Experiment set1IT021 for Pseudomonas fluorescens FW300-N1B4

Compare to:

D-Glucose carbon source

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_1831 -3.7 -10.5 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_15 -3.6 -4.3 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_2880 -3.4 -11.8 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_6 -3.3 -5.4 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_1533 -3.2 -7.5 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_1534 -3.2 -17.3 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_5665 -3.2 -6.0 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_2009 -3.1 -4.7 LysR family transcriptional regulator PA5437 compare
Pf1N1B4_2879 -3.0 -7.1 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf1N1B4_1830 -3.0 -8.7 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_3518 -3.0 -3.9 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Pf1N1B4_2303 -2.9 -13.8 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_1626 -2.8 -7.5 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_2112 -2.8 -13.5 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_1408 -2.7 -4.6 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_742 -2.7 -8.4 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_1624 -2.7 -8.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_1307 -2.7 -2.6 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_2545 -2.7 -13.6 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_2858 -2.6 -11.1 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf1N1B4_2548 -2.6 -7.1 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_3697 -2.6 -7.6 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_2338 -2.6 -8.1 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1334 -2.5 -2.9 FIG00955840: hypothetical protein compare
Pf1N1B4_5666 -2.5 -3.3 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_1617 -2.5 -7.3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) compare
Pf1N1B4_2878 -2.5 -8.1 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf1N1B4_1627 -2.5 -5.0 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_2549 -2.5 -9.1 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_2272 -2.4 -4.8 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_847 -2.4 -9.2 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_2384 -2.4 -9.3 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf1N1B4_2337 -2.4 -5.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_350 -2.4 -7.0 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_1057 -2.4 -3.5 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_1565 -2.3 -4.6 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf1N1B4_12 -2.3 -7.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2011 -2.3 -7.9 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_2547 -2.3 -3.4 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_1315 -2.2 -8.0 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Pf1N1B4_3812 -2.2 -7.8 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
Pf1N1B4_1434 -2.2 -6.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2282 -2.2 -8.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_1067 -2.1 -5.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_762 -2.1 -5.8 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_4065 -2.1 -7.3 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_600 -2.1 -5.8 Glucokinase (EC 2.7.1.2) compare
Pf1N1B4_733 -2.0 -2.7 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Pf1N1B4_3506 -2.0 -7.1 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_4029 -2.0 -3.3 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) compare
Pf1N1B4_58 -2.0 -6.0 Transaldolase (EC 2.2.1.2) compare
Pf1N1B4_5498 -2.0 -2.2 hypothetical protein compare
Pf1N1B4_2850 -1.9 -7.4 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_2010 -1.8 -5.6 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_3081 -1.8 -14.6 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf1N1B4_652 -1.7 -8.2 Sensory box histidine kinase compare
Pf1N1B4_595 -1.7 -8.1 Glucose ABC transport system, inner membrane component 1 compare
Pf1N1B4_2859 -1.7 -11.5 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf1N1B4_2487 -1.7 -7.5 Biotin synthase (EC 2.8.1.6) compare
Pf1N1B4_3451 -1.7 -3.7 Aspartokinase (EC 2.7.2.4) compare
Pf1N1B4_1 -1.7 -3.5 Colicin V production protein compare
Pf1N1B4_4038 -1.6 -2.4 NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) compare
Pf1N1B4_593 -1.6 -5.3 Glucose ABC transporter, ATP-binding subunit (EC 3.6.3.-) compare
Pf1N1B4_2280 -1.6 -7.3 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_4040 -1.6 -2.6 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
Pf1N1B4_2552 -1.6 -3.4 OsmC/Ohr family protein compare
Pf1N1B4_578 -1.5 -2.4 enoyl-CoA hydratase, R-specific compare
Pf1N1B4_3833 -1.5 -6.4 Major porin and structural outer membrane porin OprF compare
Pf1N1B4_1906 -1.5 -3.4 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_1566 -1.5 -6.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf1N1B4_1329 -1.5 -5.3 Cobalamin biosynthesis protein CobG compare
Pf1N1B4_1653 -1.5 -5.8 Branched-chain amino acid transport protein AzlC compare
Pf1N1B4_1625 -1.5 -3.9 FIG00956267: hypothetical protein compare
Pf1N1B4_3709 -1.4 -3.5 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf1N1B4_412 -1.4 -2.5 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf1N1B4_556 -1.4 -3.8 Gluconate permease compare
Pf1N1B4_3143 -1.3 -2.7 RecA protein compare
Pf1N1B4_4953 -1.3 -3.1 Selenocysteine-specific translation elongation factor compare
Pf1N1B4_5137 -1.3 -5.9 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf1N1B4_7 -1.3 -4.1 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf1N1B4_4041 -1.2 -3.0 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_5059 -1.2 -2.4 Transcriptional regulator, LysR family compare
Pf1N1B4_594 -1.2 -4.9 Glucose ABC transport system, inner membrane component 2 compare
Pf1N1B4_4648 -1.2 -2.4 transcriptional regulator, MerR family compare
Pf1N1B4_596 -1.2 -3.4 Glucose ABC transport system, periplasmic sugar-binding protein compare
Pf1N1B4_3153 -1.2 -1.9 hypothetical protein compare
Pf1N1B4_598 -1.1 -3.4 Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster compare
Pf1N1B4_4030 -1.1 -2.7 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_2368 -1.1 -2.5 Malonate transporter, MadL subunit compare
Pf1N1B4_4007 -1.1 -2.2 sigma-54 dependent transcriptional regulator compare
Pf1N1B4_1159 -1.1 -2.5 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf1N1B4_2943 -1.1 -2.3 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_2488 -1.1 -4.7 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf1N1B4_2247 -1.1 -2.1 FMN reductase (EC 1.5.1.29) compare
Pf1N1B4_1679 -1.1 -1.5 Membrane-fusion protein compare
Pf1N1B4_2526 -1.1 -8.1 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf1N1B4_4715 -1.1 -2.1 Transcriptional regulator compare
Pf1N1B4_4039 -1.1 -4.3 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) compare
Pf1N1B4_164 -1.1 -2.1 ADP-ribosylglycohydrolase family protein compare
Pf1N1B4_616 -1.1 -2.1 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_4028 -1.0 -2.3 NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) compare
Pf1N1B4_2105 -1.0 -2.0 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf1N1B4_5760 -1.0 -2.2 Nitric-oxide reductase subunit C (EC 1.7.99.7) compare
Pf1N1B4_929 -1.0 -1.9 FIG00964214: hypothetical protein compare
Pf1N1B4_1613 -1.0 -2.1 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf1N1B4_1113 -1.0 -4.0 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_76 -1.0 -2.4 ATP binding protein compare
Pf1N1B4_1611 -1.0 -3.3 Nitrogen regulation protein NR(I) compare
Pf1N1B4_5402 -1.0 -1.9 hypothetical protein compare
Pf1N1B4_5187 -1.0 -1.0 5S RNA compare
Pf1N1B4_2486 -1.0 -1.9 hypothetical protein compare
Pf1N1B4_2987 -1.0 -3.2 NAD-dependent formate dehydrogenase delta subunit compare
Pf1N1B4_4359 -1.0 -3.0 PvcA protein, related to known isonitrile synthases compare
Pf1N1B4_322 -1.0 -2.4 nucleotide sugar epimerase/dehydratase WbpM compare
Pf1N1B4_27 -1.0 -2.8 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_5814 -1.0 -2.4 putative membrane protein compare
Pf1N1B4_5383 -1.0 -5.2 hypothetical protein compare
Pf1N1B4_3911 -1.0 -2.8 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf1N1B4_2163 -0.9 -1.2 hypothetical protein compare
Pf1N1B4_4103 -0.9 -1.6 Flagellar synthesis regulator FleN compare
Pf1N1B4_2856 -0.9 -2.8 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_564 -0.9 -2.1 ABC-type phosphate/phosphonate transport system, periplasmic component compare
Pf1N1B4_5018 -0.9 -2.0 FIG00962345: hypothetical protein compare
Pf1N1B4_3906 -0.9 -1.9 DNA topoisomerase I (EC 5.99.1.2) compare
Pf1N1B4_835 -0.9 -2.0 Trehalose-6-phosphate hydrolase (EC 3.2.1.93) compare
Pf1N1B4_1488 -0.9 -1.4 hypothetical protein compare
Pf1N1B4_4824 -0.9 -1.4 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) compare
Pf1N1B4_6037 -0.9 -2.1 L-asparaginase (EC 3.5.1.1) compare
Pf1N1B4_1819 -0.9 -2.2 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) compare
Pf1N1B4_1568 -0.9 -1.9 Twin-arginine translocation protein TatB compare
Pf1N1B4_901 -0.9 -2.0 hypothetical protein compare
Pf1N1B4_5659 -0.9 -5.4 NfuA Fe-S protein maturation compare
Pf1N1B4_4640 -0.9 -2.9 MoxR-like ATPase in aerotolerance operon compare
Pf1N1B4_358 -0.8 -4.0 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf1N1B4_2008 -0.8 -4.9 Phosphogluconate repressor HexR, RpiR family compare
Pf1N1B4_678 -0.8 -4.4 Pyruvate kinase (EC 2.7.1.40) compare
Pf1N1B4_4304 -0.8 -2.3 hypothetical protein compare
Pf1N1B4_717 -0.8 -3.9 Iron-regulated protein A precursor compare
Pf1N1B4_984 -0.8 -2.4 Alginate biosynthesis protein Alg44 compare
Pf1N1B4_603 -0.8 -2.4 Methylglyoxal synthase (EC 4.2.3.3) compare
Pf1N1B4_2144 -0.8 -4.3 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf1N1B4_2209 -0.8 -4.3 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_2377 -0.8 -3.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf1N1B4_32 -0.8 -2.3 Transcriptional regulator, TetR family compare
Pf1N1B4_1612 -0.8 -1.9 FIG00955429: hypothetical protein compare
Pf1N1B4_3636 -0.8 -1.8 FIG00953562: hypothetical protein compare
Pf1N1B4_5552 -0.8 -1.8 hypothetical protein compare
Pf1N1B4_4494 -0.8 -2.4 hypothetical protein compare
Pf1N1B4_13 -0.8 -2.0 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf1N1B4_2334 -0.8 -2.1 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB compare
Pf1N1B4_275 -0.8 -1.3 Organic hydroperoxide resistance transcriptional regulator compare
Pf1N1B4_328 -0.8 -2.5 Glucosyltransferase (side chain biosynthesis) (EC 2.4.1.-) compare
Pf1N1B4_1838 -0.8 -1.9 FIG00955509: hypothetical protein compare
Pf1N1B4_1569 -0.8 -5.5 Twin-arginine translocation protein TatC compare
Pf1N1B4_3685 -0.8 -2.4 Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) compare
Pf1N1B4_1486 -0.8 -2.6 VgrG protein compare
Pf1N1B4_1668 -0.8 -2.7 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf1N1B4_2491 -0.8 -2.0 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf1N1B4_2225 -0.8 -5.2 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf1N1B4_2114 -0.8 -3.2 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf1N1B4_3939 -0.8 -1.6 FIG00953489: hypothetical protein compare
Pf1N1B4_5509 -0.8 -1.4 hypothetical protein compare
Pf1N1B4_2517 -0.8 -2.6 Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY compare
Pf1N1B4_5997 -0.8 -1.8 Taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_4019 -0.8 -2.1 Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family compare
Pf1N1B4_3986 -0.8 -2.4 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) compare
Pf1N1B4_3152 -0.8 -3.2 LysR family transcriptional regulator PA3398 compare
Pf1N1B4_4857 -0.8 -3.0 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_2171 -0.8 -2.1 Tyrosine recombinase XerC compare
Pf1N1B4_4532 -0.8 -1.9 ClpB protein compare
Pf1N1B4_886 -0.8 -1.5 FIG137478: Hypothetical protein compare
Pf1N1B4_3445 -0.8 -2.0 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf1N1B4_1126 -0.7 -1.7 Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) compare
Pf1N1B4_257 -0.7 -3.1 sensor histidine kinase/response regulator compare
Pf1N1B4_3907 -0.7 -1.5 FIG00953287: hypothetical protein compare
Pf1N1B4_3777 -0.7 -2.6 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p compare
Pf1N1B4_1667 -0.7 -1.7 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf1N1B4_1610 -0.7 -2.2 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_4352 -0.7 -1.7 Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) compare
Pf1N1B4_5282 -0.7 -1.6 Phage protein compare
Pf1N1B4_1870 -0.7 -1.7 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_3356 -0.7 -1.4 Cyclic nucleotide-binding protein compare
Pf1N1B4_5899 -0.7 -1.3 FIG00954746: hypothetical protein compare
Pf1N1B4_4285 -0.7 -1.9 Inositol transport system sugar-binding protein compare
Pf1N1B4_731 -0.7 -1.4 Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like compare
Pf1N1B4_5701 -0.7 -2.2 FIG00955602: hypothetical protein compare
Pf1N1B4_1583 -0.7 -2.0 Histidine ABC transporter, ATP-binding protein (TC 3.A.1) compare
Pf1N1B4_4855 -0.7 -0.9 Response regulator compare
Pf1N1B4_5487 -0.7 -2.4 hypothetical protein compare
Pf1N1B4_4187 -0.7 -2.6 Probable signal peptide protein compare
Pf1N1B4_4366 -0.7 -1.7 hypothetical protein compare
Pf1N1B4_2465 -0.7 -1.5 Two-component response regulator CreB compare
Pf1N1B4_2621 -0.7 -1.1 PspA/IM30 family protein compare
Pf1N1B4_5661 -0.7 -3.8 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf1N1B4_1845 -0.7 -1.4 FIG00954395: hypothetical protein compare
Pf1N1B4_327 -0.7 -1.3 hypothetical protein compare
Pf1N1B4_5624 -0.7 -1.8 Lipase precursor (EC 3.1.1.3) compare
Pf1N1B4_648 -0.7 -6.5 Outer membrane porin, OprD family compare
Pf1N1B4_2087 -0.7 -3.1 Uncharacterized protein ImpH/VasB compare
Pf1N1B4_1004 -0.7 -2.6 Glyoxylate reductase (EC 1.1.1.79) / Glyoxylate reductase (EC 1.1.1.26) / Hydroxypyruvate reductase (EC 1.1.1.81); 2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in carbon source experiments

For carbon source D-Glucose across organisms