Experiment set1IT019 for Phocaeicola vulgatus CL09T03C04

Compare to:

D-Fructose 20 mM carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1058_RS12490 -8.7 -6.0 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1058_RS09675 -7.6 -5.2 type II 3-dehydroquinate dehydratase compare
HMPREF1058_RS12780 -7.3 -8.7 M20 family metallo-hydrolase compare
HMPREF1058_RS07195 -7.1 -4.9 phosphoribosylanthranilate isomerase compare
HMPREF1058_RS08840 -7.0 -11.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1058_RS15870 -6.9 -6.7 ATP phosphoribosyltransferase compare
HMPREF1058_RS08640 -6.8 -4.0 acetylornithine carbamoyltransferase compare
HMPREF1058_RS07200 -6.8 -9.3 tryptophan synthase subunit alpha compare
HMPREF1058_RS07190 -6.5 -6.4 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1058_RS08645 -6.5 -13.2 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1058_RS08830 -6.4 -11.5 pyrroline-5-carboxylate reductase compare
HMPREF1058_RS08650 -6.3 -12.1 glutamate 5-kinase compare
HMPREF1058_RS06170 -6.3 -6.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1058_RS11730 -6.3 -4.3 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1058_RS15875 -6.3 -6.1 histidinol dehydrogenase compare
HMPREF1058_RS02220 -6.3 -4.3 branched-chain amino acid aminotransferase compare
HMPREF1058_RS07170 -6.3 -11.3 tryptophan synthase subunit beta compare
HMPREF1058_RS14730 -6.3 -9.2 threonine synthase compare
HMPREF1058_RS03800 -6.3 -4.3 serine hydroxymethyltransferase compare
HMPREF1058_RS00630 -6.2 -11.2 carbohydrate kinase compare
HMPREF1058_RS12115 -6.2 -12.3 acetylglutamate kinase compare
HMPREF1058_RS15885 -6.2 -9.5 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1058_RS14920 -6.1 -13.1 serine dehydratase subunit alpha family protein compare
HMPREF1058_RS09585 -6.1 -20.3 argininosuccinate lyase compare
HMPREF1058_RS14770 -6.1 -9.3 prephenate dehydrogenase compare
HMPREF1058_RS14565 -6.1 -15.7 3-isopropylmalate dehydrogenase compare
HMPREF1058_RS06180 -6.1 -5.9 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1058_RS17935 -6.1 -10.1 glycosyltransferase compare
HMPREF1058_RS08845 -6.0 -11.3 argininosuccinate synthase compare
HMPREF1058_RS17940 -6.0 -7.1 alpha-amylase compare
HMPREF1058_RS07185 -6.0 -11.4 anthranilate phosphoribosyltransferase compare
HMPREF1058_RS14785 -5.9 -7.0 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1058_RS06175 -5.9 -4.1 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1058_RS08325 -5.9 -7.9 pyridoxine 5'-phosphate synthase compare
HMPREF1058_RS14725 -5.8 -14.1 cofactor-independent phosphoglycerate mutase compare
HMPREF1058_RS16760 -5.8 -4.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1058_RS14550 -5.7 -14.3 3-isopropylmalate dehydratase large subunit compare
HMPREF1058_RS11270 -5.7 -9.6 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1058_RS14610 -5.7 -18.6 adenylosuccinate synthase compare
HMPREF1058_RS14790 -5.7 -14.2 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS16820 -5.7 -7.8 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1058_RS10080 -5.7 -15.6 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1058_RS13795 -5.7 -12.7 DUF4954 family protein compare
HMPREF1058_RS08850 -5.6 -12.0 N-acetyltransferase compare
HMPREF1058_RS15075 -5.6 -13.5 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1058_RS15880 -5.6 -11.9 histidinol-phosphate transaminase compare
HMPREF1058_RS16835 -5.5 -7.5 ketol-acid reductoisomerase compare
HMPREF1058_RS14545 -5.5 -13.3 2-isopropylmalate synthase compare
HMPREF1058_RS14795 -5.4 -8.3 prephenate dehydratase compare
HMPREF1058_RS14720 -5.4 -19.3 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1058_RS00625 -5.4 -13.6 MFS transporter compare
HMPREF1058_RS06195 -5.4 -6.4 diaminopimelate decarboxylase compare
HMPREF1058_RS10995 -5.4 -8.3 phosphoribosylamine--glycine ligase compare
HMPREF1058_RS10075 -5.4 -14.7 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1058_RS17885 -5.4 -15.9 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
HMPREF1058_RS07955 -5.4 -11.5 phosphoribosylformylglycinamidine synthase compare
HMPREF1058_RS08025 -5.4 -8.2 phosphoribosylformylglycinamidine cyclo-ligase compare
HMPREF1058_RS03000 -5.3 -8.1 IMP dehydrogenase compare
HMPREF1058_RS14555 -5.3 -3.6 3-isopropylmalate dehydratase small subunit compare
HMPREF1058_RS03910 -5.3 -8.8 alpha amylase C-terminal domain-containing protein compare
HMPREF1058_RS10820 -5.2 -15.0 4-phosphoerythronate dehydrogenase PdxB compare
HMPREF1058_RS07175 -5.2 -11.5 anthranilate synthase component I family protein compare
HMPREF1058_RS04065 -5.1 -3.5 VWA domain-containing protein compare
HMPREF1058_RS16815 -5.1 -13.9 dihydroxy-acid dehydratase compare
HMPREF1058_RS11205 -5.0 -3.4 radical SAM protein compare
HMPREF1058_RS00635 -5.0 -18.5 substrate-binding domain-containing protein compare
HMPREF1058_RS08835 -4.9 -10.0 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1058_RS00560 -4.9 -3.4 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1058_RS04300 -4.8 -3.3 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1058_RS14560 -4.7 -12.9 2-isopropylmalate synthase compare
HMPREF1058_RS04295 -4.7 -3.3 3-phosphoglycerate dehydrogenase compare
HMPREF1058_RS14590 -4.7 -3.3 AraC family transcriptional regulator compare
HMPREF1058_RS00590 -4.7 -5.6 hypothetical protein compare
HMPREF1058_RS04080 -4.6 -4.5 AAA family ATPase compare
HMPREF1058_RS14490 -4.6 -15.2 S9 family peptidase compare
HMPREF1058_RS08855 -4.5 -7.5 arginine repressor compare
HMPREF1058_RS17155 -4.5 -3.1 dCMP deaminase family protein compare
HMPREF1058_RS12105 -4.4 -6.0 shikimate kinase compare
HMPREF1058_RS11490 -4.3 -5.1 redox-regulated ATPase YchF compare
HMPREF1058_RS06190 -4.2 -6.4 aspartate kinase compare
HMPREF1058_RS07180 -4.2 -6.4 aminodeoxychorismate/anthranilate synthase component II compare
HMPREF1058_RS17035 -4.2 -10.5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1058_RS05780 -4.2 -11.4 PD40 domain-containing protein compare
HMPREF1058_RS04050 -4.0 -2.8 protein BatD compare
HMPREF1058_RS06160 -4.0 -8.7 formyltetrahydrofolate deformylase compare
HMPREF1058_RS14005 -4.0 -2.7 3-dehydroquinate synthase compare
HMPREF1058_RS04045 -3.9 -6.5 tetratricopeptide repeat protein compare
HMPREF1058_RS04070 -3.9 -5.9 hypothetical protein compare
HMPREF1058_RS06225 -3.8 -5.2 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1058_RS06165 -3.8 -7.5 imidazole glycerol phosphate synthase subunit HisH compare
HMPREF1058_RS00700 -3.8 -11.4 DUF4831 family protein compare
HMPREF1058_RS14930 -3.7 -11.7 AraC family transcriptional regulator compare
HMPREF1058_RS02170 -3.7 -11.0 hypothetical protein compare
HMPREF1058_RS11040 -3.7 -10.8 polysaccharide deacetylase family protein compare
HMPREF1058_RS16730 -3.7 -2.5 chorismate synthase compare
HMPREF1058_RS01650 -3.7 -7.0 hypothetical protein compare
HMPREF1058_RS13970 -3.6 -2.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
HMPREF1058_RS08535 -3.4 -4.2 elongation factor P compare
HMPREF1058_RS18265 -3.4 -2.4 aspartate 1-decarboxylase compare
HMPREF1058_RS02115 -3.4 -12.3 NADP-specific glutamate dehydrogenase compare
HMPREF1058_RS05140 -3.4 -4.0 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1058_RS12110 -3.4 -10.6 biosynthetic arginine decarboxylase compare
HMPREF1058_RS10955 -3.3 -8.4 phosphatase PAP2 family protein compare
HMPREF1058_RS03535 -3.2 -2.2 UvrD-helicase domain-containing protein compare
HMPREF1058_RS03085 -3.0 -3.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1058_RS09685 -3.0 -12.9 tetratricopeptide repeat protein compare
HMPREF1058_RS17130 -3.0 -2.0 tetratricopeptide repeat protein compare
HMPREF1058_RS16845 -3.0 -2.9 SurA N-terminal domain-containing protein compare
HMPREF1058_RS07670 -2.9 -4.7 HAMP domain-containing histidine kinase compare
HMPREF1058_RS12795 -2.9 -7.0 CYTH domain-containing protein compare
HMPREF1058_RS11215 -2.8 -4.9 DUF4294 domain-containing protein compare
HMPREF1058_RS17080 -2.8 -3.4 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS07655 -2.7 -2.9 hypothetical protein compare
HMPREF1058_RS15435 -2.7 -13.3 hypothetical protein compare
HMPREF1058_RS15395 -2.7 -1.8 dihydroorotase compare
HMPREF1058_RS17205 -2.7 -3.1 DUF4199 domain-containing protein compare
HMPREF1058_RS14215 -2.7 -4.4 (d)CMP kinase compare
HMPREF1058_RS17815 -2.7 -8.5 MFS transporter compare
HMPREF1058_RS03970 -2.6 -1.8 dihydroorotate dehydrogenase electron transfer subunit compare
HMPREF1058_RS14385 -2.6 -14.8 DUF4435 domain-containing protein compare
HMPREF1058_RS02755 -2.6 -4.0 translocation/assembly module TamB domain-containing protein compare
HMPREF1058_RS02750 -2.6 -4.2 BamA/TamA family outer membrane protein compare
HMPREF1058_RS14380 -2.5 -6.6 AAA family ATPase compare
HMPREF1058_RS05145 -2.5 -8.7 ATP-binding protein compare
HMPREF1058_RS17965 -2.5 -2.5 DUF452 family protein compare
HMPREF1058_RS04375 -2.5 -11.5 carbon-nitrogen hydrolase compare
HMPREF1058_RS04075 -2.5 -3.8 DUF58 domain-containing protein compare
HMPREF1058_RS04370 -2.5 -6.0 agmatine deiminase family protein compare
HMPREF1058_RS15375 -2.5 -3.2 DUF4369 domain-containing protein compare
HMPREF1058_RS14465 -2.5 -2.9 enoyl-ACP reductase compare
HMPREF1058_RS07440 -2.5 -7.3 aspartate--ammonia ligase compare
HMPREF1058_RS16825 -2.5 -7.0 acetolactate synthase small subunit compare
HMPREF1058_RS15975 -2.5 -7.5 saccharopine dehydrogenase family protein compare
HMPREF1058_RS17950 -2.4 -7.0 biotin synthase BioB compare
HMPREF1058_RS00620 -2.4 -10.7 GH32 C-terminal domain-containing protein compare
HMPREF1058_RS03510 -2.4 -7.8 YebC/PmpR family DNA-binding transcriptional regulator compare
HMPREF1058_RS09610 -2.4 -9.3 peptide chain release factor N(5)-glutamine methyltransferase compare
HMPREF1058_RS17955 -2.4 -9.8 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
HMPREF1058_RS14220 -2.4 -5.2 energy transducer TonB compare
HMPREF1058_RS16510 -2.4 -4.5 methylmalonyl-CoA epimerase compare
HMPREF1058_RS17975 -2.4 -9.5 ATP-dependent dethiobiotin synthetase BioD compare
HMPREF1058_RS16625 -2.4 -8.5 hypothetical protein compare
HMPREF1058_RS19090 -2.4 -1.4 tRNA-Phe compare
HMPREF1058_RS16750 -2.4 -1.6 shikimate dehydrogenase compare
HMPREF1058_RS06080 -2.3 -6.3 glutamine synthetase III compare
HMPREF1058_RS15920 -2.3 -3.1 hypothetical protein compare
HMPREF1058_RS16620 -2.3 -11.2 GGGtGRT protein compare
HMPREF1058_RS17930 -2.3 -9.4 glycogen debranching enzyme N-terminal domain-containing protein compare
HMPREF1058_RS10720 -2.3 -6.0 GH3 auxin-responsive promoter family protein compare
HMPREF1058_RS13350 -2.3 -7.1 Trk system potassium transporter TrkA compare
HMPREF1058_RS14505 -2.3 -2.2 mechanosensitive ion channel compare
HMPREF1058_RS11310 -2.3 -6.5 undecaprenyl-diphosphate phosphatase compare
HMPREF1058_RS01745 -2.2 -6.8 PorT family protein compare
HMPREF1058_RS02135 -2.2 -12.6 phosphoenolpyruvate synthase compare
HMPREF1058_RS03265 -2.2 -12.3 2-iminoacetate synthase ThiH compare
HMPREF1058_RS05930 -2.2 -8.7 MFS transporter compare
HMPREF1058_RS09445 -2.2 -2.0 tyrosine-type recombinase/integrase compare
HMPREF1058_RS15665 -2.2 -5.1 MFS transporter compare
HMPREF1058_RS01395 -2.1 -8.4 cobyric acid synthase compare
HMPREF1058_RS03290 -2.1 -4.2 thiamine phosphate synthase compare
HMPREF1058_RS18205 -2.1 -6.6 ferrous iron transport protein B compare
HMPREF1058_RS02540 -2.1 -4.7 cyclodeaminase/cyclohydrolase family protein compare
HMPREF1058_RS03260 -2.1 -8.8 HesA/MoeB/ThiF family protein compare
HMPREF1058_RS08065 -2.1 -10.8 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
HMPREF1058_RS06820 -2.0 -11.8 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
HMPREF1058_RS01575 -2.0 -7.4 precorrin-2 C(20)-methyltransferase compare
HMPREF1058_RS06600 -2.0 -5.0 DedA family protein compare
HMPREF1058_RS10840 -2.0 -2.7 hypothetical protein compare
HMPREF1058_RS03530 -2.0 -1.9 PD-(D/E)XK nuclease family protein compare
HMPREF1058_RS17960 -2.0 -9.4 8-amino-7-oxononanoate synthase compare
HMPREF1058_RS02525 -2.0 -10.7 glutamate formimidoyltransferase compare
HMPREF1058_RS10970 -2.0 -8.6 ribonuclease R compare
HMPREF1058_RS14600 -1.9 -6.2 DNA alkylation repair protein compare
HMPREF1058_RS17970 -1.9 -7.0 malonyl-ACP O-methyltransferase BioC compare
HMPREF1058_RS14205 -1.9 -11.6 6-phosphofructokinase compare
HMPREF1058_RS01570 -1.9 -7.1 ABC transporter substrate-binding protein compare
HMPREF1058_RS16490 -1.9 -7.9 sodium ion-translocating decarboxylase subunit beta compare
HMPREF1058_RS17050 -1.9 -7.8 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1058_RS03310 -1.8 -7.8 carboxynorspermidine decarboxylase compare
HMPREF1058_RS01640 -1.8 -12.0 BamA/TamA family outer membrane protein compare
HMPREF1058_RS03280 -1.8 -9.5 phosphomethylpyrimidine synthase ThiC compare
HMPREF1058_RS01405 -1.8 -6.5 cobyrinate a,c-diamide synthase compare
HMPREF1058_RS03075 -1.8 -7.1 DNA helicase RecQ compare
HMPREF1058_RS14200 -1.8 -9.9 methylmalonyl Co-A mutase-associated GTPase MeaB compare
HMPREF1058_RS05925 -1.7 -2.5 DUF5024 domain-containing protein compare
HMPREF1058_RS09750 -1.7 -6.2 glycosyltransferase compare
HMPREF1058_RS03295 -1.7 -1.9 sulfur carrier protein ThiS compare
HMPREF1058_RS17060 -1.7 -7.4 HAD family hydrolase compare
HMPREF1058_RS15660 -1.7 -8.9 galactokinase compare
HMPREF1058_RS15520 -1.7 -4.0 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1058_RS01550 -1.7 -6.0 precorrin-4 C(11)-methyltransferase compare
HMPREF1058_RS11535 -1.7 -7.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
HMPREF1058_RS03285 -1.7 -6.7 thiazole synthase compare
HMPREF1058_RS02405 -1.7 -12.3 methylmalonyl-CoA mutase small subunit compare
HMPREF1058_RS01565 -1.7 -6.4 iron ABC transporter permease compare
HMPREF1058_RS17945 -1.7 -5.7 hypothetical protein compare
HMPREF1058_RS09730 -1.7 -8.1 LicD family protein compare
HMPREF1058_RS01385 -1.7 -7.4 cobalamin biosynthesis protein CobD compare
HMPREF1058_RS12345 -1.6 -11.0 4-alpha-glucanotransferase compare
HMPREF1058_RS06310 -1.6 -6.6 UDP-glucose 4-epimerase GalE compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in carbon source experiments

For carbon source D-Fructose across organisms