Experiment set1IT021 for Burkholderia phytofirmans PsJN

Compare to:

L-Glutamine carbon source

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS19355 +3.5 28.1 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase compare
BPHYT_RS35310 +2.0 3.6 GCN5 family N-acetyltransferase compare
BPHYT_RS03730 +1.7 3.9 transcriptional repressor NrdR compare
BPHYT_RS05730 +1.3 3.7 hypothetical protein compare
BPHYT_RS02905 +1.3 10.2 RNA polymerase subunit sigma-54 compare
BPHYT_RS03210 +1.2 7.1 cardiolipin synthetase compare
BPHYT_RS03155 +1.2 1.7 histidine triad (HIT) protein compare
BPHYT_RS01795 +1.2 7.2 histidine kinase compare
BPHYT_RS27560 +1.2 1.5 histidine kinase compare
BPHYT_RS14755 +1.1 4.4 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS30825 +1.1 2.5 extradiol dioxygenase compare
BPHYT_RS36220 +1.1 1.7 hypothetical protein compare
BPHYT_RS05610 +1.1 5.0 DNA-cytosine methyltransferase compare
BPHYT_RS33615 +1.0 3.5 decarboxylase compare
BPHYT_RS21470 +1.0 2.8 6-hydroxynicotinate reductase compare
BPHYT_RS10475 +1.0 1.7 mammalian cell entry protein compare
BPHYT_RS23030 +1.0 1.5 gluconate 2-dehydrogenase compare
BPHYT_RS02765 +1.0 2.1 cytochrome BD oxidase subunit I compare
BPHYT_RS05905 +1.0 1.3 hypothetical protein compare
BPHYT_RS31840 +0.9 2.6 anhydrase compare
BPHYT_RS13320 +0.9 1.2 allantoate amidohydrolase compare
BPHYT_RS15645 +0.9 4.3 nicotinate-nucleotide pyrophosphorylase compare
BPHYT_RS01790 +0.9 7.2 LuxR family transcriptional regulator compare
BPHYT_RS00980 +0.9 1.2 GCN5 family acetyltransferase compare
BPHYT_RS02480 +0.9 1.3 alkaline phosphatase compare
BPHYT_RS24690 +0.9 5.1 ionic transporter y4hA compare
BPHYT_RS25780 +0.9 1.2 DeoR faimly transcriptional regulator compare
BPHYT_RS14250 +0.9 4.5 glycosyl transferase compare
BPHYT_RS02885 +0.9 5.4 glmZ(sRNA)-inactivating NTPase compare
BPHYT_RS12640 +0.9 4.9 phosphoesterase compare
BPHYT_RS16335 +0.9 1.2 membrane protein compare
BPHYT_RS10470 +0.9 2.2 hypothetical protein compare
BPHYT_RS25770 +0.8 1.4 hypothetical protein compare
BPHYT_RS08570 +0.8 4.4 arginyl-tRNA-protein transferase compare
BPHYT_RS10040 +0.8 0.9 hypothetical protein compare
BPHYT_RS12550 +0.8 1.1 GTP-binding protein HflX compare
BPHYT_RS08415 +0.8 1.9 hypothetical protein compare
BPHYT_RS18895 +0.8 2.5 flagellar basal body rod protein FlgB compare
BPHYT_RS08615 +0.8 1.2 hypothetical protein compare
BPHYT_RS26465 +0.8 1.1 metallophosphoesterase compare
BPHYT_RS25000 +0.8 2.2 MFS transporter compare
BPHYT_RS04675 +0.8 3.9 protein-L-isoaspartate O-methyltransferase compare
BPHYT_RS32860 +0.8 1.1 hypothetical protein compare
BPHYT_RS26010 +0.8 2.1 ABC transporter substrate-binding protein compare
BPHYT_RS27655 +0.8 1.4 potassium transporter compare
BPHYT_RS28965 +0.8 1.3 hypothetical protein compare
BPHYT_RS32595 +0.8 2.7 hypothetical protein compare
BPHYT_RS02965 +0.8 2.8 membrane protein compare
BPHYT_RS14070 +0.8 1.9 hypothetical protein compare
BPHYT_RS13080 +0.8 1.5 hypothetical protein compare
BPHYT_RS22885 +0.8 2.4 hypothetical protein compare
BPHYT_RS22400 +0.8 1.5 hypothetical protein compare
BPHYT_RS35400 +0.8 1.4 ABC transporter compare
BPHYT_RS17630 +0.8 3.1 ubiquinol-cytochrome C reductase compare
BPHYT_RS07140 +0.8 2.2 hypothetical protein compare
BPHYT_RS30800 +0.7 1.7 MFS transporter compare
BPHYT_RS10540 +0.7 1.2 secretion protein compare
BPHYT_RS25470 +0.7 0.8 alkylhydroperoxidase compare
BPHYT_RS11930 +0.7 2.0 3-hydroxybutyrate dehydrogenase compare
BPHYT_RS18890 +0.7 2.9 flagellar basal body rod protein FlgC compare
BPHYT_RS25160 +0.7 1.5 NAD/NADP-dependent betaine aldehyde dehydrogenase compare
BPHYT_RS18825 +0.7 2.5 flagellar biosynthesis protein FliP compare
BPHYT_RS03205 +0.7 3.4 dihydroneopterin triphosphate pyrophosphatase compare
BPHYT_RS08600 +0.7 1.3 hypothetical protein compare
BPHYT_RS06080 +0.7 1.0 endonuclease IV compare
BPHYT_RS11170 +0.7 1.2 hypothetical protein compare
BPHYT_RS35575 +0.7 2.4 transcriptional regulator compare
BPHYT_RS06260 +0.7 3.3 MFS transporter compare
BPHYT_RS25285 +0.7 1.8 AraC family transcriptional regulator compare
BPHYT_RS22835 +0.7 1.1 flagellar motor protein MotA compare
BPHYT_RS30610 +0.7 1.5 major facilitator transporter compare
BPHYT_RS22325 +0.7 2.2 histidine kinase compare
BPHYT_RS30880 +0.7 2.2 peptidase S13 compare
BPHYT_RS14255 +0.7 5.2 ABC transporter compare
BPHYT_RS35785 +0.7 2.2 glucose-1-dehydrogenase compare
BPHYT_RS05655 +0.7 3.3 membrane protein compare
BPHYT_RS04095 +0.7 0.8 SAM-dependent methyltransferase PhcB compare
BPHYT_RS33400 +0.7 1.7 magnesium transporter CorA compare
BPHYT_RS08190 +0.7 1.3 type II secretion system protein compare
BPHYT_RS28860 +0.7 0.9 haloacid dehalogenase compare
BPHYT_RS29950 +0.7 1.5 hypothetical protein compare
BPHYT_RS25005 +0.7 1.0 FMN reductase compare
BPHYT_RS03195 +0.7 4.9 membrane protein compare
BPHYT_RS18945 +0.7 4.0 flagellar biosynthesis protein FlhB compare
BPHYT_RS18805 +0.7 5.1 flagellar basal body protein FliL compare
BPHYT_RS33785 +0.7 2.6 glycogen debranching protein compare
BPHYT_RS35700 +0.7 2.9 beta-lactamase domain-containing protein compare
BPHYT_RS31015 +0.7 1.7 3-deoxy-manno-octulosonate cytidylyltransferase 2 compare
BPHYT_RS18780 +0.7 2.8 flagellar motor switch protein FliG compare
BPHYT_RS20115 +0.7 1.9 transcriptional regulator compare
BPHYT_RS15640 +0.7 4.5 L-aspartate oxidase compare
BPHYT_RS27065 +0.7 1.1 hypothetical protein compare
BPHYT_RS05250 +0.7 3.6 phage abortive infection protein compare
BPHYT_RS27830 +0.7 1.6 universal stress protein A compare
BPHYT_RS34210 +0.7 2.8 2,4-diketo-3-deoxy-L-rhamnonate hydrolase (EC 3.7.1.-) (from data) compare
BPHYT_RS13130 +0.7 1.3 metallophosphatase compare
BPHYT_RS15775 +0.7 1.6 peptide ABC transporter permease compare
BPHYT_RS15835 +0.7 2.7 RNA polymerase subunit sigma24 compare
BPHYT_RS06710 +0.7 1.0 hypothetical protein compare
BPHYT_RS16815 +0.7 1.4 ureidoglycolate hydrolase compare
BPHYT_RS10875 +0.7 1.8 transporter compare
BPHYT_RS32055 +0.7 2.1 hypothetical protein compare
BPHYT_RS20155 +0.7 1.4 hypothetical protein compare
BPHYT_RS20000 +0.7 1.0 serine/threonine protein kinase compare
BPHYT_RS01035 +0.7 2.1 cyanate hydratase compare
BPHYT_RS31060 +0.7 0.9 capsular polysaccharide biosynthesis protein compare
BPHYT_RS34235 +0.7 1.6 putative accessory domain for L-fuconate/L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) (from data) compare
BPHYT_RS03410 +0.6 1.8 queuine tRNA-ribosyltransferase compare
BPHYT_RS26965 +0.6 1.0 L-lactate dehydrogenase, LldG subunit (from data) compare
BPHYT_RS35405 +0.6 2.0 hypothetical protein compare
BPHYT_RS25450 +0.6 0.9 membrane protein compare
BPHYT_RS09735 +0.6 1.4 glycosyl transferase compare
BPHYT_RS34155 +0.6 1.3 3-hydroxybutyryl-CoA dehydrogenase compare
BPHYT_RS35980 +0.6 3.0 hypothetical protein compare
BPHYT_RS22090 +0.6 2.6 hypothetical protein compare
BPHYT_RS26280 +0.6 1.5 hypothetical protein compare
BPHYT_RS12295 +0.6 1.8 LysR family transcriptional regulator compare
BPHYT_RS19335 +0.6 2.4 hypothetical protein compare
BPHYT_RS18835 +0.6 1.1 flagellar biosynthesis protein FliR compare
BPHYT_RS29890 +0.6 1.6 LysR family transcriptional regulator compare
BPHYT_RS13285 +0.6 1.4 amino acid ABC transporter ATP-binding protein compare
BPHYT_RS18775 +0.6 4.7 flagellar M-ring protein FliF compare
BPHYT_RS18810 +0.6 4.1 flagellar motor switch protein FliM compare
BPHYT_RS21215 +0.6 3.0 Crp/Fnr family transcriptional regulator compare
BPHYT_RS20725 +0.6 0.9 histidine kinase compare
BPHYT_RS14735 +0.6 0.9 hypothetical protein compare
BPHYT_RS23705 +0.6 4.7 hypothetical protein compare
BPHYT_RS08900 +0.6 3.8 phosphate starvation protein PhoH compare
BPHYT_RS29165 +0.6 2.4 hypothetical protein compare
BPHYT_RS22250 +0.6 2.0 D-amino acid dehydrogenase compare
BPHYT_RS23860 +0.6 2.7 malonic semialdehyde reductase compare
BPHYT_RS36470 +0.6 1.3 hypothetical protein compare
BPHYT_RS14475 +0.6 2.4 HAD family hydrolase compare
BPHYT_RS34300 +0.6 1.9 major facilitator transporter compare
BPHYT_RS07380 +0.6 1.2 membrane protein compare
BPHYT_RS01455 +0.6 0.7 peptide deformylase compare
BPHYT_RS30415 +0.6 1.1 AraC family transcriptional regulator compare
BPHYT_RS10980 +0.6 1.4 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
BPHYT_RS10395 +0.6 1.2 sulfonate ABC transporter compare
BPHYT_RS30795 +0.6 0.9 short-chain dehydrogenase compare
BPHYT_RS27690 +0.6 1.5 carbamate kinase compare
BPHYT_RS30420 +0.6 1.0 transcriptional regulator compare
BPHYT_RS12290 +0.6 0.8 universal stress protein UspA compare
BPHYT_RS27195 +0.6 1.8 LacI family transcriptional regulator compare
BPHYT_RS17440 +0.6 2.3 hypothetical protein compare
BPHYT_RS21720 +0.6 2.8 nitrate ABC transporter ATP-binding protein compare
BPHYT_RS30065 +0.6 2.0 shikimate dehydrogenase compare
BPHYT_RS01095 +0.6 0.9 hypothetical protein compare
BPHYT_RS05515 +0.6 1.7 hypothetical protein compare
BPHYT_RS04040 +0.6 2.4 hypothetical protein compare
BPHYT_RS10120 +0.6 0.8 membrane protein compare
BPHYT_RS03830 +0.6 1.0 hypothetical protein compare
BPHYT_RS31760 +0.6 1.4 aryldialkylphosphatase compare
BPHYT_RS36310 +0.6 2.2 hypothetical protein compare
BPHYT_RS19025 +0.6 2.5 transcriptional regulator compare
BPHYT_RS36130 +0.6 1.1 hypothetical protein compare
BPHYT_RS07085 +0.6 0.9 LysR family transcriptional regulator compare
BPHYT_RS31545 +0.6 2.8 membrane protein compare
BPHYT_RS28930 +0.6 0.6 chromosome partitioning protein ParA compare
BPHYT_RS30830 +0.6 1.5 MFS transporter compare
BPHYT_RS23940 +0.6 0.6 GntR family transcriptional regulator compare
BPHYT_RS35770 +0.6 0.9 glyoxalase compare
BPHYT_RS23210 +0.6 1.0 MFS transporter compare
BPHYT_RS00115 +0.6 1.1 acetaldehyde dehydrogenase compare
BPHYT_RS21220 +0.6 3.1 universal stress protein A compare
BPHYT_RS13915 +0.6 0.8 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase compare
BPHYT_RS21505 +0.6 1.0 amidohydrolase compare
BPHYT_RS08355 +0.6 1.1 hypothetical protein compare
BPHYT_RS11970 +0.6 0.8 cupin compare
BPHYT_RS23970 +0.6 2.0 iron ABC transporter substrate-binding protein compare
BPHYT_RS34240 +0.6 1.9 ABC transporter for L-rhamnose/L-fucose/xylitol, permease component (from data) compare
BPHYT_RS13895 +0.6 1.1 sugar ABC transporter substrate-binding protein compare
BPHYT_RS34640 +0.6 1.5 TetR family transcriptional regulator compare
BPHYT_RS22190 +0.6 1.1 nucleoid-structuring protein H-NS compare
BPHYT_RS24665 +0.5 0.9 ABC transporter permease compare
BPHYT_RS36320 +0.5 1.6 type IV secretion system family protein compare
BPHYT_RS18935 +0.5 2.6 flagellar biosynthesis regulator FlhF compare
BPHYT_RS26770 +0.5 1.2 histidine kinase compare
BPHYT_RS01625 +0.5 1.7 chemotaxis protein CheY compare
BPHYT_RS07235 +0.5 2.1 2-hydroxymuconic semialdehyde dehydrogenase compare
BPHYT_RS29920 +0.5 0.6 hypothetical protein compare
BPHYT_RS02130 +0.5 2.1 hydroxymethylglutaryl-CoA lyase compare
BPHYT_RS21585 +0.5 1.0 short-chain dehydrogenase compare
BPHYT_RS22330 +0.5 1.2 PhoB family transcriptional regulator compare
BPHYT_RS22600 +0.5 1.3 transport protein RbsD/FucU compare
BPHYT_RS16060 +0.5 2.0 ribonucleotide-diphosphate reductase subunit alpha compare
BPHYT_RS07930 +0.5 2.7 hypothetical protein compare
BPHYT_RS18855 +0.5 2.9 flagellar rod assembly protein FlgJ compare
BPHYT_RS27860 +0.5 1.3 membrane protein compare
BPHYT_RS32400 +0.5 2.4 TetR family transcriptional regulator compare
BPHYT_RS02300 +0.5 0.9 acid shock protein compare
BPHYT_RS36585 +0.5 2.0 hypothetical protein compare
BPHYT_RS00685 +0.5 1.4 transcriptional regulator compare
BPHYT_RS14790 +0.5 2.5 D-amino acid dehydrogenase compare
BPHYT_RS14015 +0.5 0.8 hypothetical protein compare
BPHYT_RS11680 +0.5 1.0 protein-L-isoaspartate O-methyltransferase compare
BPHYT_RS25335 +0.5 0.6 hypothetical protein compare
BPHYT_RS21160 +0.5 1.3 NAD(P) transhydrogenase subunit beta compare
BPHYT_RS10945 +0.5 0.8 2-deoxy-D-gluconate 3-dehydrogenase compare
BPHYT_RS15650 +0.5 3.3 quinolinate synthetase compare


Specific Phenotypes

For 16 genes in this experiment

For carbon source L-Glutamine in Burkholderia phytofirmans PsJN

For carbon source L-Glutamine across organisms