Experiment set1IT020 for Burkholderia phytofirmans PsJN

Compare to:

L-Asparagine carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS02610 -8.2 -5.7 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS17680 -8.0 -5.6 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS09500 -7.6 -5.3 glucose-6-phosphate isomerase compare
BPHYT_RS17675 -7.3 -2.9 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS16835 -7.2 -7.0 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS33915 -6.9 -9.5 isopropylmalate isomerase compare
BPHYT_RS03150 -6.6 -14.1 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS17685 -6.5 -11.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS14895 -6.4 -4.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS18320 -6.4 -12.3 orotate phosphoribosyltransferase compare
BPHYT_RS14915 -6.3 -8.4 phosphoserine aminotransferase compare
BPHYT_RS33880 -6.2 -8.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS17890 -6.2 -4.1 shikimate kinase compare
BPHYT_RS13705 -6.1 -4.2 chorismate synthase compare
BPHYT_RS17690 -6.1 -14.2 imidazole glycerol phosphate synthase compare
BPHYT_RS12985 -6.1 -4.2 amino acid acetyltransferase compare
BPHYT_RS14845 -6.0 -4.1 cysteine synthase compare
BPHYT_RS33900 -5.9 -14.5 3-isopropylmalate dehydrogenase compare
BPHYT_RS33875 -5.9 -11.5 tryptophan synthase subunit alpha compare
BPHYT_RS06555 -5.8 -10.3 ketol-acid reductoisomerase compare
BPHYT_RS09515 -5.7 -5.5 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS06900 -5.5 -9.2 aspartate aminotransferase compare
BPHYT_RS02590 -5.5 -11.9 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS33835 -5.5 -11.4 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS16905 -5.4 -7.4 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS17670 -5.4 -7.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS08850 -5.4 -3.7 transcriptional regulator compare
BPHYT_RS15920 -5.3 -12.3 argininosuccinate synthase compare
BPHYT_RS17400 -5.2 -6.9 anthranilate phosphoribosyltransferase compare
BPHYT_RS06545 -5.2 -13.3 acetolactate synthase compare
BPHYT_RS17405 -5.2 -2.0 indole-3-glycerol phosphate synthase compare
BPHYT_RS17395 -5.1 -3.4 anthranilate synthase subunit II compare
BPHYT_RS04955 -5.1 -3.4 methionyl-tRNA synthetase compare
BPHYT_RS08960 -5.0 -3.3 threonine synthase compare
BPHYT_RS33645 -5.0 -8.9 homoserine kinase compare
BPHYT_RS15915 -5.0 -12.6 ornithine carbamoyltransferase compare
BPHYT_RS33865 -4.9 -12.0 tryptophan synthase alpha chain compare
BPHYT_RS17390 -4.8 -17.4 anthranilate synthase subunit I compare
BPHYT_RS12530 -4.8 -6.0 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS16255 -4.8 -4.6 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS17380 -4.8 -11.5 ribulose-phosphate 3-epimerase compare
BPHYT_RS12845 -4.7 -19.7 ATPase compare
BPHYT_RS14190 -4.7 -9.4 carbamoyl phosphate synthase large subunit compare
BPHYT_RS06175 -4.6 -6.9 LPS biosynthesis compare
BPHYT_RS14855 -4.6 -4.1 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS17715 -4.6 -6.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS16245 -4.6 -7.9 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS03640 -4.5 -5.3 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS06190 -4.5 -6.6 heptosyltransferase compare
BPHYT_RS33920 -4.5 -11.5 type II citrate synthase compare
BPHYT_RS16675 -4.5 -3.1 dihydroorotase compare
BPHYT_RS16840 -4.4 -3.1 transketolase compare
BPHYT_RS16270 -4.4 -4.4 phosphoglycerate kinase compare
BPHYT_RS33840 -4.4 -9.1 amidophosphoribosyltransferase compare
BPHYT_RS06610 -4.4 -3.3 triosephosphate isomerase compare
BPHYT_RS16710 -4.3 -2.3 LysR family transcriptional regulator compare
BPHYT_RS04725 -4.3 -7.4 sulfite reductase compare
BPHYT_RS02865 -4.3 -4.1 hypothetical protein compare
BPHYT_RS08955 -4.2 -6.6 homoserine dehydrogenase compare
BPHYT_RS17885 -4.1 -8.7 3-dehydroquinate synthase compare
BPHYT_RS01595 -4.1 -10.0 homoserine O-acetyltransferase compare
BPHYT_RS04740 -4.1 -9.8 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS14910 -4.0 -14.4 chorismate mutase compare
BPHYT_RS08815 -4.0 -6.1 L-asparaginase (EC 3.5.1.1) (from data) conserved
BPHYT_RS12055 -4.0 -22.8 phosphoenolpyruvate synthase compare
BPHYT_RS08565 -3.7 -1.9 dihydroorotate dehydrogenase compare
BPHYT_RS16880 -3.7 -2.7 malic enzyme compare
BPHYT_RS17700 -3.7 -6.2 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS06405 -3.6 -6.4 phosphoribosylamine--glycine ligase compare
BPHYT_RS04720 -3.6 -5.8 transcriptional regulator compare
BPHYT_RS04730 -3.5 -6.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS03535 -3.5 -9.1 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS10100 -3.2 -4.6 dihydroxy-acid dehydratase compare
BPHYT_RS35885 -3.1 -3.3 hypothetical protein compare
BPHYT_RS08245 -3.1 -9.9 anti-sigma factor compare
BPHYT_RS15590 -3.1 -9.8 amino acid ABC transporter ATPase compare
BPHYT_RS12840 -3.1 -4.9 pyruvate dehydrogenase compare
BPHYT_RS04385 -3.1 -6.3 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS14865 -3.1 -3.6 UDP-glucose 6-dehydrogenase compare
BPHYT_RS15600 -3.0 -11.9 ABC transporter ATP-binding protein compare
BPHYT_RS01885 -3.0 -12.3 branched-chain amino acid ABC transporter substrate-binding protein compare
BPHYT_RS33905 -3.0 -1.6 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS06685 -3.0 -3.8 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS15595 -2.8 -14.8 ABC transporter compare
BPHYT_RS15605 -2.7 -14.1 ABC transporter permease compare
BPHYT_RS01485 -2.6 -1.9 histidine kinase compare
BPHYT_RS04965 -2.5 -10.5 ATP-binding protein compare
BPHYT_RS04745 -2.5 -5.5 sulfate adenylyltransferase compare
BPHYT_RS14195 -2.4 -3.2 carbamoyl phosphate synthase small subunit compare
BPHYT_RS23840 -2.4 -3.5 methyltransferase compare
BPHYT_RS13220 -2.3 -10.6 phosphomethylpyrimidine synthase compare
BPHYT_RS03570 -2.2 -9.9 heat-inducible transcription repressor HrcA compare
BPHYT_RS31910 -2.2 -3.2 hypothetical protein compare
BPHYT_RS15610 -2.2 -10.4 branched-chain amino acid ABC transporter substrate-binding protein conserved
BPHYT_RS08030 -2.1 -4.5 transposase compare
BPHYT_RS03625 -2.1 -9.1 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS03400 -2.0 -1.7 ATP-dependent DNA helicase RecG compare
BPHYT_RS18340 -1.9 -2.3 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS03725 -1.9 -2.4 serine hydroxymethyltransferase compare
BPHYT_RS02650 -1.9 -2.1 membrane protein compare
BPHYT_RS04370 -1.9 -3.0 glycosyl transferase compare
BPHYT_RS04290 -1.8 -1.8 glycosyl transferase family 2 compare
BPHYT_RS16065 -1.8 -1.6 LacI family transcriptional regulator compare
BPHYT_RS02690 -1.8 -9.5 protoheme IX farnesyltransferase compare
BPHYT_RS01590 -1.7 -5.0 methionine biosynthesis protein MetW compare
BPHYT_RS03645 -1.7 -3.8 tRNA dimethylallyltransferase compare
BPHYT_RS06350 -1.7 -3.4 chemotaxis protein CheY compare
BPHYT_RS23570 -1.7 -6.3 chemotaxis protein CheY compare
BPHYT_RS15620 -1.7 -4.5 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS15075 -1.7 -2.3 dihydrokaempferol 4-reductase compare
BPHYT_RS15670 -1.6 -4.8 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS05960 -1.6 -7.2 endoribonuclease L-PSP compare
BPHYT_RS08950 -1.6 -5.1 aminotransferase compare
BPHYT_RS02685 -1.6 -9.8 cytochrome C oxidase subunit I compare
BPHYT_RS20790 -1.6 -2.6 TetR family transcriptional regulator compare
BPHYT_RS19570 -1.6 -13.0 sodium/hydrogen exchanger compare
BPHYT_RS17540 -1.6 -12.2 L-aspartate/L-glutamate/L-glutamine:H+ symporter (from data) conserved
BPHYT_RS13645 -1.6 -11.9 threonine--tRNA ligase compare
BPHYT_RS04285 -1.5 -2.0 rhamnosyltransferase compare
BPHYT_RS16085 -1.5 -4.6 DeoR faimly transcriptional regulator compare
BPHYT_RS22910 -1.4 -1.7 hypothetical protein compare
BPHYT_RS19565 -1.4 -7.7 gamma-glutamyl:cysteine ligase compare
BPHYT_RS22455 -1.4 -1.6 phosphonate ABC transporter substrate-binding protein compare
BPHYT_RS12615 -1.4 -1.9 dihydrodipicolinate synthase compare
BPHYT_RS15615 -1.4 -2.8 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS02525 -1.4 -8.1 membrane protein compare
BPHYT_RS03495 -1.3 -5.6 hypothetical protein compare
BPHYT_RS24315 -1.3 -2.8 phosphoribosyltransferase compare
BPHYT_RS06070 -1.3 -5.9 cytochrome C compare
BPHYT_RS12990 -1.3 -3.2 iron transporter compare
BPHYT_RS06345 -1.3 -6.1 sensor histidine kinase compare
BPHYT_RS35385 -1.3 -4.0 GntR family transcriptional regulator compare
BPHYT_RS02665 -1.3 -9.8 MFS transporter compare
BPHYT_RS11285 -1.3 -1.9 LacI family transcription regulator compare
BPHYT_RS36275 -1.3 -2.5 hypothetical protein compare
BPHYT_RS11960 -1.2 -1.6 MarR family transcriptional regulator compare
BPHYT_RS27175 -1.2 -1.2 DNA-binding protein compare
BPHYT_RS18705 -1.2 -1.2 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS06325 -1.2 -5.4 ATPase compare
BPHYT_RS02640 -1.2 -8.8 cytochrome C oxidase compare
BPHYT_RS14660 -1.2 -1.7 hypothetical protein compare
BPHYT_RS17920 -1.2 -1.7 protein CyaY compare
BPHYT_RS08125 -1.2 -7.4 ATPase compare
BPHYT_RS29920 -1.2 -1.0 hypothetical protein compare
BPHYT_RS06550 -1.2 -2.7 acetolactate synthase compare
BPHYT_RS33580 -1.2 -4.7 geranyltranstransferase compare
BPHYT_RS06065 -1.2 -6.8 cytochrome C compare
BPHYT_RS32145 -1.1 -4.5 type IV secretory pathway protein VirD4 compare
BPHYT_RS20665 -1.1 -1.1 LysR family transcriptional regulator compare
BPHYT_RS16975 -1.1 -4.1 shikimate 5-dehydrogenase compare
BPHYT_RS15890 -1.1 -1.5 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
BPHYT_RS14900 -1.1 -2.5 prephenate dehydrogenase compare
BPHYT_RS06410 -1.1 -1.5 transcriptional regulator compare
BPHYT_RS06375 -1.1 -5.3 ribonuclease compare
BPHYT_RS10095 -1.1 -3.0 integrase compare
BPHYT_RS17530 -1.1 -5.5 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS17945 -1.1 -2.0 cytochrome C biogenesis protein compare
BPHYT_RS06195 -1.1 -2.1 membrane protein compare
BPHYT_RS16340 -1.1 -6.1 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS21675 -1.1 -2.4 FAD-dependent oxidoreductase compare
BPHYT_RS30995 -1.1 -1.1 glucose-1-phosphate thymidylyltransferase compare
BPHYT_RS17100 -1.1 -4.4 RNA pyrophosphohydrolase compare
BPHYT_RS09160 -1.1 -3.9 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS18760 -1.0 -3.6 flagellar biosynthesis protein FliT compare
BPHYT_RS19680 -1.0 -8.4 glutamate--cysteine ligase compare
BPHYT_RS15710 -1.0 -1.5 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS03215 -1.0 -1.5 TetR family transcriptional regulator compare
BPHYT_RS31815 -1.0 -3.0 hypothetical protein compare
BPHYT_RS18620 -1.0 -4.0 transcriptional regulator compare
BPHYT_RS06075 -1.0 -4.4 hypothetical protein compare
BPHYT_RS33535 -1.0 -8.2 RNA polymerase sigma factor RpoD compare
BPHYT_RS02310 -1.0 -6.7 5-methyltetrahydrofolate--homocysteine methyltransferase compare
BPHYT_RS23230 -1.0 -0.8 histidine kinase compare
BPHYT_RS22730 -1.0 -3.6 serine/threonine kinase compare
BPHYT_RS08525 -1.0 -1.3 SAM-dependent methyltransferase compare
BPHYT_RS28705 -1.0 -1.5 IclR family transcriptional regulator compare
BPHYT_RS16090 -1.0 -1.9 hypothetical protein compare
BPHYT_RS09330 -1.0 -6.5 phytoene synthase compare
BPHYT_RS23650 -1.0 -0.8 hypothetical protein compare
BPHYT_RS04890 -1.0 -1.4 cobalamin biosynthesis protein CobD compare
BPHYT_RS02600 -1.0 -2.2 glutaredoxin compare
BPHYT_RS03875 -0.9 -2.2 dehydrogenase compare
BPHYT_RS26080 -0.9 -1.4 ABC transporter ATPase compare
BPHYT_RS05290 -0.9 -1.3 hypothetical protein compare
BPHYT_RS29245 -0.9 -2.5 peptidase M23 compare
BPHYT_RS22695 -0.9 -4.8 TetR family transcriptional regulator compare
BPHYT_RS21860 -0.9 -1.3 hypothetical protein compare
BPHYT_RS34745 -0.9 -1.0 hypothetical protein compare
BPHYT_RS06600 -0.9 -1.6 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS30745 -0.9 -1.9 hypothetical protein compare
BPHYT_RS04830 -0.9 -3.4 hypothetical protein compare
BPHYT_RS07760 -0.9 -2.0 diguanylate phosphodiesterase compare
BPHYT_RS07325 -0.9 -1.0 GntR family transcriptional regulator compare
BPHYT_RS22360 -0.9 -2.3 response regulator receiver compare
BPHYT_RS13390 -0.9 -1.0 IclR family transcriptional regulator compare
BPHYT_RS15305 -0.8 -3.4 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
BPHYT_RS04820 -0.8 -2.7 LysR family transcriptional regulator compare
BPHYT_RS12815 -0.8 -5.5 IclR family transcriptional regulator compare
BPHYT_RS12150 -0.8 -5.6 PII uridylyl-transferase compare
BPHYT_RS14400 -0.8 -2.8 anti-sigma factor compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source L-Asparagine in Burkholderia phytofirmans PsJN

For carbon source L-Asparagine across organisms