Experiment set1IT021 for Pseudomonas fluorescens FW300-N2E2

Compare to:

L-Malic acid disodium salt monohydrate carbon source

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_3667 +1.2 2.8 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_4678 +1.1 2.1 hypothetical protein compare
Pf6N2E2_2582 +1.0 4.5 Flagellar motor switch protein FliN compare
Pf6N2E2_5646 +1.0 1.9 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_5508 +1.0 1.7 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_2402 +1.0 2.4 hypothetical protein compare
Pf6N2E2_2438 +0.9 2.3 hypothetical protein compare
Pf6N2E2_3033 +0.9 2.1 hypothetical protein compare
Pf6N2E2_4153 +0.9 0.8 Sensory box histidine kinase compare
Pf6N2E2_1596 +0.9 2.3 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_2788 +0.8 2.9 Transcriptional regulator, AsnC family compare
Pf6N2E2_4305 +0.8 1.2 FIG00959590: hypothetical protein compare
Pf6N2E2_4531 +0.8 1.9 hypothetical protein compare
Pf6N2E2_3475 +0.8 1.5 hypothetical protein compare
Pf6N2E2_4160 +0.8 1.9 Cytochrome c5 compare
Pf6N2E2_3074 +0.8 2.1 FIG00960973: hypothetical protein compare
Pf6N2E2_2633 +0.8 2.1 Nitroreductase family protein compare
Pf6N2E2_919 +0.8 2.3 FIG00954373: hypothetical protein compare
Pf6N2E2_2627 +0.8 4.4 Flagellar basal-body rod protein FlgG compare
Pf6N2E2_5178 +0.8 1.5 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_2869 +0.7 1.6 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_3514 +0.7 2.4 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) compare
Pf6N2E2_3981 +0.7 6.8 T1SS secreted agglutinin RTX compare
Pf6N2E2_1860 +0.7 1.9 Ferredoxin, 2Fe-2S compare
Pf6N2E2_5720 +0.7 6.1 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_5392 +0.7 2.8 Molybdenum cofactor biosynthesis protein MoaC compare
Pf6N2E2_3293 +0.7 1.8 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Pf6N2E2_3171 +0.7 1.5 hypothetical protein compare
Pf6N2E2_1989 +0.7 2.8 hypothetical protein compare
Pf6N2E2_1617 +0.7 1.3 COG2199: FOG: GGDEF domain compare
Pf6N2E2_3978 +0.7 6.1 Type I secretion system, membrane fusion protein LapC compare
Pf6N2E2_2591 +0.7 3.1 Flagellar assembly protein FliH compare
Pf6N2E2_4367 +0.7 2.3 hypothetical protein compare
Pf6N2E2_4974 +0.7 5.0 DedA protein compare
Pf6N2E2_1089 +0.7 2.0 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_1116 +0.7 1.9 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_2175 +0.7 2.5 Transcriptional regulator, RpiR family compare
Pf6N2E2_2583 +0.7 4.4 Flagellar motor switch protein FliM compare
Pf6N2E2_16 +0.7 1.5 hypothetical protein compare
Pf6N2E2_2103 +0.7 2.9 hypothetical protein compare
Pf6N2E2_923 +0.6 2.1 Haloacid dehalogenase, type II (EC 3.8.1.2) compare
Pf6N2E2_1147 +0.6 2.0 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_6087 +0.6 2.2 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_2510 +0.6 2.5 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_2628 +0.6 3.6 Flagellar basal-body rod protein FlgF compare
Pf6N2E2_2827 +0.6 0.9 hypothetical protein compare
Pf6N2E2_3979 +0.6 5.1 Type I secretion system ATPase, LssB family LapB compare
Pf6N2E2_1391 +0.6 2.3 DNA-binding response regulator, LuxR family compare
Pf6N2E2_2603 +0.6 4.1 hypothetical protein compare
Pf6N2E2_827 +0.6 1.9 probable dioxygenase compare
Pf6N2E2_114 +0.6 2.3 Polysaccharide biosynthesis protein compare
Pf6N2E2_2594 +0.6 4.5 Flagellar hook-basal body complex protein FliE compare
Pf6N2E2_3432 +0.6 3.1 Ais protein, putative compare
Pf6N2E2_4773 +0.6 1.0 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_2590 +0.6 4.7 Flagellum-specific ATP synthase FliI compare
Pf6N2E2_3397 +0.6 2.6 Phage protein compare
Pf6N2E2_1602 +0.6 2.6 hypothetical protein compare
Pf6N2E2_3156 +0.6 2.8 POSSIBLE MEMBRANE PROTEIN compare
Pf6N2E2_1706 +0.6 1.9 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_5694 +0.6 3.3 Flagellar basal-body rod protein FlgB compare
Pf6N2E2_144 +0.6 5.2 Uncharacterized protein YtfM precursor compare
Pf6N2E2_5207 +0.6 1.7 hypothetical protein compare
Pf6N2E2_5661 +0.6 2.5 L-Arginine ABC transporter, permease protein AotQ (from data) compare
Pf6N2E2_3792 +0.6 3.5 Glucans biosynthesis protein G precursor compare
Pf6N2E2_3980 +0.6 4.7 Type I secretion system, outer membrane component LapE compare
Pf6N2E2_2592 +0.6 3.3 Flagellar motor switch protein FliG compare
Pf6N2E2_413 +0.6 1.3 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf6N2E2_2864 +0.6 1.5 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_5510 +0.6 1.5 FIG00955324: hypothetical protein compare
Pf6N2E2_4743 +0.6 0.9 hypothetical protein compare
Pf6N2E2_2394 +0.5 2.0 FIG006220: Hypothetical MbtH-like protein compare
Pf6N2E2_4148 +0.5 3.6 Glutamate-aspartate carrier protein compare
Pf6N2E2_3664 +0.5 3.8 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_1441 +0.5 1.0 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_5328 +0.5 2.7 FIG00958649: hypothetical protein compare
Pf6N2E2_1081 +0.5 1.2 probable membrane protein YPO3302 compare
Pf6N2E2_2503 +0.5 0.9 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_718 +0.5 2.0 Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) compare
Pf6N2E2_3569 +0.5 1.5 hypothetical protein compare
Pf6N2E2_3271 +0.5 1.9 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_3791 +0.5 4.0 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_2585 +0.5 4.0 Flagellar hook-length control protein FliK compare
Pf6N2E2_1875 +0.5 1.8 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_2578 +0.5 1.4 Flagellar biosynthesis protein FliR compare
Pf6N2E2_3276 +0.5 2.0 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_5869 +0.5 1.7 Helicase subunit of the DNA excision repair complex compare
Pf6N2E2_6052 +0.5 2.4 Hydantoin racemase (EC 5.1.99.-) compare
Pf6N2E2_2288 +0.5 2.2 FIG00953423: hypothetical protein compare
Pf6N2E2_4584 +0.5 2.2 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_5130 +0.5 1.2 hypothetical protein compare
Pf6N2E2_5150 +0.5 2.4 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_5898 +0.5 2.3 Integral membrane protein compare
Pf6N2E2_1312 +0.5 1.9 4-hydroxyphenylacetate symporter, major facilitator superfamily (MFS) compare
Pf6N2E2_4270 +0.5 3.6 putative Glutathione-regulated potassium-efflux system protein KefB compare
Pf6N2E2_3239 +0.5 3.9 FIG00963364: hypothetical protein compare
Pf6N2E2_2496 +0.5 1.2 FIG00956575: hypothetical protein compare
Pf6N2E2_829 +0.5 2.2 TesB-like acyl-CoA thioesterase 1 compare
Pf6N2E2_3323 +0.5 1.6 hypothetical protein compare
Pf6N2E2_3659 +0.5 3.0 Protein fixF compare
Pf6N2E2_433 +0.5 2.0 Enoyl-[acyl-carrier-protein] reductase [FMN] (EC 1.3.1.9) compare
Pf6N2E2_3453 +0.5 2.8 Transcriptional regulator, LysR family compare
Pf6N2E2_2513 +0.5 2.1 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_2795 +0.5 0.8 putative exported protein compare
Pf6N2E2_478 +0.5 2.2 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
Pf6N2E2_5014 +0.5 0.9 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_1283 +0.5 1.6 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2755 +0.5 1.1 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_3942 +0.5 3.7 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_1435 +0.5 1.7 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
Pf6N2E2_724 +0.5 1.4 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf6N2E2_987 +0.5 1.1 hypothetical protein compare
Pf6N2E2_2579 +0.5 2.5 Flagellar biosynthesis protein FliQ compare
Pf6N2E2_5696 +0.5 2.8 Flagellar basal-body rod modification protein FlgD compare
Pf6N2E2_238 +0.5 1.2 hypothetical protein compare
Pf6N2E2_2597 +0.5 3.9 Flagellar regulatory protein FleQ compare
Pf6N2E2_4342 +0.5 1.5 Protein phosphatase ImpM compare
Pf6N2E2_2593 +0.5 2.7 Flagellar M-ring protein FliF compare
Pf6N2E2_2602 +0.5 3.0 Flagellin protein FlaA compare
Pf6N2E2_665 +0.5 1.3 Acetoin dehydrogenase E1 component alpha-subunit (EC 1.2.4.-) compare
Pf6N2E2_4477 +0.5 1.8 Z-ring-associated protein ZapA compare
Pf6N2E2_3130 +0.5 1.7 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf6N2E2_1034 +0.5 0.9 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2626 +0.5 3.4 Flagellar L-ring protein FlgH compare
Pf6N2E2_2741 +0.4 2.1 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
Pf6N2E2_2580 +0.4 1.7 Flagellar biosynthesis protein FliP compare
Pf6N2E2_1966 +0.4 1.0 SAM-dependent methyltransferases compare
Pf6N2E2_3658 +0.4 3.1 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_1092 +0.4 1.4 Probable vanillate O-demethylase oxygenase subunit oxidoreductase protein (EC 1.14.13.-) compare
Pf6N2E2_2500 +0.4 2.2 Putative membrane protein compare
Pf6N2E2_5695 +0.4 2.8 Flagellar basal-body rod protein FlgC compare
Pf6N2E2_953 +0.4 1.2 FIG00958851: hypothetical protein compare
Pf6N2E2_5394 +0.4 1.4 Molybdenum cofactor biosynthesis protein MoaE compare
Pf6N2E2_503 +0.4 2.2 sensor histidine kinase compare
Pf6N2E2_664 +0.4 0.8 Acetoin catabolism protein X compare
Pf6N2E2_3737 +0.4 1.5 General secretion pathway protein M compare
Pf6N2E2_2011 +0.4 2.6 FIG00958137: hypothetical protein compare
Pf6N2E2_674 +0.4 2.9 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) compare
Pf6N2E2_464 +0.4 0.9 Sensory histidine kinase QseC compare
Pf6N2E2_5041 +0.4 2.6 Uncharacterized protein conserved in bacteria compare
Pf6N2E2_2576 +0.4 3.6 Flagellar biosynthesis protein FlhA compare
Pf6N2E2_5691 +0.4 2.6 Flagellar basal-body P-ring formation protein FlgA compare
Pf6N2E2_5697 +0.4 3.7 Flagellar hook protein FlgE compare
Pf6N2E2_4415 +0.4 1.0 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Pf6N2E2_2962 +0.4 2.0 ABC transporter for L-Lysine, ATPase component (from data) compare
Pf6N2E2_4343 +0.4 2.2 Phosphoprotein phosphatase PppA compare
Pf6N2E2_2022 +0.4 2.1 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_2246 +0.4 2.4 Arabinose efflux permease compare
Pf6N2E2_94 +0.4 1.7 Cyn operon transcriptional activator compare
Pf6N2E2_5749 +0.4 1.6 hypothetical protein compare
Pf6N2E2_5346 +0.4 1.3 rRNA small subunit methyltransferase I compare
Pf6N2E2_1861 +0.4 1.8 Ferredoxin reductase compare
Pf6N2E2_3695 +0.4 1.3 Helix-turn-helix motif compare
Pf6N2E2_145 +0.4 3.3 putative exported protein compare
Pf6N2E2_316 +0.4 1.3 membrane protein, putative compare
Pf6N2E2_2970 +0.4 1.2 methylated-DNA--protein-cysteine methyltransferase-related protein compare
Pf6N2E2_5444 +0.4 1.6 Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) compare
Pf6N2E2_1533 +0.4 1.9 membrane protein, putative compare
Pf6N2E2_546 +0.4 1.1 FIG00966904: hypothetical protein compare
Pf6N2E2_1981 +0.4 2.1 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_4084 +0.4 2.0 Transcriptional regulator compare
Pf6N2E2_4943 +0.4 1.1 PspA/IM30 family protein compare
Pf6N2E2_4096 +0.4 3.1 Sulfate transporter family protein in cluster with carbonic anhydrase compare
Pf6N2E2_92 +0.4 1.5 hypothetical protein compare
Pf6N2E2_5057 +0.4 1.4 hypothetical protein compare
Pf6N2E2_2563 +0.4 3.0 FIG00953562: hypothetical protein compare
Pf6N2E2_1046 +0.4 2.0 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_4479 +0.4 0.8 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_2223 +0.4 1.4 hypothetical protein compare
Pf6N2E2_1975 +0.4 1.5 Integrase regulator R compare
Pf6N2E2_1758 +0.4 0.9 Transcriptional regulator, MarR family compare
Pf6N2E2_2195 +0.4 1.5 cI compare
Pf6N2E2_2178 +0.4 2.2 FIG00960144: hypothetical protein compare
Pf6N2E2_89 +0.4 0.9 hypothetical protein compare
Pf6N2E2_1398 +0.4 1.7 Rhodanese-related sulfurtransferase compare
Pf6N2E2_6030 +0.4 1.3 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_942 +0.4 0.9 Mll6465 protein compare
Pf6N2E2_4095 +0.4 2.8 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_772 +0.4 2.6 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_2229 +0.4 2.2 Major facilitator family transporter compare
Pf6N2E2_4162 +0.4 1.0 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_2249 +0.4 2.5 Proton/glutamate symport protein @ Sodium/glutamate symport protein compare
Pf6N2E2_1328 +0.4 1.8 Methyl-accepting chemotaxis protein compare
Pf6N2E2_367 +0.4 1.3 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_3901 +0.4 1.2 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Pf6N2E2_1161 +0.4 2.1 FIG00961921: hypothetical protein compare
Pf6N2E2_3321 +0.4 1.7 Ornithine cyclodeaminase (EC 4.3.1.12) compare
Pf6N2E2_1335 +0.4 1.4 Phospholipid-binding protein compare
Pf6N2E2_5637 +0.4 1.6 hypothetical protein compare
Pf6N2E2_1068 +0.4 2.0 outer membrane autotransporter compare
Pf6N2E2_519 +0.4 1.9 Myo-inositol 2-dehydrogenase (EC 1.1.1.18) compare
Pf6N2E2_2736 +0.4 1.8 hypothetical protein compare
Pf6N2E2_4353 +0.4 1.8 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_1534 +0.4 0.9 Probable transmembrane protein compare
Pf6N2E2_1108 +0.4 2.0 Methyltransferase (EC 2.1.1.-) compare
Pf6N2E2_1964 +0.4 2.2 Transcriptional regulator of various polyols utilization, AraC family compare
Pf6N2E2_2754 +0.4 1.6 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf6N2E2_1496 +0.4 1.3 Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_3096 +0.4 0.7 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_4551 +0.4 1.7 hypothetical protein compare
Pf6N2E2_3956 +0.4 1.8 FIG00960943: hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source L-Malic acid disodium salt monohydrate in Pseudomonas fluorescens FW300-N2E2

For carbon source L-Malic acid disodium salt monohydrate across organisms