Experiment set1IT021 for Caulobacter crescentus NA1000

Compare to:

D-Xylose carbon source

200 most detrimental genes:

  gene name fitness t score description  
CCNA_01848 +2.7 15.2 quinol cytochrome oxidase polypeptide IV compare
CCNA_01712 +2.7 20.5 CopY/TcrY family transcriptional repressor compare
CCNA_01851 +2.6 20.5 quinol cytochrome oxidase polypeptide II compare
CCNA_01850 +2.4 18.0 quinol cytochrome oxidase polypeptide I compare
CCNA_01849 +2.4 12.5 quinol cytochrome oxidase polypeptide III compare
CCNA_01526 +2.3 7.6 flagellar biosynthesis regulatory protein flaF compare
CCNA_01840 +2.3 18.6 MerR-family transcriptional regulator compare
CCNA_03064 +2.3 13.8 PadR-family transcriptional regulator compare
CCNA_00684 +2.3 8.2 anti-sigma factor, ChrR-family compare
CCNA_02957 +2.2 7.8 ArsR-family transcriptional regulator compare
CCNA_03280 +2.2 18.5 pyruvate ferredoxin/flavodoxin oxidoreductase family protein compare
CCNA_02021 +2.1 8.5 hypothetical protein compare
CCNA_R0037 +2.1 6.8 tRNA-Glu compare
CCNA_01684 +2.1 9.8 phenylalanine-4-hydroxylase compare
CCNA_01573 +2.1 11.1 ArsR-family transcriptional regulator compare
CCNA_00028 +2.1 7.2 TonB-dependent receptor compare
CCNA_03030 +2.1 10.1 cytochrome c2 compare
CCNA_02591 +2.1 10.2 glutaredoxin compare
CCNA_03961 +2.0 5.7 hypothetical protein compare
CCNA_01979 +2.0 12.6 LexA repressor compare
CCNA_01094 +2.0 4.1 hypothetical protein compare
CCNA_03287 +2.0 13.1 PadR-family transcriptional regulator compare
CCNA_03271 +2.0 12.9 methionine gamma-lyase compare
CCNA_03289 +2.0 12.3 HicB-family RNA-binding protein compare
CCNA_01790 +2.0 7.2 protein translocase subunit secG compare
CCNA_02103 +2.0 11.1 hypothetical protein compare
CCNA_01593 +2.0 11.5 Xaa-pro aminopeptidase compare
CCNA_01505 +2.0 4.5 hypothetical protein compare
CCNA_01742 +1.9 8.5 hypothetical protein compare
CCNA_01801 +1.9 9.5 hypothetical protein compare
CCNA_03762 +1.9 5.5 acetolactate synthase-related protein compare
CCNA_02025 +1.9 4.7 hypothetical protein compare
CCNA_03989 +1.9 13.6 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_01913 +1.9 11.5 MarR-family transcriptional regulator compare
CCNA_03012 +1.9 9.4 peroxiredoxin compare
CCNA_02619 +1.9 15.1 stomatin/prohibitin-related protein compare
CCNA_03951 +1.9 8.2 hypothetical protein compare
CCNA_01059 +1.9 15.9 S-layer protein rsaA compare
CCNA_01804 +1.9 10.4 glutathione peroxidase compare
CCNA_02980 +1.9 11.9 tryptophan 2,3-dioxygenase compare
CCNA_02617 +1.9 13.1 histidinol-phosphate aminotransferase compare
CCNA_03252 +1.9 13.1 CopY/TcrY-family transcriptional regulator compare
CCNA_02416 +1.9 10.1 DNA-binding protein HU compare
CCNA_01931 +1.9 10.8 TetR-family transcriptional regulator compare
CCNA_02732 +1.9 5.3 hypothetical protein compare
CCNA_01453 +1.8 4.2 electron transport complex I subunit, NADH-ubiquinone oxidoreductase compare
CCNA_01681 +1.8 6.4 RimI-like acetyltransferase compare
CCNA_01847 +1.8 11.9 cytochrome c oxidase assembly protein Surf1 compare
CCNA_02447 +1.8 13.1 PspA/IM30 family regulatory protein compare
CCNA_02133 +1.8 8.8 glucokinase compare
CCNA_00161 +1.8 10.0 hypothetical protein compare
CCNA_02289 +1.8 10.2 MarR/EmrR family transcriptional regulator compare
CCNA_02004 +1.8 3.4 SOS-induced inhibitor of cell division SidA compare
CCNA_03964 +1.8 3.5 hypothetical protein compare
CCNA_00895 +1.8 8.9 hypothetical protein compare
CCNA_02448 +1.8 11.9 hypothetical protein compare
CCNA_R0054 +1.8 3.5 tRNA-Gly compare
CCNA_00846 +1.8 14.8 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase compare
CCNA_00505 +1.8 8.1 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CCNA_02805 +1.8 7.1 hypothetical protein compare
CCNA_01802 +1.7 3.2 hypothetical protein compare
CCNA_02878 +1.7 2.1 hypothetical protein compare
CCNA_01525 +1.7 7.5 flagellar biosynthesis repressor flbT compare
CCNA_03129 +1.7 11.5 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_01528 +1.7 9.6 flagellin fljK compare
CCNA_03123 +1.7 10.7 ArsR-family transcriptional regulator compare
CCNA_01541 +1.7 11.7 LysR-family transcriptional regulator compare
CCNA_03936 +1.7 5.2 hypothetical protein compare
CCNA_02339 +1.7 10.1 methyltransferase compare
CCNA_03062 +1.7 10.6 cell wall hydrolase family protein compare
CCNA_03214 +1.7 8.3 hypothetical protein compare
CCNA_00939 +1.7 6.6 MarR-family transcriptional regulator compare
CCNA_03515 +1.7 8.9 hypothetical protein compare
CCNA_02644 +1.7 4.5 cell division protein FtsL compare
CCNA_03325 +1.7 5.7 hypothetical protein compare
CCNA_01619 +1.7 8.5 NYN domain protein compare
CCNA_00931 +1.7 10.7 GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase compare
CCNA_00527 +1.7 9.0 hypothetical protein compare
CCNA_03479 +1.7 8.2 MarR-family transcriptional regulator compare
CCNA_03893 +1.7 3.7 hypothetical protein compare
CCNA_00756 +1.7 3.9 hypothetical protein compare
CCNA_00264 +1.7 10.4 C4-dicarboxylate transport protein compare
CCNA_03108 +1.6 12.1 TonB-dependent outer membrane receptor compare
CCNA_01728 +1.6 8.1 short chain dehydrogenase compare
CCNA_03959 +1.6 1.7 hypothetical protein compare
CCNA_01751 +1.6 6.6 aminodeoxychorismate lyase compare
CCNA_00447 +1.6 8.7 chemotaxis protein cheD compare
CCNA_02026 +1.6 3.2 hypothetical protein compare
CCNA_03524 +1.6 9.4 di-/tripeptide transporter compare
CCNA_01186 +1.6 8.2 hypothetical protein compare
CCNA_00929 +1.6 12.1 Riboflavin-specific deaminase family protein compare
CCNA_01393 +1.6 12.1 soluble lytic murein transglycosylase compare
CCNA_00919 +1.6 4.4 hypothetical protein compare
CCNA_01655 +1.6 7.2 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_00769 +1.6 8.0 TetR family transcriptional regulator compare
CCNA_00518 +1.6 10.0 LSU ribosomal protein L25P compare
CCNA_00705 +1.6 5.6 hypothetical protein compare
CCNA_02028 +1.6 2.0 NTF2 superfamily protein compare
CCNA_02073 +1.6 5.3 cupin domain transcriptional regulator compare
CCNA_01361 +1.6 2.9 PepSY superfamily protein compare
CCNA_00946 +1.6 7.9 Basal-body rod modification protein FlgD compare
CCNA_01181 +1.6 8.3 hypothetical protein compare
CCNA_01752 +1.6 9.2 YicC-family protein compare
CCNA_01968 +1.6 5.1 pentapeptide repeats containing protein compare
CCNA_03372 +1.6 4.2 bacterioferritin-associated ferredoxin compare
CCNA_00441 +1.6 7.1 chemotaxis receiver domain protein cheYI compare
CCNA_01679 +1.6 9.6 succinylglutamic semialdehyde dehydrogenase compare
CCNA_02040 +1.6 2.9 phosphoserine phosphatase compare
CCNA_01193 +1.6 11.3 amylosucrase compare
CCNA_02728 +1.6 7.5 hypothetical protein compare
CCNA_01371 +1.5 4.8 hypothetical protein compare
CCNA_01690 +1.5 4.3 MAPEG family membrane protein compare
CCNA_03689 +1.5 10.6 alanine dehydrogenase compare
CCNA_01780 +1.5 10.8 exopolyphosphatase compare
CCNA_02616 +1.5 9.3 4-hydroxyphenylpyruvate dioxygenase compare
CCNA_00947 +1.5 11.3 flagellar hook protein FlgE compare
CCNA_03089 +1.5 7.3 hypothetical protein compare
CCNA_02910 +1.5 12.1 TonB-dependent receptor compare
CCNA_02646 +1.5 2.6 cell division protein MraZ compare
CCNA_02854 +1.5 5.8 two-component response regulator compare
CCNA_01926 +1.5 8.0 GGDEF diguanylate cyclase DgcB compare
CCNA_03612 +1.5 7.8 HTH XRE-family transcriptional regulator compare
CCNA_01827 +1.5 6.3 cobyric acid synthase CobQ compare
CCNA_01678 +1.5 8.0 arginine N-succinyltransferase, beta chain compare
CCNA_03808 +1.5 9.3 organic solvent resistance transport system Ttg2C protein compare
CCNA_02942 +1.5 4.8 nucleoside-diphosphate-sugar epimerase compare
CCNA_00998 +1.5 7.1 ROS/MUCR transcriptional regulator compare
CCNA_01942 +1.5 6.1 Rrf2 family protein compare
CCNA_02567 +1.5 10.2 sensory transduction histidine kinase pleC compare
CCNA_01415 +1.5 10.4 methyltransferase compare
CCNA_03952 +1.5 5.7 hypothetical protein compare
CCNA_03863 +1.4 3.8 hypothetical protein compare
CCNA_01001 +1.4 8.1 ribokinase compare
CCNA_03105 +1.4 5.5 DnaJ domain protein compare
CCNA_02976 +1.4 7.1 MCP-signal associated domain protein compare
CCNA_01531 +1.4 10.2 acetyltransferase compare
CCNA_01608 +1.4 6.2 TetR-family transcriptional regulator compare
CCNA_03215 +1.4 8.7 ARO8 family aminotransferase/HTH DNA-binding protein compare
CCNA_02000 +1.4 1.7 SSU ribosomal protein S2P compare
CCNA_02379 +1.4 7.8 hypothetical protein compare
CCNA_00954 +1.4 9.9 AAA-family response regulator flbD compare
CCNA_02287 +1.4 7.8 TetR-family transcriptional regulator compare
CCNA_00847 +1.4 7.8 leucine-responsive regulatory protein compare
CCNA_00944 +1.4 6.8 flagellar hook length determination protein compare
CCNA_02475 +1.4 10.1 transcriptional regulator vanR compare
CCNA_02760 +1.4 2.7 hypothetical protein compare
CCNA_03805 +1.4 9.2 PadR-family transcriptional regulator compare
CCNA_00153 +1.4 5.4 adenine nucleotide exchange factor GrpE compare
CCNA_02841 +1.4 4.2 hypothetical protein compare
CCNA_01826 +1.4 7.5 vitamin B12 receptor compare
CCNA_01173 +1.4 7.0 chorismate mutase compare
CCNA_00834 +1.4 6.0 flagellin FljM compare
CCNA_01533 +1.4 5.9 hypothetical protein compare
CCNA_03043 +1.4 4.4 type IV pilin protein pilA compare
CCNA_00699 +1.4 2.1 LSU ribosomal protein L28P compare
CCNA_01964 +1.4 4.6 NADH dehydrogenase compare
CCNA_01008 +1.4 9.6 urocanate hydratase compare
CCNA_02125 +1.4 10.2 polar development protein podJ compare
CCNA_00803 +1.4 5.7 chemotaxis protein cheW compare
CCNA_03938 +1.4 3.9 hypothetical protein compare
CCNA_01406 +1.4 6.8 metal-dependent hydrolase compare
CCNA_03107 +1.3 6.6 cytidine deaminase compare
CCNA_01339 +1.3 5.4 ArsR-family transcriptional regulator compare
CCNA_01949 +1.3 3.7 bactofilin A BacA compare
CCNA_00675 +1.3 5.1 VapC-like PIN domain ribonuclease compare
CCNA_00446 +1.3 6.4 chemotaxis receiver domain protein cheYII compare
CCNA_02363 +1.3 6.8 hypothetical protein compare
CCNA_00750 +1.3 8.7 FeaR-family transcriptional regulator compare
CCNA_01680 +1.3 8.1 succinylarginine dihydrolase compare
CCNA_02338 +1.3 7.8 hypothetical protein compare
CCNA_02467 +1.3 7.6 polyisoprenylphosphate hexose-1-phosphotransferase pssZ compare
CCNA_00682 +1.3 6.4 MarR-family transcriptional regulator compare
CCNA_00162 +1.3 6.0 hypothetical protein compare
CCNA_03371 +1.3 4.3 bacterioferritin compare
CCNA_01530 +1.3 8.5 flagellin FljJ compare
CCNA_00448 +1.3 7.3 cheU protein compare
CCNA_02367 +1.3 9.3 CelR-family transcriptional regulator compare
CCNA_02750 +1.3 6.9 ABC transporter permease protein compare
CCNA_01580 +1.3 5.9 M15 superfamily membrane peptidase compare
CCNA_03156 +1.3 5.8 putative periplasmic protein compare
CCNA_01242 +1.3 11.5 amino acid permease compare
CCNA_02151 +1.3 4.5 exodeoxyribonuclease VII small subunit compare
CCNA_02330 +1.3 5.8 hypothetical protein compare
CCNA_03379 +1.3 2.0 Cro/CI family transcriptional regulator compare
CCNA_01813 +1.3 7.2 tRNA-dihydrouridine synthase compare
CCNA_02341 +1.3 7.9 small heat shock protein compare
CCNA_02534 +1.3 2.4 hypothetical protein compare
CCNA_00945 +1.3 6.5 chemotaxis protein MotD compare
CCNA_03963 +1.3 4.1 hypothetical protein compare
CCNA_01405 +1.3 5.5 GIY-YIG domain protein compare
CCNA_00031 +1.3 6.6 toxin protein VapC compare
CCNA_02134 +1.3 9.2 phosphogluconate dehydratase compare
CCNA_02324 +1.3 7.8 heat shock protein 33 hsp33 compare
CCNA_02036 +1.3 2.6 DNA-binding protein HU compare
CCNA_00930 +1.3 8.7 riboflavin synthase alpha chain compare
CCNA_03514 +1.3 7.3 cytochrome c oxidase assembly protein ctaG compare
CCNA_02316 +1.3 7.1 hypothetical protein compare
CCNA_01235 +1.3 6.6 AcrR-family transcriptional regulator compare
CCNA_01677 +1.3 6.2 carboxypeptidase G2 precursor compare
CCNA_00999 +1.3 5.1 PAS-family motility and cell cycle regulatory protein MopJ compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source D-Xylose in Caulobacter crescentus NA1000

For carbon source D-Xylose across organisms