RS02860 +0.5 0.8 membrane protein compare
BPHYT_RS29235 +0.5 1.7 cell shape determination protein CcmA compare
BPHYT_RS30120 +0.5 1.5 heavy metal transporter compare
BPHYT_RS34530 +0.5 1.1 LysR family transcriptional regulator compare
BPHYT_RS26470 +0.5 1.0 MFS transporter compare
BPHYT_RS27525 +0.5 2.1 lipocalin compare
BPHYT_RS34220 +0.5 1.4 L-fucono-1,5-lactonase (from data) compare
BPHYT_RS05905 +0.5 0.7 hypothetical protein compare
BPHYT_RS12670 +0.5 1.4 cell division protein FtsB compare
BPHYT_RS07255 +0.5 2.0 4-oxalocrotonate decarboxylase compare
BPHYT_RS21075 +0.5 1.5 (2Fe-2S)-binding protein compare
BPHYT_RS10140 +0.5 1.7 ABC transporter substrate-binding protein compare
BPHYT_RS05520 +0.5 1.7 transcriptional regulator compare
BPHYT_RS25500 +0.5 1.0 hypothetical protein compare
BPHYT_RS07435 +0.5 1.1 amino acid transporter compare
BPHYT_RS17830 +0.5 0.9 histidine kinase compare
BPHYT_RS35580 +0.5 2.0 hypothetical protein compare
BPHYT_RS10635 +0.5 0.7 transcriptional regulator compare
BPHYT_RS26750 +0.5 1.0 aldolase compare
BPHYT_RS33690 +0.5 1.3 molybdate ABC transporter permease compare
BPHYT_RS34900 +0.5 1.1 hypothetical protein compare
BPHYT_RS02180 +0.5 1.2 hypothetical protein compare
BPHYT_RS30315 +0.5 1.4 LysR family transcriptional regulator compare
BPHYT_RS06455 +0.5 2.0 potassium-transporting ATPase C chain compare
BPHYT_RS16695 +0.5 3.3 glutamate/aspartate ABC transporter permease GltJ compare
BPHYT_RS16195 +0.5 1.8 carbon monoxide dehydrogenase subunit G compare
BPHYT_RS27845 +0.5 1.7 beta-lactamase compare
BPHYT_RS26740 +0.5 1.0 hypothetical protein compare
BPHYT_RS34565 +0.5 1.0 chemotaxis protein compare
BPHYT_RS36400 +0.5 0.9 hypothetical protein compare
BPHYT_RS35745 +0.5 3.5 AsnC family transcriptional regulator compare
BPHYT_RS34665 +0.5 1.4 hypothetical protein compare
BPHYT_RS11930 +0.5 1.2 3-hydroxybutyrate dehydrogenase compare
BPHYT_RS28300 +0.5 1.0 histone nucleoid-structuring protein H-NS compare
BPHYT_RS07475 +0.5 1.1 nitrate reductase compare
BPHYT_RS28840 +0.5 1.1 oxidoreductase compare
BPHYT_RS11235 +0.5 0.7 hypothetical protein compare
BPHYT_RS27655 +0.5 0.9 potassium transporter compare
BPHYT_RS08150 +0.5 0.6 membrane protein compare
BPHYT_RS28255 +0.5 1.0 hypothetical protein compare
BPHYT_RS24755 +0.5 1.2 catalase compare
BPHYT_RS27315 +0.5 3.0 DSBA oxidoreductase compare
BPHYT_RS07350 +0.5 1.2 ABC transporter ATP-binding protein compare
BPHYT_RS23875 +0.5 0.7 sugar ABC transporter ATP-binding protein compare
BPHYT_RS02435 +0.5 0.4 hypothetical protein compare
BPHYT_RS07705 +0.5 1.4 arginine succinyltransferase compare
BPHYT_RS26190 +0.5 2.1 lysine transporter LysE compare
BPHYT_RS03655 +0.5 0.8 membrane protein compare
BPHYT_RS04035 +0.5 1.5 transferase compare
BPHYT_RS15320 +0.5 0.7 hypothetical protein compare
BPHYT_RS19025 +0.5 3.0 transcriptional regulator compare
BPHYT_RS12395 +0.5 3.0 hypothetical protein compare
BPHYT_RS29920 +0.5 0.6 hypothetical protein compare
BPHYT_RS16690 +0.5 3.3 glutamate/aspartate transporter permease GltK compare
BPHYT_RS17165 +0.5 1.5 cell division protein ZapD compare
BPHYT_RS26490 +0.5 0.8 hypothetical protein compare
BPHYT_RS35400 +0.5 1.2 ABC transporter compare
BPHYT_RS22765 +0.5 2.1 beta-galactosidase compare
BPHYT_RS30505 +0.5 1.4 ABC transporter permease compare
BPHYT_RS09535 +0.5 2.0 BolA family transcriptional regulator compare
BPHYT_RS06335 +0.5 0.8 CopG family transcriptional regulator compare
BPHYT_RS34400 +0.5 1.5 hypothetical protein compare
BPHYT_RS20545 +0.5 1.1 hypothetical protein compare
BPHYT_RS21160 +0.5 0.8 NAD(P) transhydrogenase subunit beta compare
BPHYT_RS23895 +0.5 1.3 hypothetical protein compare
BPHYT_RS00980 +0.5 0.6 GCN5 family acetyltransferase compare
BPHYT_RS22255 +0.5 1.6 hypothetical protein compare
BPHYT_RS11230 +0.5 1.6 hypothetical protein compare
BPHYT_RS32605 +0.5 1.8 hypothetical protein compare
BPHYT_RS29320 +0.5 1.2 histidine kinase compare
BPHYT_RS36175 +0.5 1.6 hypothetical protein compare
BPHYT_RS07080 +0.5 0.9 glutathione S-transferase compare
BPHYT_RS05085 +0.5 1.2 LysR family transcriptional regulator compare
BPHYT_RS10860 +0.5 1.7 transcriptional regulator compare
BPHYT_RS09910 +0.5 1.5 tyramine oxidase compare
BPHYT_RS29005 +0.5 1.8 transporter compare
BPHYT_RS23430 +0.5 1.2 bifunctional D-altronate/D-mannonate dehydratase compare
BPHYT_RS20890 +0.5 1.6 transglycosylase compare
BPHYT_RS02160 +0.5 1.6 8-amino-7-oxononanoate synthase compare
BPHYT_RS29345 +0.5 1.2 lipoyl synthase compare
BPHYT_RS30210 +0.5 1.8 GCN5 family acetyltransferase compare
BPHYT_RS26115 +0.4 1.0 polysaccharide deacetylase compare
BPHYT_RS12905 +0.4 2.4 hypothetical protein compare
BPHYT_RS09920 +0.4 1.9 amino acid permease compare
BPHYT_RS34300 +0.4 1.5 major facilitator transporter compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source L-Alanine in Burkholderia phytofirmans PsJN

For carbon source L-Alanine across organisms