Experiment set1IT020 for Sinorhizobium meliloti 1021

Compare to:

Glycerol carbon source

200 most important genes:

  gene name fitness t score description  
SMc02767 -8.6 -8.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
SMc02245 -8.5 -5.8 dihydroorotate dehydrogenase 2 compare
SMc00235 -8.4 -5.8 anthranilate phosphoribosyltransferase compare
SMc00236 -8.3 -5.8 Indole-3-glycerol phosphate synthase compare
SMc03797 -8.1 -9.6 homoserine O-succinyltransferase compare
SMc02766 -8.1 -14.5 tryptophan synthase subunit beta compare
SMc01801 -8.0 -5.2 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMc01843 -7.7 -12.8 5,10-methylenetetrahydrofolate reductase compare
SMc01431 -7.6 -9.1 acetolactate synthase 3 catalytic subunit compare
SMc04405 -7.6 -9.0 3-isopropylmalate dehydrogenase compare
SMc01004 -7.5 -10.3 phosphoribosyl-AMP cyclohydrolase compare
SMc02717 -7.5 -11.5 2-isopropylmalate synthase compare
SMc03823 -7.5 -12.8 isopropylmalate isomerase large subunit compare
SMc02137 -7.5 -5.1 ornithine carbamoyltransferase compare
SMc02572 -7.4 -5.4 imidazole glycerol phosphate synthase subunit HisH compare
SMc00640 -7.2 -11.1 phosphoserine aminotransferase compare
SMc02725 -7.1 -14.4 anthranilate synthase compare
SMc00917 -7.0 -6.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
SMc02899 -7.0 -11.5 prephenate dehydratase compare
SMc01726 -7.0 -8.3 acetylglutamate kinase compare
SMc00494 -7.0 -2.6 phosphoribosylformylglycinamidine synthase subunit PurS compare
SMc04002 -6.9 -8.0 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
SMc02569 -6.7 -6.5 imidazole glycerol phosphate synthase subunit HisF compare
SMc02765 -6.7 -12.5 tryptophan synthase subunit alpha compare
SMa1635 -6.7 -2.5 hypothetical protein compare
SMc04045 -6.7 -10.2 dihydroxy-acid dehydratase compare
SMc04028 -6.6 -19.6 glutamate synthase compare
SMc00293 -6.6 -15.1 homoserine dehydrogenase compare
SMc00614 -6.5 -9.0 phosphoribosylglycinamide formyltransferase compare
SMc01494 -6.5 -8.1 phosphoserine phosphatase compare
SMc00554 -6.5 -7.8 amidophosphoribosyltransferase compare
SMc03112 -6.4 -19.2 B12-dependent methionine synthase compare
SMc00488 -6.4 -20.1 phosphoribosylformylglycinamidine synthase II compare
SMc02217 -6.4 -8.7 O-succinylhomoserine sulfhydrylase compare
SMc03826 -6.3 -4.4 argininosuccinate synthase compare
SMc00993 -6.3 -10.5 phosphoribosylamine--glycine ligase compare
SMc00334 -6.2 -3.7 cytidylate kinase compare
SMc00495 -6.1 -5.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
SMc02755 -6.1 -7.2 S-adenosyl-L-homocysteine hydrolase compare
SMc04088 -5.9 -9.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SMc00815 -5.8 -3.7 inosine 5'-monophosphate dehydrogenase compare
SMc03895 -5.8 -19.4 pyruvate carboxylase compare
SMc04026 -5.8 -6.7 glutamate synthase compare
SMc03777 -5.7 -10.3 gamma-glutamyl phosphate reductase compare
SMc00412 -5.7 -6.8 orotidine 5'-phosphate decarboxylase compare
SMc02165 -5.6 -10.8 orotate phosphoribosyltransferase compare
SMc02123 -5.6 -5.2 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
SMc03979 -5.6 -3.8 glyceraldehyde-3-phosphate dehydrogenase compare
SMc00493 -5.4 -6.7 phosphoribosylformylglycinamidine synthase I compare
SMc00131 -5.4 -16.3 transcriptional regulator compare
SMc01360 -5.4 -5.2 aspartate carbamoyltransferase catalytic subunit compare
SMc02574 -5.2 -7.3 imidazoleglycerol-phosphate dehydratase compare
SMc00918 -5.2 -13.6 ATP phosphoribosyltransferase regulatory subunit compare
SMc02307 -5.2 -10.5 histidinol dehydrogenase compare
SMc01215 -5.1 -3.5 carbamoyl phosphate synthase large subunit compare
SMc02166 -5.1 -11.3 dihydroorotase compare
SMc01361 -5.1 -4.9 dihydroorotase compare
SMc02520 -5.0 -14.6 glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) (from data) compare
SMc01569 -5.0 -2.6 carbamoyl phosphate synthase small subunit compare
SM_b21176 -4.9 -6.7 phosphate uptake ABC transporter substrate-binding protein precursor compare
SMc00615 -4.9 -6.8 phosphoribosylaminoimidazole synthetase compare
SMc02570 -4.9 -4.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
SMc02124 -4.9 -16.2 nitrite reductase compare
SMc03978 -4.8 -4.7 transketolase compare
SM_b21174 -4.8 -7.2 phosphate uptake ABC transporter permease compare
SMc00092 -4.7 -15.2 phosphoadenosine phosphosulfate reductase compare
SMc01881 -4.7 -4.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc01770 -4.6 -2.1 serine hydroxymethyltransferase compare
SMc00090 -4.6 -12.6 sulfate adenylyltransferase compare
SMc00711 -4.6 -4.2 cyclohexadienyl dehydrogenase compare
SMc03776 -4.6 -5.4 gamma-glutamyl kinase compare
SMc00017 -4.5 -2.4 homoserine kinase compare
SMc02246 -4.5 -1.7 hypothetical protein compare
SMc03763 -4.4 -4.3 cytosine-specific methyltransferase compare
SMc03795 -4.4 -2.3 isopropylmalate isomerase small subunit compare
SM_b21177 -4.3 -10.8 phosphate uptake ABC transporter ATP-binding protein compare
SMc00876 -4.3 -9.1 ATP-binding MRP protein compare
SMc00091 -4.2 -14.2 sulfate adenylyltransferase compare
SMc01054 -4.2 -5.9 required for sulfate utilization, putative electron source for sulfite reductase CysI (from data) compare
SMc01880 -4.2 -5.6 pantoate--beta-alanine ligase compare
SMc02707 -4.1 -7.9 hypothetical protein compare
SMc04005 -4.1 -10.9 pyruvate kinase compare
SMc03070 -3.9 -11.8 glucose-6-phosphate 1-dehydrogenase compare
SMc00641 -3.9 -4.8 D-3-phosphoglycerate dehydrogenase compare
SMc00294 -3.8 -12.4 aminotransferase compare
SMc02138 -3.8 -6.5 acetylornithine transaminase compare
SMc01852 -3.7 -12.7 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
SMc00963 -3.7 -7.7 hypothetical protein compare
SMc02229 -3.7 -17.7 acyl-CoA dehydrogenase compare
SMc03981 -3.6 -6.4 phosphoglycerate kinase compare
SMc00414 -3.5 -12.9 hypothetical protein compare
SM_b21175 -3.4 -4.6 phosphate uptake ABC transporter permease compare
SMc00053 -3.2 -1.7 monovalent cation/H+ antiporter subunit C compare
SMc01023 -3.2 -6.0 triosephosphate isomerase compare
SMc04001 -3.2 -1.7 phosphoribosylaminoimidazole carboxylase catalytic subunit protein compare
SMc04346 -3.1 -3.6 ketol-acid reductoisomerase compare
SMc01053 -3.1 -5.5 siroheme synthase compare
SMc01578 -2.7 -15.6 aspartate aminotransferase compare
SMc01430 -2.7 -5.2 acetolactate synthase 3 regulatory subunit compare
SMc01124 -2.7 -6.5 PII uridylyl-transferase compare
SMc01183 -2.7 -2.7 LexA repressor compare
SMc01850 -2.6 -4.4 hypothetical protein compare
SM_b21009 -2.5 -14.7 Glycerol kinase (EC 2.7.1.30) (from data) conserved
SMc02858 -2.4 -1.3 chaperone protein DnaJ compare
SM_b21192 -2.4 -12.2 fructose-1,6-bisphosphate aldolase compare
SMc02228 -2.4 -8.0 acetyl-CoA acetyltransferase compare
SMc01028 -2.4 -14.8 phosphopyruvate hydratase compare
SMc02640 -2.3 -6.6 UDP-glucuronic acid epimerase compare
SMc02983 -2.2 -7.6 ornithine, DAP, or arginine decarboxylase compare
SMc04296 -2.2 -2.1 cell division protein FtsZ compare
SMc02227 -2.1 -6.0 fatty oxidation complex enoyl-COA hydratase/3-hydroxyacyl-COA dehydrogenase/3-hydroxybutyryl-COA epimerase compare
SMc02833 -2.0 -2.8 penicillin-insensitive murein endopeptidase compare
SMc02058 -1.9 -5.1 YAJC protein compare
SMc02425 -1.9 -5.1 transcriptional regulator compare
SMc01206 -1.8 -3.1 queuine tRNA-ribosyltransferase compare
SMc02838 -1.8 -6.2 phosphoglyceromutase compare
SMc01368 -1.7 -5.9 transport transmembrane protein compare
SMc01613 -1.7 -5.6 ribose-5-phosphate isomerase B compare
SMc02147 -1.7 -6.8 phosphate regulon sensor histidine kinase transmembrane protein compare
SMc02141 -1.7 -5.3 phosphate transporter PhoU compare
SMc02140 -1.7 -1.5 phosphate regulon transcriptional regulatory protein compare
SMc04000 -1.6 -1.5 hypothetical protein compare
SMc03100 -1.6 -1.2 hypothetical protein compare
SMc01024 -1.5 -1.8 preprotein translocase subunit SecG compare
SMc02407 -1.5 -7.0 hypothetical protein compare
SMc01842 -1.4 -1.6 methyltransferase transcription regulator protein compare
SMc02850 -1.4 -3.8 DNA polymerase I compare
SMc03924 -1.4 -7.6 glycogen synthase compare
SMc01147 -1.3 -3.7 coproporphyrinogen III oxidase compare
SMc03069 -1.3 -3.8 6-phosphogluconolactonase compare
SMc03229 -1.3 -1.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc02172 -1.2 -7.3 transcriptional regulator compare
SMc00928 -1.2 -1.4 signal peptide protein compare
SMc01207 -1.2 -1.8 S-adenosylmethionine--tRNA ribosyltransferase-isomerase compare
SMc02115 -1.2 -1.0 hypothetical protein compare
SMc01187 -1.2 -1.6 rare lipoprotein A compare
SMc01595 -1.2 -2.9 sensor histidine kinase transmembrane protein compare
SMc01007 -1.2 -2.4 hypothetical protein compare
SMc04243 -1.1 -5.8 high-affinity zinc uptake system membrane ABC transporter protein compare
SMc02142 -1.1 -5.6 phosphate transporter ATP-binding protein compare
SMc02985 -1.1 -7.3 hypothetical protein compare
SMc00580 -1.1 -3.6 4-hydroxythreonine-4-phosphate dehydrogenase compare
SMc02145 -1.1 -1.1 signal peptide protein compare
SMc02232 -1.1 -3.5 hypothetical protein compare
SMc00569 -1.1 -2.5 hypothetical protein compare
SMc00821 -1.0 -2.0 hypothetical protein compare
SMc00838 -1.0 -5.7 hypothetical protein compare
SMc00450 -1.0 -2.6 protoheme IX farnesyltransferase compare
SM_b21173 -1.0 -1.9 hypothetical protein compare
SMc02434 -1.0 -2.2 hypothetical protein compare
SMc01280 -1.0 -2.1 protease compare
SMc01119 -1.0 -1.6 hypothetical protein compare
SMc02685 -1.0 -3.0 hypothetical protein compare
SMc01438 -0.9 -3.4 protease precursor signal peptide protein compare
SMc00492 -0.9 -1.0 hypothetical protein compare
SMc02724 -0.9 -2.8 hypothetical protein compare
SMc00513 -0.9 -5.4 amino acid-binding periplasmic protein compare
SMc00361 -0.9 -2.2 hypothetical protein compare
SMc02144 -0.9 -4.9 phosphate ABC transporter permease compare
SMc04245 -0.9 -6.0 high-affinity zinc uptake system ABC transporter protein compare
SM_b20055 -0.9 -1.6 transcriptional regulator compare
SMc00088 -0.9 -1.4 hypothetical protein compare
SM_b20948 -0.9 -1.2 glucosyltransferase compare
SMc03774 -0.9 -2.9 hypothetical protein compare
SMc02683 -0.8 -1.6 hypothetical protein compare
SMc02812 -0.8 -2.2 hypothetical protein compare
SMc00455 -0.8 -3.1 hypothetical protein compare
SMc00619 -0.8 -1.6 hypothetical protein compare
SMc04244 -0.8 -2.6 high-affinity zinc uptake system ATP-binding ABC transporter protein compare
SMc02677 -0.8 -3.6 pyrroline-5-carboxylate reductase compare
SM_b21480 -0.8 -1.2 hypothetical protein compare
SMc00650 -0.8 -1.8 hypothetical protein compare
SMc02102 -0.8 -3.1 hypothetical protein compare
SMc03967 -0.8 -0.9 Holliday junction resolvase compare
SMc00856 -0.8 -1.1 hypothetical protein compare
SMa0734 -0.8 -1.7 hypothetical protein compare
SMc00060 -0.8 -4.0 hypothetical protein compare
SMc03980 -0.8 -3.2 hypothetical protein compare
SM_b21040 -0.7 -2.6 oligopeptidemurein peptide ABC transporter ATP-binding protein compare
SMc01440 -0.7 -3.0 hydrolase serine protease transmembrane protein compare
SMc02225 -0.7 -2.8 hypothetical protein compare
SMc02866 -0.7 -1.8 transcriptional regulator compare
SMa2020 -0.7 -3.7 Transcriptional regulator compare
SMc01540 -0.7 -1.4 hypothetical protein compare
SMc02121 -0.7 -1.4 ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, ATPase component (from data) compare
SMa0789 -0.7 -2.4 GntR family transcriptional regulator compare
SMc04327 -0.7 -1.0 hypothetical protein compare
SMc02641 -0.7 -3.3 UDP-glucose 6-dehydrogenase compare
SMa1770 -0.7 -1.1 hypothetical protein compare
SMc02543 -0.7 -3.8 hypothetical protein compare
SMc02450 -0.7 -2.0 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
SMc01441 -0.7 -2.7 membrane bound protease compare
SMc01364 -0.7 -0.8 DNA topoisomerase I compare
SMc03028 -0.7 -1.9 flagellar basal body rod protein FlgC compare
SMa1779 -0.7 -1.2 hypothetical protein compare
SMc02308 -0.7 -2.4 hypothetical protein compare
SMc04881 -0.7 -1.7 virulence associated protein compare
SMc00302 -0.7 -2.1 hypothetical protein compare
SMc02615 -0.7 -1.4 signal peptide protein compare
SMc04121 -0.7 -1.6 uracil phosphoribosyltransferase compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Glycerol in Sinorhizobium meliloti 1021

For carbon source Glycerol across organisms