Experiment set1IT022 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A with Sodium nitrite 6 mM

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS06165 +2.8 16.8 nitrite transporter, HPP family (from data) conserved
CA265_RS18745 +2.7 2.9 hypothetical protein compare
CA265_RS01975 +1.9 2.9 cell division protein compare
CA265_RS23675 +1.7 3.2 hypothetical protein compare
CA265_RS18780 +1.6 4.7 YicC family protein compare
CA265_RS03275 +1.5 2.3 hypothetical protein compare
CA265_RS21000 +1.5 5.7 ribosome silencing factor compare
CA265_RS24355 +1.5 5.3 transcriptional regulator compare
CA265_RS23305 +1.4 1.8 hypothetical protein compare
CA265_RS06250 +1.4 1.7 RNA polymerase subunit sigma-70 compare
CA265_RS03715 +1.4 2.8 hypothetical protein compare
CA265_RS12780 +1.4 2.4 hypothetical protein compare
CA265_RS08445 +1.4 1.7 endonuclease compare
CA265_RS02760 +1.4 2.6 hypothetical protein compare
CA265_RS02425 +1.4 4.7 GTP cyclohydrolase compare
CA265_RS08090 +1.4 5.4 serine/threonine protein kinase compare
CA265_RS01960 +1.3 1.4 division/cell wall cluster transcriptional repressor MraZ compare
CA265_RS23030 +1.3 2.3 serine protease compare
CA265_RS04560 +1.2 2.1 hypothetical protein compare
CA265_RS12665 +1.2 1.6 cold-shock protein compare
CA265_RS22450 +1.2 2.7 GntR family transcriptional regulator compare
CA265_RS19030 +1.1 4.2 hypothetical protein compare
CA265_RS23140 +1.1 3.3 hypothetical protein compare
CA265_RS09195 +1.1 5.8 Fis family transcriptional regulator compare
CA265_RS22945 +1.1 2.7 hypothetical protein compare
CA265_RS06275 +1.1 6.9 aspartate kinase compare
CA265_RS10980 +1.1 6.3 histidine kinase compare
CA265_RS07755 +1.0 1.0 hypothetical protein compare
CA265_RS05075 +1.0 1.7 hypothetical protein compare
CA265_RS18760 +1.0 3.1 ribonuclease III compare
CA265_RS20695 +1.0 1.5 hypothetical protein compare
CA265_RS19940 +1.0 7.2 hypothetical protein compare
CA265_RS04330 +0.9 4.0 transcriptional regulator compare
CA265_RS23545 +0.9 1.1 NADH dehydrogenase subunit D compare
CA265_RS05575 +0.9 1.1 hypothetical protein compare
CA265_RS23510 +0.9 3.1 energy transducer TonB compare
CA265_RS01150 +0.9 1.6 hypothetical protein compare
CA265_RS03495 +0.9 1.5 cytochrome c biogenesis protein compare
CA265_RS21065 +0.9 1.1 hypothetical protein compare
CA265_RS01055 +0.9 2.3 hypothetical protein compare
CA265_RS13710 +0.9 2.1 hypothetical protein compare
CA265_RS06115 +0.9 3.7 DNA mismatch repair protein MutT compare
CA265_RS09520 +0.8 4.1 site-specific tyrosine recombinase XerD compare
CA265_RS16145 +0.8 2.7 PIN domain nuclease compare
CA265_RS05330 +0.8 0.8 hypothetical protein compare
CA265_RS19380 +0.8 4.6 beta-carotene 15,15'-monooxygenase compare
CA265_RS00025 +0.8 1.5 hypothetical protein compare
CA265_RS09140 +0.8 1.5 MerR family transcriptional regulator compare
CA265_RS06595 +0.8 1.0 Arc family DNA binding domain-containing protein compare
CA265_RS13240 +0.8 0.9 preprotein translocase subunit YajC compare
CA265_RS20225 +0.8 1.0 DNA (cytosine-5-)-methyltransferase compare
CA265_RS19640 +0.8 1.6 hypothetical protein compare
CA265_RS22370 +0.8 1.6 hypothetical protein compare
CA265_RS06280 +0.8 3.3 GNAT family N-acetyltransferase compare
CA265_RS23455 +0.8 2.9 hypothetical protein compare
CA265_RS24195 +0.8 4.9 TetR family transcriptional regulator compare
CA265_RS02675 +0.8 2.6 hypothetical protein compare
CA265_RS01370 +0.8 1.7 cbb3-type cytochrome oxidase assembly protein CcoS compare
CA265_RS21255 +0.8 4.0 hypothetical protein compare
CA265_RS20350 +0.8 2.7 gliding motility lipoprotein GldH compare
CA265_RS08175 +0.7 4.2 homoserine O-acetyltransferase compare
CA265_RS23950 +0.7 1.3 ribonuclease HII compare
CA265_RS18115 +0.7 3.4 gliding motility protein GldN compare
CA265_RS16775 +0.7 2.7 transcriptional initiation protein Tat compare
CA265_RS04790 +0.7 1.5 hypothetical protein compare
CA265_RS21330 +0.7 3.9 TetR family transcriptional regulator compare
CA265_RS25345 +0.7 1.7 hypothetical protein compare
CA265_RS10695 +0.7 1.1 hypothetical protein compare
CA265_RS16005 +0.7 1.9 hypothetical protein compare
CA265_RS19860 +0.7 1.8 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) (from data) compare
CA265_RS21450 +0.7 2.0 imidazolonepropionase compare
CA265_RS07735 +0.7 1.3 transcriptional regulator compare
CA265_RS21130 +0.7 3.0 Co2+/Mg2+ efflux protein ApaG compare
CA265_RS18420 +0.7 2.2 hypothetical protein compare
CA265_RS01560 +0.7 1.8 circadian clock protein KaiB compare
CA265_RS04720 +0.7 2.5 DoxX family protein compare
CA265_RS20365 +0.7 1.1 hypothetical protein compare
CA265_RS03565 +0.7 2.2 phosphonate ABC transporter ATP-binding protein compare
CA265_RS23515 +0.7 1.6 hypothetical protein compare
CA265_RS22310 +0.7 2.3 superoxide dismutase compare
CA265_RS08570 +0.7 1.1 dehydratase compare
CA265_RS25375 +0.7 1.6 hypothetical protein compare
CA265_RS12000 +0.7 2.1 hypothetical protein compare
CA265_RS23045 +0.7 1.1 cold-shock protein compare
CA265_RS00490 +0.7 1.5 hypothetical protein compare
CA265_RS22475 +0.7 1.5 hypothetical protein compare
CA265_RS22800 +0.7 3.2 glycosyl transferase compare
CA265_RS14825 +0.7 0.7 outer membrane protein assembly factor BamD compare
CA265_RS21645 +0.7 2.6 response regulator compare
CA265_RS17495 +0.7 0.7 lipoprotein signal peptidase compare
CA265_RS15200 +0.7 1.0 hypothetical protein compare
CA265_RS22190 +0.7 2.2 hypothetical protein compare
CA265_RS23265 +0.7 1.5 iron-binding protein compare
CA265_RS11050 +0.7 2.0 hypothetical protein compare
CA265_RS07440 +0.7 3.1 hypothetical protein compare
CA265_RS20670 +0.7 1.7 hypothetical protein compare
CA265_RS24855 +0.7 2.0 peptidase C26 compare
CA265_RS21840 +0.7 2.2 phosphohydrolase compare
CA265_RS21365 +0.7 0.9 thiol reductase thioredoxin compare
CA265_RS22750 +0.7 1.8 hypothetical protein compare
CA265_RS11855 +0.6 1.8 hypothetical protein compare
CA265_RS08935 +0.6 2.5 (2Fe-2S)-binding protein compare
CA265_RS23605 +0.6 2.7 alkaline phosphatase compare
CA265_RS12800 +0.6 2.0 NAD(P)H-dependent oxidoreductase compare
CA265_RS03015 +0.6 1.5 tRNA-specific adenosine deaminase compare
CA265_RS06405 +0.6 1.0 hypothetical protein compare
CA265_RS07535 +0.6 1.4 ATPase compare
CA265_RS05960 +0.6 2.0 short-chain dehydrogenase compare
CA265_RS00040 +0.6 1.1 hypothetical protein compare
CA265_RS24495 +0.6 1.9 hypothetical protein compare
CA265_RS22530 +0.6 2.4 RDD family protein compare
CA265_RS13010 +0.6 1.4 transcriptional regulator compare
CA265_RS15070 +0.6 1.4 hypothetical protein compare
CA265_RS25030 +0.6 1.5 hypothetical protein compare
CA265_RS14520 +0.6 2.1 peptidase M48 compare
CA265_RS09885 +0.6 1.8 hypothetical protein compare
CA265_RS03415 +0.6 1.5 hypothetical protein compare
CA265_RS24230 +0.6 3.2 RNA polymerase sigma factor compare
CA265_RS02295 +0.6 1.3 metal-binding protein compare
CA265_RS21080 +0.6 1.7 hypothetical protein compare
CA265_RS05205 +0.6 2.0 hypothetical protein compare
CA265_RS07135 +0.6 2.2 MarR family transcriptional regulator compare
CA265_RS17030 +0.6 2.4 band 7 protein compare
CA265_RS19240 +0.6 0.3 hypothetical protein compare
CA265_RS23435 +0.6 3.1 hypothetical protein compare
CA265_RS01460 +0.6 1.9 hypothetical protein compare
CA265_RS19100 +0.6 1.4 damage-inducible protein DinB compare
CA265_RS17455 +0.6 1.5 hypothetical protein compare
CA265_RS20275 +0.6 2.3 LD-carboxypeptidase compare
CA265_RS18495 +0.6 0.8 hypothetical protein compare
CA265_RS17285 +0.6 0.9 hypothetical protein compare
CA265_RS15725 +0.6 1.9 hypothetical protein compare
CA265_RS24505 +0.6 1.2 short-chain dehydrogenase/reductase compare
CA265_RS19875 +0.6 2.6 Altronate dehydratase (EC 4.2.1.7) (from data) compare
CA265_RS21670 +0.6 1.0 hypothetical protein compare
CA265_RS01165 +0.6 1.2 hypothetical protein compare
CA265_RS18085 +0.6 1.2 hypothetical protein compare
CA265_RS23875 +0.6 1.5 hypothetical protein compare
CA265_RS19410 +0.6 1.5 hypothetical protein compare
CA265_RS22805 +0.6 2.4 glycosyl transferase compare
CA265_RS08070 +0.6 0.7 tRNA-Ser compare
CA265_RS12825 +0.6 1.9 hypothetical protein compare
CA265_RS02110 +0.6 1.2 hypothetical protein compare
CA265_RS18450 +0.6 1.9 peptidase compare
CA265_RS07785 +0.6 2.6 hypothetical protein compare
CA265_RS04700 +0.6 2.4 hypothetical protein compare
CA265_RS19665 +0.6 0.8 cysteine methyltransferase compare
CA265_RS19465 +0.6 1.4 protein tyrosine phosphatase compare
CA265_RS21225 +0.6 3.0 hypothetical protein compare
CA265_RS20095 +0.6 1.4 NADH oxidase compare
CA265_RS01355 +0.6 1.5 hypothetical protein compare
CA265_RS16205 +0.6 1.9 transcriptional regulator compare
CA265_RS00395 +0.6 1.7 hypothetical protein compare
CA265_RS19910 +0.6 1.9 GDSL family lipase compare
CA265_RS24205 +0.6 2.5 hypothetical protein compare
CA265_RS00515 +0.6 1.3 hypothetical protein compare
CA265_RS05515 +0.6 1.3 hypothetical protein compare
CA265_RS18950 +0.6 2.0 transcriptional regulator compare
CA265_RS15165 +0.6 1.8 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
CA265_RS06930 +0.6 2.3 hypothetical protein compare
CA265_RS25060 +0.6 1.3 hypothetical protein compare
CA265_RS06285 +0.6 2.3 YggS family pyridoxal phosphate enzyme compare
CA265_RS03610 +0.6 1.8 imidazole glycerol phosphate synthase subunit HisF compare
CA265_RS12340 +0.6 2.3 hypothetical protein compare
CA265_RS14400 +0.5 3.1 DNA topoisomerase I compare
CA265_RS24480 +0.5 1.5 hypothetical protein compare
CA265_RS07945 +0.5 2.4 glycosyl transferase compare
CA265_RS06440 +0.5 0.6 hypothetical protein compare
CA265_RS23680 +0.5 2.8 hypothetical protein compare
CA265_RS06125 +0.5 2.9 galactokinase, -1-phosphate forming (EC 2.7.1.6) (from data) compare
CA265_RS04950 +0.5 2.3 hypothetical protein compare
CA265_RS01565 +0.5 1.4 circadian clock protein KaiB compare
CA265_RS08875 +0.5 1.1 tetratricopeptide repeat protein compare
CA265_RS17950 +0.5 0.7 hypothetical protein compare
CA265_RS20380 +0.5 2.1 hemagglutinin compare
CA265_RS09650 +0.5 0.8 diaminopimelate decarboxylase compare
CA265_RS19405 +0.5 1.6 transcriptional regulator compare
CA265_RS16760 +0.5 1.9 hypothetical protein compare
CA265_RS18425 +0.5 1.6 sprT domain-containing protein compare
CA265_RS11095 +0.5 1.7 hypothetical protein compare
CA265_RS19535 +0.5 2.5 hypothetical protein compare
CA265_RS00650 +0.5 0.9 hypothetical protein compare
CA265_RS14075 +0.5 0.8 ubiquinol-cytochrome C reductase compare
CA265_RS18880 +0.5 2.5 RNA-binding transcriptional accessory protein compare
CA265_RS07940 +0.5 3.0 capsular biosynthesis protein compare
CA265_RS02840 +0.5 2.4 30S ribosomal protein S30 compare
CA265_RS13555 +0.5 1.6 hypothetical protein compare
CA265_RS24995 +0.5 2.0 hypothetical protein compare
CA265_RS22350 +0.5 1.8 diacylglycerol kinase compare
CA265_RS01315 +0.5 2.8 alpha-1,3-galactosidase B compare
CA265_RS17095 +0.5 2.0 SAM-dependent methyltransferase compare
CA265_RS21555 +0.5 0.9 hypothetical protein compare
CA265_RS04710 +0.5 1.2 hypothetical protein compare
CA265_RS23895 +0.5 1.1 preprotein translocase compare
CA265_RS20440 +0.5 2.0 hypothetical protein compare
CA265_RS23020 +0.5 2.9 hypothetical protein compare
CA265_RS02260 +0.5 1.4 GNAT family N-acetyltransferase compare
CA265_RS08650 +0.5 2.1 short-chain dehydrogenase compare
CA265_RS10545 +0.5 0.9 hypothetical protein compare
CA265_RS09045 +0.5 2.6 ABC transporter permease compare


Specific Phenotypes

For 1 genes in this experiment

For stress Sodium nitrite in Pedobacter sp. GW460-11-11-14-LB5

For stress Sodium nitrite across organisms