Experiment set1IT021 for Phocaeicola vulgatus CL09T03C04

Compare to:

D-Galactose 20 mM carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS14730 -7.4 -7.2 threonine synthase compare
HMPREF1058_RS08830 -7.4 -7.2 pyrroline-5-carboxylate reductase compare
HMPREF1058_RS12675 -7.3 -3.0 DUF488 family protein compare
HMPREF1058_RS15885 -7.2 -5.0 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1058_RS09675 -7.0 -4.0 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS15660 -6.8 -11.3 galactokinase compare
HMPREF1058_RS07185 -6.5 -7.7 anthranilate phosphoribosyltransferase compare
HMPREF1058_RS14550 -6.5 -8.9 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS08640 -6.5 -2.2 acetylornithine carbamoyltransferase compare
HMPREF1058_RS14920 -6.5 -9.9 serine dehydratase subunit alpha family protein compare
HMPREF1058_RS12780 -6.4 -11.5 M20 family metallo-hydrolase compare
HMPREF1058_RS10075 -6.4 -10.6 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1058_RS09585 -6.3 -15.4 argininosuccinate lyase compare
HMPREF1058_RS08835 -6.3 -8.5 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS07200 -6.3 -9.6 tryptophan synthase subunit alpha compare
HMPREF1058_RS14545 -6.2 -10.4 2-isopropylmalate synthase compare
HMPREF1058_RS15875 -6.2 -4.3 histidinol dehydrogenase compare
HMPREF1058_RS07190 -6.1 -6.0 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS14610 -6.1 -14.3 adenylosuccinate synthase compare
HMPREF1058_RS14720 -6.0 -14.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1058_RS12490 -6.0 -3.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS15870 -6.0 -8.2 ATP phosphoribosyltransferase compare
HMPREF1058_RS14560 -6.0 -10.0 2-isopropylmalate synthase compare
HMPREF1058_RS08840 -5.9 -12.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS14725 -5.9 -10.6 cofactor-independent phosphoglycerate mutase compare
HMPREF1058_RS14565 -5.9 -13.7 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS14795 -5.9 -4.1 prephenate dehydratase compare
HMPREF1058_RS11040 -5.8 -6.7 polysaccharide deacetylase family protein compare
HMPREF1058_RS12115 -5.8 -11.4 acetylglutamate kinase compare
HMPREF1058_RS14770 -5.8 -7.9 prephenate dehydrogenase compare
HMPREF1058_RS11730 -5.7 -2.4 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS08645 -5.7 -12.8 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1058_RS08845 -5.7 -10.8 argininosuccinate synthase compare
HMPREF1058_RS03800 -5.7 -5.6 serine hydroxymethyltransferase compare
HMPREF1058_RS14785 -5.7 -5.5 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS07170 -5.7 -9.5 tryptophan synthase subunit beta compare
HMPREF1058_RS07195 -5.7 -4.2 phosphoribosylanthranilate isomerase compare
HMPREF1058_RS15075 -5.6 -10.8 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS02220 -5.6 -5.5 branched-chain amino acid aminotransferase compare
HMPREF1058_RS02115 -5.6 -12.0 NADP-specific glutamate dehydrogenase compare
HMPREF1058_RS10820 -5.5 -14.8 4-phosphoerythronate dehydrogenase PdxB compare
HMPREF1058_RS14790 -5.5 -11.2 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS16815 -5.5 -7.6 dihydroxy-acid dehydratase compare
HMPREF1058_RS11270 -5.5 -7.6 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS15880 -5.5 -11.2 histidinol-phosphate transaminase compare
HMPREF1058_RS08650 -5.5 -10.5 glutamate 5-kinase compare
HMPREF1058_RS06175 -5.5 -3.8 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS07175 -5.4 -9.8 anthranilate synthase component I family protein compare
HMPREF1058_RS17885 -5.4 -14.0 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
HMPREF1058_RS08850 -5.4 -11.2 N-acetyltransferase compare
HMPREF1058_RS08325 -5.4 -5.9 pyridoxine 5'-phosphate synthase compare
HMPREF1058_RS06165 -5.4 -6.7 imidazole glycerol phosphate synthase subunit HisH compare
HMPREF1058_RS16760 -5.4 -3.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS00700 -5.3 -10.9 DUF4831 family protein compare
HMPREF1058_RS13795 -5.3 -10.2 DUF4954 family protein compare
HMPREF1058_RS06170 -5.3 -7.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1058_RS06180 -5.2 -6.2 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1058_RS16835 -5.2 -6.2 ketol-acid reductoisomerase compare
HMPREF1058_RS08025 -5.2 -6.2 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS03910 -5.2 -7.9 alpha amylase C-terminal domain-containing protein compare
HMPREF1058_RS12105 -5.1 -4.5 shikimate kinase compare
HMPREF1058_RS10080 -5.1 -13.6 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS16820 -5.1 -8.5 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS07955 -5.0 -9.7 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS17940 -5.0 -9.5 alpha-amylase compare
HMPREF1058_RS14490 -4.9 -11.1 S9 family peptidase compare
HMPREF1058_RS11310 -4.9 -6.7 undecaprenyl-diphosphate phosphatase compare
HMPREF1058_RS03000 -4.8 -7.4 IMP dehydrogenase compare
HMPREF1058_RS17080 -4.8 -2.2 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS14555 -4.8 -2.2 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS06195 -4.8 -6.6 diaminopimelate decarboxylase compare
HMPREF1058_RS05780 -4.8 -5.7 PD40 domain-containing protein compare
HMPREF1058_RS15740 -4.8 -4.0 hypothetical protein compare
HMPREF1058_RS00590 -4.7 -4.3 hypothetical protein compare
HMPREF1058_RS17975 -4.7 -10.5 ATP-dependent dethiobiotin synthetase BioD compare
HMPREF1058_RS01745 -4.7 -3.2 PorT family protein compare
HMPREF1058_RS10995 -4.7 -7.8 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS14930 -4.6 -16.4 AraC family transcriptional regulator compare
HMPREF1058_RS06225 -4.6 -3.2 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1058_RS17935 -4.6 -14.2 glycosyltransferase compare
HMPREF1058_RS12810 -4.6 -10.4 VanZ family protein compare
HMPREF1058_RS11490 -4.5 -3.1 redox-regulated ATPase YchF compare
HMPREF1058_RS11205 -4.5 -2.1 radical SAM protein compare
HMPREF1058_RS06310 -4.4 -3.1 UDP-glucose 4-epimerase GalE compare
HMPREF1058_RS04045 -4.4 -4.3 tetratricopeptide repeat protein compare
HMPREF1058_RS04300 -4.4 -4.3 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS00560 -4.4 -3.0 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS08535 -4.4 -2.5 elongation factor P compare
HMPREF1058_RS02170 -4.3 -8.3 hypothetical protein compare
HMPREF1058_RS17050 -4.3 -5.9 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1058_RS12805 -4.3 -9.4 RNA polymerase sigma factor compare
HMPREF1058_RS04295 -4.3 -4.2 3-phosphoglycerate dehydrogenase compare
HMPREF1058_RS04070 -4.3 -4.1 hypothetical protein compare
HMPREF1058_RS14590 -4.3 -2.7 AraC family transcriptional regulator compare
HMPREF1058_RS18400 -4.2 -5.9 RidA family protein compare
HMPREF1058_RS03075 -4.2 -8.0 DNA helicase RecQ compare
HMPREF1058_RS17955 -4.2 -10.5 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
HMPREF1058_RS07040 -4.2 -15.1 tetratricopeptide repeat protein compare
HMPREF1058_RS07960 -4.2 -16.4 response regulator compare
HMPREF1058_RS09685 -4.1 -15.5 tetratricopeptide repeat protein compare
HMPREF1058_RS17155 -4.1 -2.8 dCMP deaminase family protein compare
HMPREF1058_RS07180 -4.1 -5.1 aminodeoxychorismate/anthranilate synthase component II compare
HMPREF1058_RS04080 -4.1 -4.9 AAA family ATPase compare
HMPREF1058_RS03770 -4.1 -6.2 RNA polymerase sigma factor compare
HMPREF1058_RS17040 -4.1 -4.0 NTP transferase domain-containing protein compare
HMPREF1058_RS05145 -4.1 -7.4 ATP-binding protein compare
HMPREF1058_RS14835 -4.0 -4.8 single-stranded-DNA-specific exonuclease RecJ compare
HMPREF1058_RS06160 -4.0 -6.4 formyltetrahydrofolate deformylase compare
HMPREF1058_RS17970 -3.9 -6.1 malonyl-ACP O-methyltransferase BioC compare
HMPREF1058_RS04075 -3.9 -3.6 DUF58 domain-containing protein compare
HMPREF1058_RS06190 -3.9 -5.3 aspartate kinase compare
HMPREF1058_RS07670 -3.8 -2.7 HAMP domain-containing histidine kinase compare
HMPREF1058_RS17035 -3.8 -8.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1058_RS03295 -3.8 -1.3 sulfur carrier protein ThiS compare
HMPREF1058_RS04065 -3.8 -2.2 VWA domain-containing protein compare
HMPREF1058_RS17950 -3.8 -6.4 biotin synthase BioB compare
HMPREF1058_RS17960 -3.7 -8.1 8-amino-7-oxononanoate synthase compare
HMPREF1058_RS13350 -3.7 -3.6 Trk system potassium transporter TrkA compare
HMPREF1058_RS16240 -3.7 -5.6 o-succinylbenzoate synthase compare
HMPREF1058_RS03245 -3.7 -1.7 thiamine phosphate synthase compare
HMPREF1058_RS03085 -3.6 -2.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS07440 -3.6 -4.3 aspartate--ammonia ligase compare
HMPREF1058_RS06600 -3.6 -4.2 DedA family protein compare
HMPREF1058_RS16245 -3.6 -4.2 1,4-dihydroxy-2-naphthoyl-CoA synthase compare
HMPREF1058_RS04050 -3.6 -3.5 protein BatD compare
HMPREF1058_RS03510 -3.6 -6.9 YebC/PmpR family DNA-binding transcriptional regulator compare
HMPREF1058_RS04370 -3.6 -3.5 agmatine deiminase family protein compare
HMPREF1058_RS16260 -3.5 -5.3 hotdog fold thioesterase compare
HMPREF1058_RS04365 -3.5 -14.0 translocation/assembly module TamB compare
HMPREF1058_RS00600 -3.5 -6.2 diaminopimelate dehydrogenase compare
HMPREF1058_RS14005 -3.5 -2.4 3-dehydroquinate synthase compare
HMPREF1058_RS16825 -3.5 -7.3 acetolactate synthase small subunit compare
HMPREF1058_RS01640 -3.4 -14.7 BamA/TamA family outer membrane protein compare
HMPREF1058_RS06080 -3.4 -4.0 glutamine synthetase III compare
HMPREF1058_RS15435 -3.4 -10.5 hypothetical protein compare
HMPREF1058_RS10955 -3.4 -7.2 phosphatase PAP2 family protein compare
HMPREF1058_RS02135 -3.4 -12.9 phosphoenolpyruvate synthase compare
HMPREF1058_RS09590 -3.3 -6.3 hypothetical protein compare
HMPREF1058_RS12110 -3.3 -10.2 biosynthetic arginine decarboxylase compare
HMPREF1058_RS17205 -3.3 -2.1 DUF4199 domain-containing protein compare
HMPREF1058_RS15920 -3.3 -2.4 hypothetical protein compare
HMPREF1058_RS16730 -3.3 -2.3 chorismate synthase compare
HMPREF1058_RS05140 -3.2 -3.2 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS18695 -3.2 -3.1 F0F1 ATP synthase subunit gamma compare
HMPREF1058_RS09735 -3.2 -9.6 hypothetical protein compare
HMPREF1058_RS15520 -3.1 -4.2 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1058_RS13970 -3.1 -2.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS15380 -3.1 -9.1 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1058_RS17060 -3.1 -8.6 HAD family hydrolase compare
HMPREF1058_RS06560 -3.1 -6.8 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1058_RS17965 -3.0 -1.4 DUF452 family protein compare
HMPREF1058_RS14830 -3.0 -2.2 RecQ family ATP-dependent DNA helicase compare
HMPREF1058_RS09750 -3.0 -8.7 glycosyltransferase compare
HMPREF1058_RS06610 -3.0 -6.0 GDP-L-fucose synthase compare
HMPREF1058_RS09730 -2.9 -8.6 LicD family protein compare
HMPREF1058_RS01650 -2.9 -5.2 hypothetical protein compare
HMPREF1058_RS00595 -2.9 -4.6 Holliday junction branch migration protein RuvA compare
HMPREF1058_RS18265 -2.9 -2.8 aspartate 1-decarboxylase compare
HMPREF1058_RS11890 -2.9 -4.3 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1058_RS18205 -2.8 -7.0 ferrous iron transport protein B compare
HMPREF1058_RS11535 -2.8 -5.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HMPREF1058_RS15850 -2.8 -9.1 transglycosylase SLT domain-containing protein compare
HMPREF1058_RS17945 -2.8 -5.2 hypothetical protein compare
HMPREF1058_RS20485 -2.8 -1.5 mobilization protein compare
HMPREF1058_RS10255 -2.8 -2.0 hypothetical protein compare
HMPREF1058_RS16755 -2.8 -2.9 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HMPREF1058_RS02110 -2.7 -12.9 NADP-dependent malic enzyme compare
HMPREF1058_RS02750 -2.7 -1.9 BamA/TamA family outer membrane protein compare
HMPREF1058_RS16625 -2.7 -8.3 hypothetical protein compare
HMPREF1058_RS13655 -2.7 -13.0 cardiolipin synthase compare
HMPREF1058_RS16845 -2.7 -1.9 SurA N-terminal domain-containing protein compare
HMPREF1058_RS15665 -2.7 -3.2 MFS transporter compare
HMPREF1058_RS08855 -2.7 -4.0 arginine repressor compare
HMPREF1058_RS12525 -2.7 -6.1 Na/Pi cotransporter family protein compare
HMPREF1058_RS17815 -2.7 -7.7 MFS transporter compare
HMPREF1058_RS04035 -2.6 -2.4 hypothetical protein compare
HMPREF1058_RS15855 -2.6 -6.3 uridine kinase compare
HMPREF1058_RS09445 -2.6 -1.4 tyrosine-type recombinase/integrase compare
HMPREF1058_RS17170 -2.6 -7.7 Crp/Fnr family transcriptional regulator compare
HMPREF1058_RS15375 -2.6 -2.3 DUF4369 domain-containing protein compare
HMPREF1058_RS02755 -2.6 -1.8 translocation/assembly module TamB domain-containing protein compare
HMPREF1058_RS10920 -2.6 -2.5 viroplasmin family protein compare
HMPREF1058_RS15585 -2.6 -7.7 transporter substrate-binding domain-containing protein compare
HMPREF1058_RS13910 -2.6 -3.8 nucleoside deaminase compare
HMPREF1058_RS17075 -2.5 -11.8 inositol-3-phosphate synthase compare
HMPREF1058_RS20790 -2.5 -1.4 hypothetical protein compare
HMPREF1058_RS03530 -2.5 -1.6 PD-(D/E)XK nuclease family protein compare
HMPREF1058_RS01230 -2.5 -6.5 redoxin domain-containing protein compare
HMPREF1058_RS05930 -2.5 -5.9 MFS transporter compare
HMPREF1058_RS17175 -2.5 -4.5 MarC family protein compare
HMPREF1058_RS10495 -2.4 -1.5 rhomboid family intramembrane serine protease compare
HMPREF1058_RS15975 -2.4 -6.2 saccharopine dehydrogenase family protein compare
HMPREF1058_RS03535 -2.4 -1.8 UvrD-helicase domain-containing protein compare
HMPREF1058_RS17775 -2.4 -5.2 hypothetical protein compare
HMPREF1058_RS16620 -2.4 -9.3 GGGtGRT protein compare
HMPREF1058_RS16235 -2.4 -6.1 AMP-binding protein compare
HMPREF1058_RS01995 -2.4 -3.1 hypothetical protein compare
HMPREF1058_RS03970 -2.4 -1.6 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1058_RS07090 -2.3 -1.7 hypothetical protein compare
HMPREF1058_RS15395 -2.3 -1.5 dihydroorotase compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source D-Galactose in Phocaeicola vulgatus CL09T03C04

For carbon source D-Galactose across organisms