Experiment set1IT019 for Phocaeicola vulgatus CL09T03C04

Compare to:

D-Fructose 20 mM carbon source

200 most detrimental genes:

  gene name fitness t score description  
HMPREF1058_RS14270 +3.0 22.7 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1058_RS12035 +3.0 19.9 phosphate butyryltransferase compare
HMPREF1058_RS07675 +2.5 19.7 elongation factor G compare
HMPREF1058_RS20485 +1.5 4.0 mobilization protein compare
HMPREF1058_RS03980 +1.3 2.2 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
HMPREF1058_RS16775 +1.3 6.4 tRNA pseudouridine(38-40) synthase TruA compare
HMPREF1058_RS15550 +1.3 1.8 thioredoxin family protein compare
HMPREF1058_RS02780 +1.2 10.2 sigma-54-dependent Fis family transcriptional regulator compare
HMPREF1058_RS10945 +1.2 9.8 tRNA dihydrouridine synthase DusB compare
HMPREF1058_RS20985 +1.2 1.8 tyrosine-type recombinase/integrase compare
HMPREF1058_RS12040 +1.1 8.3 butyrate kinase compare
HMPREF1058_RS07575 +1.1 3.8 MCE family protein compare
HMPREF1058_RS0119685 +1.1 2.6 DUF4133 domain-containing protein compare
HMPREF1058_RS03215 +1.1 8.4 AhpC/TSA family protein compare
HMPREF1058_RS09990 +1.1 8.5 5'-methylthioadenosine/adenosylhomocysteine nucleosidase compare
HMPREF1058_RS02775 +1.1 9.0 response regulator compare
HMPREF1058_RS13780 +1.0 9.5 TonB-dependent receptor compare
HMPREF1058_RS04290 +1.0 6.7 DUF1015 domain-containing protein compare
HMPREF1058_RS21520 +1.0 1.5 hypothetical protein compare
HMPREF1058_RS13785 +1.0 8.2 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS18235 +1.0 4.5 3'-5' exonuclease compare
HMPREF1058_RS00245 +0.9 3.7 DUF5110 domain-containing protein compare
HMPREF1058_RS01820 +0.9 1.6 hypothetical protein compare
HMPREF1058_RS01665 +0.9 3.4 TraR/DksA C4-type zinc finger protein compare
HMPREF1058_RS09980 +0.8 1.2 PcfK-like family protein compare
HMPREF1058_RS08615 +0.8 6.3 RluA family pseudouridine synthase compare
HMPREF1058_RS01975 +0.8 3.0 hypothetical protein compare
HMPREF1058_RS09955 +0.8 1.8 hypothetical protein compare
HMPREF1058_RS15755 +0.8 5.5 HlyD family efflux transporter periplasmic adaptor subunit compare
HMPREF1058_RS14680 +0.8 4.1 homoserine O-succinyltransferase compare
HMPREF1058_RS13910 +0.8 4.1 nucleoside deaminase compare
HMPREF1058_RS18570 +0.8 4.1 GNAT family N-acetyltransferase compare
HMPREF1058_RS14285 +0.8 2.3 DUF5056 domain-containing protein compare
HMPREF1058_RS03775 +0.8 4.8 biotin/lipoyl-binding protein compare
HMPREF1058_RS04515 +0.8 1.5 hypothetical protein compare
HMPREF1058_RS12455 +0.7 0.9 dUTP diphosphatase compare
HMPREF1058_RS01535 +0.7 1.7 flavin reductase family protein compare
HMPREF1058_RS01920 +0.7 2.0 hypothetical protein compare
HMPREF1058_RS17565 +0.7 1.1 tyrosine-type recombinase/integrase compare
HMPREF1058_RS08000 +0.7 2.3 hypothetical protein compare
HMPREF1058_RS09890 +0.7 1.0 DUF3876 domain-containing protein compare
HMPREF1058_RS21340 +0.6 2.2 hypothetical protein compare
HMPREF1058_RS13750 +0.6 5.5 TonB-dependent receptor compare
HMPREF1058_RS08775 +0.6 1.7 DUF1893 domain-containing protein compare
HMPREF1058_RS14290 +0.6 3.0 sigma-70 family RNA polymerase sigma factor compare
HMPREF1058_RS03035 +0.6 2.2 hypothetical protein compare
HMPREF1058_RS09000 +0.6 3.1 FecR domain-containing protein compare
HMPREF1058_RS14130 +0.6 2.5 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
HMPREF1058_RS0119340 +0.6 1.9 IS1182 family transposase compare
HMPREF1058_RS05620 +0.6 2.1 HipA N-terminal domain-containing protein compare
HMPREF1058_RS18495 +0.6 2.6 nucleotidyltransferase family protein compare
HMPREF1058_RS20490 +0.6 3.0 RNA polymerase subunit sigma-70 compare
HMPREF1058_RS03110 +0.6 3.0 ABC transporter ATP-binding protein compare
HMPREF1058_RS09925 +0.6 1.7 conjugal transfer protein TraO compare
HMPREF1058_RS03130 +0.6 4.1 DUF177 domain-containing protein compare
HMPREF1058_RS02785 +0.6 2.6 hypothetical protein compare
HMPREF1058_RS13745 +0.6 4.4 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS14035 +0.6 1.2 hypothetical protein compare
HMPREF1058_RS14225 +0.5 2.7 polyprenyl synthetase family protein compare
HMPREF1058_RS0119820 +0.5 1.8 hypothetical protein compare
HMPREF1058_RS05210 +0.5 1.7 SDR family oxidoreductase compare
HMPREF1058_RS04425 +0.5 3.0 mechanosensitive ion channel compare
HMPREF1058_RS01895 +0.5 2.4 hypothetical protein compare
HMPREF1058_RS01720 +0.5 2.2 lysine exporter LysO family protein compare
HMPREF1058_RS03605 +0.5 3.0 glycosyltransferase family 2 protein compare
HMPREF1058_RS06210 +0.5 2.1 antibiotic biosynthesis monooxygenase compare
HMPREF1058_RS10220 +0.5 2.0 hypothetical protein compare
HMPREF1058_RS14085 +0.5 3.1 5'/3'-nucleotidase SurE compare
HMPREF1058_RS18935 +0.5 1.1 hypothetical protein compare
HMPREF1058_RS01075 +0.5 1.8 site-specific integrase compare
HMPREF1058_RS21355 +0.5 1.6 mobilization protein compare
HMPREF1058_RS16110 +0.5 2.2 hypothetical protein compare
HMPREF1058_RS01730 +0.5 3.0 Cys-tRNA(Pro) deacylase compare
HMPREF1058_RS13000 +0.5 3.5 hypothetical protein compare
HMPREF1058_RS01605 +0.5 2.8 MBL fold metallo-hydrolase compare
HMPREF1058_RS12815 +0.5 4.2 sodium-dependent transporter compare
HMPREF1058_RS18780 +0.5 3.7 aminomethyl-transferring glycine dehydrogenase compare
HMPREF1058_RS10910 +0.5 4.3 glycosyltransferase family 39 protein compare
HMPREF1058_RS04575 +0.5 1.0 hypothetical protein compare
HMPREF1058_RS21185 +0.5 1.3 hypothetical protein compare
HMPREF1058_RS21480 +0.5 1.5 hypothetical protein compare
HMPREF1058_RS14295 +0.5 2.7 hypothetical protein compare
HMPREF1058_RS03720 +0.5 3.6 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
HMPREF1058_RS16395 +0.5 3.0 TrkA family potassium uptake protein compare
HMPREF1058_RS18680 +0.5 2.2 F0F1 ATP synthase subunit B compare
HMPREF1058_RS18465 +0.5 2.4 glycosyltransferase family 4 protein compare
HMPREF1058_RS03370 +0.5 2.4 transcriptional regulator compare
HMPREF1058_RS0119485 +0.5 1.5 DUF1573 domain-containing protein compare
HMPREF1058_RS03890 +0.5 3.6 phosphatidylinositol-4-phosphate 5-kinase compare
HMPREF1058_RS02065 +0.5 0.9 hypothetical protein compare
HMPREF1058_RS16630 +0.5 1.6 DMP19 family protein compare
HMPREF1058_RS0119645 +0.5 3.0 AAA family ATPase compare
HMPREF1058_RS04270 +0.5 0.8 ferredoxin compare
HMPREF1058_RS16770 +0.5 1.6 hypothetical protein compare
HMPREF1058_RS02225 +0.5 1.6 exodeoxyribonuclease VII small subunit compare
HMPREF1058_RS03895 +0.5 2.2 inositol monophosphatase compare
HMPREF1058_RS0119320 +0.5 1.4 hypothetical protein compare
HMPREF1058_RS13205 +0.5 1.6 DNA primase compare
HMPREF1058_RS13770 +0.5 4.0 TonB-dependent receptor compare
HMPREF1058_RS10120 +0.5 1.4 hypothetical protein compare
HMPREF1058_RS17005 +0.4 1.9 DUF4251 domain-containing protein compare
HMPREF1058_RS04040 +0.4 2.4 phosphatase PAP2 family protein compare
HMPREF1058_RS07820 +0.4 1.5 NVEALA domain-containing protein compare
HMPREF1058_RS15795 +0.4 3.2 TolC family protein compare
HMPREF1058_RS15215 +0.4 2.9 hypothetical protein compare
HMPREF1058_RS18005 +0.4 2.0 anaerobic C4-dicarboxylate transporter compare
HMPREF1058_RS12130 +0.4 2.5 DUF2807 domain-containing protein compare
HMPREF1058_RS08770 +0.4 2.7 cupin domain-containing protein compare
HMPREF1058_RS06565 +0.4 1.5 phosphate signaling complex protein PhoU compare
HMPREF1058_RS04585 +0.4 2.0 hypothetical protein compare
HMPREF1058_RS07010 +0.4 2.7 endolytic transglycosylase MltG compare
HMPREF1058_RS04655 +0.4 2.8 phosphatase PAP2 family protein compare
HMPREF1058_RS09700 +0.4 1.7 methionine--tRNA ligase compare
HMPREF1058_RS14470 +0.4 3.6 hypothetical protein compare
HMPREF1058_RS07765 +0.4 2.5 efflux RND transporter periplasmic adaptor subunit compare
HMPREF1058_RS10155 +0.4 1.2 hypothetical protein compare
HMPREF1058_RS21050 +0.4 1.1 transposase compare
HMPREF1058_RS14065 +0.4 3.2 lytic transglycosylase domain-containing protein compare
HMPREF1058_RS00540 +0.4 2.7 M23 family metallopeptidase compare
HMPREF1058_RS15860 +0.4 1.5 Dabb family protein compare
HMPREF1058_RS16525 +0.4 1.2 hypothetical protein compare
HMPREF1058_RS13900 +0.4 1.3 YraN family protein compare
HMPREF1058_RS03860 +0.4 2.2 HlyD family efflux transporter periplasmic adaptor subunit compare
HMPREF1058_RS16595 +0.4 1.5 hypothetical protein compare
HMPREF1058_RS01155 +0.4 2.1 TolC family protein compare
HMPREF1058_RS0119435 +0.4 2.1 IS982 family transposase compare
HMPREF1058_RS03400 +0.4 2.6 long-chain fatty acid--CoA ligase compare
HMPREF1058_RS06710 +0.4 2.4 DUF4422 domain-containing protein compare
HMPREF1058_RS0119715 +0.4 1.7 hypothetical protein compare
HMPREF1058_RS16810 +0.4 1.9 hypothetical protein compare
HMPREF1058_RS10710 +0.4 2.9 DUF3108 domain-containing protein compare
HMPREF1058_RS0119755 +0.4 0.8 hypothetical protein compare
HMPREF1058_RS02155 +0.4 2.1 ParB-like nuclease domain-containing protein compare
HMPREF1058_RS17740 +0.4 2.1 glycoside hydrolase family 28 protein compare
HMPREF1058_RS21070 +0.4 1.6 potassium-transporting ATPase subunit F compare
HMPREF1058_RS04025 +0.4 2.4 hypothetical protein compare
HMPREF1058_RS21720 +0.4 1.6 ribonucleoside-triphosphate reductase compare
HMPREF1058_RS04565 +0.4 1.0 hypothetical protein compare
HMPREF1058_RS10500 +0.4 1.0 HU family DNA-binding protein compare
HMPREF1058_RS11485 +0.4 2.6 ketopantoate reductase family protein compare
HMPREF1058_RS17700 +0.4 1.0 chaperone modulator CbpM compare
HMPREF1058_RS12775 +0.4 1.2 hypothetical protein compare
HMPREF1058_RS03565 +0.4 1.2 DUF3990 domain-containing protein compare
HMPREF1058_RS09830 +0.4 2.3 ATP-binding protein compare
HMPREF1058_RS12050 +0.4 1.8 response regulator transcription factor compare
HMPREF1058_RS04690 +0.4 3.0 cation:proton antiporter compare
HMPREF1058_RS01680 +0.4 1.6 M48 family metallopeptidase compare
HMPREF1058_RS10110 +0.4 1.7 hypothetical protein compare
HMPREF1058_RS18785 +0.4 2.5 MBL fold metallo-hydrolase compare
HMPREF1058_RS12290 +0.4 2.3 DUF3109 family protein compare
HMPREF1058_RS04950 +0.4 0.4 hypothetical protein compare
HMPREF1058_RS13090 +0.4 2.2 UpxY family transcription antiterminator compare
HMPREF1058_RS11220 +0.4 0.9 RNA methyltransferase compare
HMPREF1058_RS10980 +0.4 1.3 hypothetical protein compare
HMPREF1058_RS04485 +0.4 1.1 hypothetical protein compare
HMPREF1058_RS02725 +0.4 2.2 DUF5060 domain-containing protein compare
HMPREF1058_RS21005 +0.4 0.8 nitrous oxide-stimulated promoter family protein compare
HMPREF1058_RS00690 +0.4 1.6 DUF3332 domain-containing protein compare
HMPREF1058_RS03940 +0.3 2.2 Nif3-like dinuclear metal center hexameric protein compare
HMPREF1058_RS03450 +0.3 1.1 hypothetical protein compare
HMPREF1058_RS09715 +0.3 1.8 hypothetical protein compare
HMPREF1058_RS00615 +0.3 2.9 TonB-dependent receptor compare
HMPREF1058_RS0119805 +0.3 2.3 lysine exporter LysO family protein compare
HMPREF1058_RS15060 +0.3 2.3 outer membrane beta-barrel protein compare
HMPREF1058_RS14805 +0.3 1.8 DJ-1/PfpI family protein compare
HMPREF1058_RS14685 +0.3 2.7 U32 family peptidase compare
HMPREF1058_RS18805 +0.3 2.1 hypothetical protein compare
HMPREF1058_RS17615 +0.3 1.8 inorganic phosphate transporter compare
HMPREF1058_RS03455 +0.3 0.7 hypothetical protein compare
HMPREF1058_RS01780 +0.3 1.7 3'-5' exonuclease compare
HMPREF1058_RS01350 +0.3 1.9 JAB domain-containing protein compare
HMPREF1058_RS02770 +0.3 1.5 MATE family efflux transporter compare
HMPREF1058_RS14140 +0.3 2.4 aminoacyl-histidine dipeptidase compare
HMPREF1058_RS03935 +0.3 2.0 hypothetical protein compare
HMPREF1058_RS13775 +0.3 2.6 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1058_RS03355 +0.3 2.1 efflux RND transporter periplasmic adaptor subunit compare
HMPREF1058_RS18690 +0.3 2.3 F0F1 ATP synthase subunit alpha compare
HMPREF1058_RS05015 +0.3 1.3 twin-arginine translocase TatA/TatE family subunit compare
HMPREF1058_RS01645 +0.3 1.3 RNA methyltransferase compare
HMPREF1058_RS10200 +0.3 1.3 hypothetical protein compare
HMPREF1058_RS18455 +0.3 1.5 hypothetical protein compare
HMPREF1058_RS05125 +0.3 2.0 hypothetical protein compare
HMPREF1058_RS01105 +0.3 1.9 hypothetical protein compare
HMPREF1058_RS08355 +0.3 0.8 hypothetical protein compare
HMPREF1058_RS20840 +0.3 1.3 NVEALA domain-containing protein compare
HMPREF1058_RS12785 +0.3 2.5 long-chain fatty acid--CoA ligase compare
HMPREF1058_RS15670 +0.3 1.3 galactose mutarotase compare
HMPREF1058_RS04685 +0.3 1.8 glycine cleavage system aminomethyltransferase GcvT compare
HMPREF1058_RS13960 +0.3 1.8 metal ABC transporter permease compare
HMPREF1058_RS18170 +0.3 0.7 MobC family plasmid mobilization relaxosome protein compare
HMPREF1058_RS00605 +0.3 2.2 prolipoprotein diacylglyceryl transferase compare
HMPREF1058_RS03445 +0.3 1.8 hypothetical protein compare
HMPREF1058_RS0119260 +0.3 0.4 hypothetical protein compare
HMPREF1058_RS02575 +0.3 1.7 Crp/Fnr family transcriptional regulator compare
HMPREF1058_RS06035 +0.3 1.5 glutamine-hydrolyzing GMP synthase compare
HMPREF1058_RS01785 +0.3 2.3 patatin-like phospholipase family protein compare
HMPREF1058_RS03835 +0.3 1.5 AraC family transcriptional regulator compare
HMPREF1058_RS14605 +0.3 0.8 transcriptional repressor compare
HMPREF1058_RS05020 +0.3 1.6 twin-arginine translocase subunit TatC compare
HMPREF1058_RS07465 +0.3 1.2 S26 family signal peptidase compare


Specific Phenotypes

None in this experiment

For Phocaeicola vulgatus CL09T03C04 in carbon source experiments

For carbon source D-Fructose across organisms