Experiment set1IT019 for Pseudomonas fluorescens FW300-N2C3

Compare to:

Sodium pyruvate carbon source

200 most important genes:

  gene name fitness t score description  
AO356_08635 -4.7 -8.5 ATP phosphoribosyltransferase regulatory subunit compare
AO356_12020 -4.7 -10.0 pyruvate carboxylase subunit A compare
AO356_21440 -4.4 -9.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_13405 -4.1 -9.8 methionine biosynthesis protein MetW compare
AO356_12025 -4.0 -15.1 pyruvate carboxylase subunit B compare
AO356_16075 -3.9 -4.6 Fis family transcriptional regulator compare
AO356_21400 -3.7 -7.8 isopropylmalate isomerase compare
AO356_18325 -3.7 -12.0 argininosuccinate synthase compare
AO356_09800 -3.6 -3.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_10915 -3.6 -10.1 tryptophan synthase subunit beta compare
AO356_21415 -3.6 -11.4 3-isopropylmalate dehydrogenase compare
AO356_13085 -3.5 -9.8 N-acetylglutamate synthase compare
AO356_16175 -3.5 -8.7 acetolactate synthase 3 regulatory subunit compare
AO356_14435 -3.5 -7.4 anthranilate phosphoribosyltransferase compare
AO356_18275 -3.5 -13.4 ornithine carbamoyltransferase compare
AO356_09815 -3.5 -6.6 imidazoleglycerol-phosphate dehydratase compare
AO356_13410 -3.5 -11.8 homoserine O-acetyltransferase compare
AO356_09810 -3.5 -4.7 imidazole glycerol phosphate synthase subunit HisH compare
AO356_12520 -3.5 -2.4 orotate phosphoribosyltransferase compare
AO356_14440 -3.4 -4.9 indole-3-glycerol-phosphate synthase compare
AO356_19795 -3.4 -3.3 glycerol-3-phosphate dehydrogenase compare
AO356_19045 -3.3 -12.7 chemotaxis protein CheY compare
AO356_09375 -3.3 -20.4 glutamate synthase compare
AO356_09370 -3.3 -12.3 glutamate synthase compare
AO356_06965 -3.2 -9.7 histidinol dehydrogenase compare
AO356_14420 -3.2 -14.4 anthranilate synthase compare
AO356_08905 -3.2 -2.2 glycosyl transferase compare
AO356_13605 -3.2 -9.8 5,10-methylenetetrahydrofolate reductase compare
AO356_10910 -3.2 -8.7 tryptophan synthase subunit alpha compare
AO356_21405 -3.1 -4.5 3-isopropylmalate dehydratase compare
AO356_21465 -3.1 -5.1 amidophosphoribosyltransferase compare
AO356_17520 -3.1 -2.1 phosphoribosylformylglycinamidine synthase compare
AO356_15165 -3.1 -2.9 protein cII compare
AO356_16170 -3.1 -11.2 acetolactate synthase 3 catalytic subunit compare
AO356_12525 -3.0 -10.0 acetylglutamate kinase compare
AO356_13250 -3.0 -9.9 dihydroxy-acid dehydratase compare
AO356_09520 -3.0 -5.7 phosphoribosyl-AMP cyclohydrolase compare
AO356_06970 -2.9 -6.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_09525 -2.9 -6.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_10300 -2.9 -5.5 3-phosphoglycerate dehydrogenase compare
AO356_06550 -2.9 -8.9 2-isopropylmalate synthase compare
AO356_15815 -2.9 -2.7 gamma-glutamyl kinase compare
AO356_08735 -2.8 -12.6 phosphoserine phosphatase compare
AO356_22795 -2.8 -1.9 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_02265 -2.8 -4.9 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_21470 -2.8 -7.1 O-succinylhomoserine sulfhydrylase compare
AO356_00555 -2.8 -10.7 sulfite reductase compare
AO356_14430 -2.7 -8.6 anthranilate synthase compare
AO356_16180 -2.7 -13.4 ketol-acid reductoisomerase compare
AO356_01750 -2.7 -3.2 ATP-dependent Clp protease proteolytic subunit compare
AO356_12780 -2.7 -6.6 argininosuccinate lyase compare
AO356_19090 -2.6 -2.4 phosphoribosylaminoimidazole synthetase compare
AO356_00560 -2.5 -2.9 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_16095 -2.5 -9.0 molecular chaperone DnaK compare
AO356_12015 -2.4 -9.1 LysR family transcriptional regulator compare
AO356_22200 -2.4 -7.5 sirohydrochlorin ferrochelatase compare
AO356_10340 -2.4 -12.1 phosphoserine phosphatase compare
AO356_19425 -2.3 -2.7 lipid A biosynthesis lauroyl acyltransferase compare
AO356_07480 -2.3 -3.1 carbamoyl phosphate synthase large subunit compare
AO356_00355 -2.2 -9.1 chemotaxis protein CheY compare
AO356_09795 -2.2 -1.5 imidazole glycerol phosphate synthase subunit HisF compare
AO356_07915 -2.2 -2.5 exodeoxyribonuclease V subunit beta compare
AO356_10585 -2.2 -11.3 hypothetical protein compare
AO356_08895 -2.2 -1.5 GlcNAc-PI de-N-acetylase compare
AO356_14295 -2.1 -2.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_07055 -2.1 -2.8 phosphocarrier protein HPr compare
AO356_11315 -2.0 -1.4 shikimate dehydrogenase compare
AO356_18020 -1.9 -3.8 ATP-dependent DNA helicase RuvA compare
AO356_01745 -1.9 -4.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_13685 -1.9 -3.7 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_06690 -1.9 -3.2 queuine tRNA-ribosyltransferase compare
AO356_10350 -1.9 -10.8 phosphoenolpyruvate-protein phosphotransferase compare
AO356_11025 -1.8 -5.0 transcriptional regulator PhoU compare
AO356_20175 -1.7 -1.1 3-oxoacyl-ACP synthase compare
AO356_07910 -1.7 -1.5 exodeoxyribonuclease V subunit alpha compare
AO356_01840 -1.6 -2.6 uracil permease compare
AO356_18805 -1.6 -1.3 magnesium transporter compare
AO356_03405 -1.6 -3.6 serine acetyltransferase compare
AO356_02315 -1.6 -3.4 DNA topoisomerase I compare
AO356_02175 -1.5 -7.0 transaldolase compare
AO356_26360 -1.5 -2.5 enoyl-CoA hydratase compare
AO356_19085 -1.4 -6.4 phosphoribosylglycinamide formyltransferase compare
AO356_25670 -1.4 -7.5 regulator conserved
AO356_18730 -1.4 -6.7 arginine N-succinyltransferase compare
AO356_06005 -1.4 -3.5 zinc metallopeptidase RseP compare
AO356_03415 -1.4 -6.6 oxidoreductase compare
AO356_11465 -1.3 -6.6 DNA polymerase I compare
AO356_22950 -1.3 -2.0 peptidylprolyl isomerase compare
AO356_19050 -1.3 -1.9 cysteine synthase compare
AO356_27180 -1.3 -2.8 hypothetical protein compare
AO356_12735 -1.3 -1.9 diaminopimelate epimerase compare
AO356_11610 -1.3 -1.6 glycerol acyltransferase compare
AO356_12375 -1.3 -6.8 histidine kinase compare
AO356_04970 -1.3 -5.6 aspartate-semialdehyde dehydrogenase compare
AO356_04575 -1.3 -7.0 RNA polymerase subunit sigma compare
AO356_10140 -1.2 -6.4 phosphoenolpyruvate carboxykinase [ATP] compare
AO356_09540 -1.2 -1.0 twin-arginine protein translocation system subunit TatC compare
AO356_27205 -1.2 -5.3 hypothetical protein compare
AO356_28520 -1.2 -2.4 multidrug MFS transporter compare
AO356_24845 -1.1 -2.1 ATPase compare
AO356_06960 -1.1 -4.4 histidinol-phosphate aminotransferase compare
AO356_03345 -1.1 -5.7 hypothetical protein compare
AO356_04560 -1.1 -2.0 serine peptidase compare
AO356_03400 -1.1 -4.0 aminotransferase DegT compare
AO356_07020 -1.1 -1.5 LPS export ABC transporter periplasmic protein LptC compare
AO356_12715 -1.1 -3.1 hypothetical protein compare
AO356_05735 -1.1 -1.4 hypothetical protein compare
AO356_27210 -1.1 -5.4 hypothetical protein compare
AO356_27215 -1.1 -1.8 hypothetical protein compare
AO356_03355 -1.1 -2.9 hypothetical protein compare
AO356_02310 -1.0 -2.4 PasA protein compare
AO356_10330 -1.0 -7.7 threonine dehydratase compare
AO356_21410 -1.0 -2.4 SAM-dependent methyltransferase compare
AO356_11585 -1.0 -3.0 lipid A biosynthesis lauroyl acyltransferase compare
AO356_24550 -1.0 -1.8 hypothetical protein compare
AO356_22825 -1.0 -2.0 transcriptional regulator compare
AO356_07390 -1.0 -1.4 polyribonucleotide nucleotidyltransferase compare
AO356_25675 -1.0 -4.9 histidine kinase compare
AO356_03435 -1.0 -2.3 integration host factor subunit beta compare
AO356_07000 -1.0 -2.3 ABC transporter permease compare
AO356_14105 -1.0 -1.7 glycine cleavage system protein R compare
AO356_07005 -1.0 -1.6 ABC transporter ATP-binding protein compare
AO356_04055 -0.9 -1.9 hypothetical protein compare
AO356_16870 -0.9 -6.1 benzoate transporter compare
AO356_10890 -0.9 -2.4 holliday junction resolvasome, helicase subunit compare
AO356_21330 -0.9 -5.4 aromatic amino acid aminotransferase compare
AO356_25120 -0.9 -1.9 hypothetical protein compare
AO356_17075 -0.9 -1.2 cytochrome C compare
AO356_27840 -0.9 -5.2 sodium:proton antiporter compare
AO356_17485 -0.9 -2.9 elongation factor 4 compare
AO356_10000 -0.9 -3.0 hypothetical protein compare
AO356_27360 -0.9 -2.6 nitrile hydratase subunit alpha compare
AO356_01915 -0.9 -1.9 hypothetical protein compare
AO356_02190 -0.9 -4.0 hypothetical protein compare
AO356_16665 -0.9 -6.2 sulfate adenylyltransferase compare
AO356_03420 -0.9 -4.2 UDP-N-acetyl-D-glucosamine dehydrogenase compare
AO356_17950 -0.9 -4.5 histidine kinase compare
AO356_16080 -0.9 -5.6 ATPase compare
AO356_08875 -0.9 -1.9 toluene tolerance protein compare
AO356_23325 -0.9 -2.8 short-chain dehydrogenase compare
AO356_18735 -0.9 -2.9 arginine N-succinyltransferase compare
AO356_03620 -0.9 -2.1 cytochrome C compare
AO356_03180 -0.8 -2.2 CysB family transcriptional regulator compare
AO356_20830 -0.8 -2.0 phosphoadenosine phosphosulfate reductase compare
AO356_12485 -0.8 -2.6 DNA-directed RNA polymerase subunit omega compare
AO356_14135 -0.8 -6.2 biotin synthase compare
AO356_08930 -0.8 -1.6 heptose kinase compare
AO356_14820 -0.8 -1.7 Isochorismatase compare
AO356_06615 -0.8 -1.1 FeS assembly protein IscX compare
AO356_22680 -0.8 -1.8 chemotaxis protein CheY compare
AO356_16450 -0.8 -1.9 GTP-binding protein compare
AO356_29255 -0.8 -2.3 hypothetical protein compare
AO356_00880 -0.8 -1.0 integration host factor subunit alpha compare
AO356_08880 -0.8 -3.3 glycosyl transferase compare
AO356_26455 -0.8 -0.9 hypothetical protein compare
AO356_27250 -0.8 -3.4 hypothetical protein compare
AO356_26395 -0.8 -1.2 hypothetical protein compare
AO356_27230 -0.8 -3.5 hypothetical protein compare
AO356_03095 -0.8 -4.0 protease HtpX compare
AO356_05900 -0.8 -3.4 stationary phase survival protein SurE compare
AO356_27245 -0.8 -1.4 hypothetical protein compare
AO356_03210 -0.8 -1.5 hypothetical protein compare
AO356_10185 -0.8 -3.9 glutamate--cysteine ligase compare
AO356_02440 -0.8 -4.0 cytochrome C oxidase Cbb3 compare
AO356_19420 -0.8 -1.2 septum formation inhibitor compare
AO356_27240 -0.8 -2.4 hypothetical protein compare
AO356_29120 -0.8 -2.3 vanillate monooxygenase compare
AO356_05630 -0.8 -2.5 LysR family transcriptional regulator compare
AO356_23945 -0.8 -1.3 hypothetical protein compare
AO356_18810 -0.8 -2.6 DNA-binding protein compare
AO356_20090 -0.8 -1.7 protein tyrosine phosphatase compare
AO356_21460 -0.8 -1.4 colicin V production CvpA compare
AO356_06170 -0.8 -2.9 hypothetical protein compare
AO356_03350 -0.8 -3.4 glycosyl transferase compare
AO356_18025 -0.7 -1.5 ATP-dependent DNA helicase RuvB compare
AO356_22675 -0.7 -1.1 sulfate transporter compare
AO356_09730 -0.7 -3.1 nitrogen regulation protein NR(I) compare
AO356_12380 -0.7 -3.5 ATP-dependent DNA helicase RecG compare
AO356_05895 -0.7 -3.3 protein-L-isoaspartate O-methyltransferase compare
AO356_20520 -0.7 -1.0 oxidoreductase compare
AO356_16670 -0.7 -5.1 adenylylsulfate kinase compare
AO356_14140 -0.7 -5.1 8-amino-7-oxononanoate synthase compare
AO356_27635 -0.7 -3.2 histidine kinase compare
AO356_06980 -0.7 -2.3 BolA family transcriptional regulator compare
AO356_07920 -0.7 -2.3 exodeoxyribonuclease V subunit gamma compare
AO356_06580 -0.7 -1.4 GTP-binding protein compare
AO356_28170 -0.7 -1.9 hypothetical protein compare
AO356_25380 -0.7 -2.5 alpha/beta hydrolase compare
AO356_05250 -0.7 -0.7 hypothetical protein compare
AO356_00525 -0.7 -1.8 cobalamin biosynthesis protein CobE compare
AO356_25555 -0.7 -2.3 transcriptional regulator compare
AO356_00975 -0.7 -0.6 hypothetical protein compare
AO356_00270 -0.7 -1.9 hypothetical protein compare
AO356_13570 -0.7 -4.3 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO356_03200 -0.7 -3.5 phospho-2-dehydro-3-deoxyheptonate aldolase compare
AO356_25870 -0.7 -2.9 secretion protein HlyD compare
AO356_02825 -0.7 -5.0 phosphoenolpyruvate synthase compare
AO356_18155 -0.7 -1.0 cold-shock protein compare
AO356_30040 -0.7 -2.0 formyltetrahydrofolate deformylase compare
AO356_09640 -0.7 -2.5 histidine utilization repressor compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Sodium pyruvate in Pseudomonas fluorescens FW300-N2C3

For carbon source Sodium pyruvate across organisms