Experiment set1IT019 for Burkholderia phytofirmans PsJN

Compare to:

L-Histidine carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS07555 -9.1 -6.3 Histidine ammonia-lyase (EC 4.3.1.3) (from data) conserved
BPHYT_RS16270 -8.3 -5.7 phosphoglycerate kinase compare
BPHYT_RS07565 -8.1 -5.6 urocanate hydratase compare
BPHYT_RS07585 -7.6 -5.1 N-formylglutamate deformylase (EC 3.5.1.68) (from data) conserved
BPHYT_RS17395 -7.3 -2.7 anthranilate synthase subunit II compare
BPHYT_RS02610 -7.1 -6.4 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS33835 -6.9 -10.6 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS33880 -6.7 -10.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS06555 -6.6 -10.1 ketol-acid reductoisomerase compare
BPHYT_RS09500 -6.4 -4.9 glucose-6-phosphate isomerase compare
BPHYT_RS17890 -6.3 -4.0 shikimate kinase compare
BPHYT_RS06545 -6.3 -12.1 acetolactate synthase compare
BPHYT_RS33875 -6.2 -10.8 tryptophan synthase subunit alpha compare
BPHYT_RS17400 -6.1 -11.6 anthranilate phosphoribosyltransferase compare
BPHYT_RS14845 -6.1 -4.2 cysteine synthase compare
BPHYT_RS18320 -6.0 -13.5 orotate phosphoribosyltransferase compare
BPHYT_RS33900 -6.0 -15.4 3-isopropylmalate dehydrogenase compare
BPHYT_RS14915 -5.9 -8.4 phosphoserine aminotransferase compare
BPHYT_RS33915 -5.9 -9.1 isopropylmalate isomerase compare
BPHYT_RS09515 -5.9 -5.7 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS06900 -5.8 -8.0 aspartate aminotransferase compare
BPHYT_RS16710 -5.7 -2.1 LysR family transcriptional regulator compare
BPHYT_RS03150 -5.7 -13.2 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS14895 -5.5 -5.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS07580 -5.5 -4.7 N-formimino-L-glutamate deiminase compare
BPHYT_RS15915 -5.5 -14.6 ornithine carbamoyltransferase compare
BPHYT_RS13705 -5.4 -5.1 chorismate synthase compare
BPHYT_RS08850 -5.4 -3.7 transcriptional regulator compare
BPHYT_RS14190 -5.3 -11.9 carbamoyl phosphate synthase large subunit compare
BPHYT_RS02590 -5.3 -8.5 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS17405 -5.3 -1.9 indole-3-glycerol phosphate synthase compare
BPHYT_RS15920 -5.3 -12.5 argininosuccinate synthase compare
BPHYT_RS12845 -5.2 -21.6 ATPase compare
BPHYT_RS03640 -5.2 -3.6 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS16835 -5.2 -6.7 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS04955 -5.1 -3.3 methionyl-tRNA synthetase compare
BPHYT_RS33840 -5.0 -9.3 amidophosphoribosyltransferase compare
BPHYT_RS08960 -4.9 -3.1 threonine synthase compare
BPHYT_RS08955 -4.9 -7.4 homoserine dehydrogenase compare
BPHYT_RS12985 -4.8 -4.4 amino acid acetyltransferase compare
BPHYT_RS16905 -4.7 -5.5 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS17390 -4.7 -16.5 anthranilate synthase subunit I compare
BPHYT_RS14855 -4.7 -4.0 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS06405 -4.7 -8.8 phosphoribosylamine--glycine ligase compare
BPHYT_RS33645 -4.6 -6.2 homoserine kinase compare
BPHYT_RS14910 -4.6 -8.8 chorismate mutase compare
BPHYT_RS16675 -4.6 -3.1 dihydroorotase compare
BPHYT_RS17885 -4.5 -6.8 3-dehydroquinate synthase compare
BPHYT_RS01595 -4.5 -9.5 homoserine O-acetyltransferase compare
BPHYT_RS16255 -4.4 -7.2 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS07570 -4.3 -2.2 hypothetical protein compare
BPHYT_RS33865 -4.3 -12.4 tryptophan synthase alpha chain compare
BPHYT_RS33920 -4.2 -10.0 type II citrate synthase compare
BPHYT_RS06610 -4.2 -2.8 triosephosphate isomerase compare
BPHYT_RS03725 -4.2 -2.5 serine hydroxymethyltransferase compare
BPHYT_RS02955 -4.2 -12.6 formyltetrahydrofolate deformylase compare
BPHYT_RS14865 -4.1 -3.1 UDP-glucose 6-dehydrogenase compare
BPHYT_RS12055 -4.0 -17.6 phosphoenolpyruvate synthase compare
BPHYT_RS16245 -3.9 -5.0 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS03535 -3.8 -8.7 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS08565 -3.7 -1.8 dihydroorotate dehydrogenase compare
BPHYT_RS16840 -3.6 -4.9 transketolase compare
BPHYT_RS04725 -3.5 -6.9 sulfite reductase compare
BPHYT_RS35885 -3.5 -9.9 hypothetical protein compare
BPHYT_RS04965 -3.4 -9.8 ATP-binding protein compare
BPHYT_RS31910 -3.3 -3.2 hypothetical protein compare
BPHYT_RS04720 -3.2 -5.0 transcriptional regulator compare
BPHYT_RS10100 -2.9 -7.9 dihydroxy-acid dehydratase compare
BPHYT_RS02570 -2.8 -7.0 phosphocarrier protein HPr compare
BPHYT_RS13220 -2.8 -11.8 phosphomethylpyrimidine synthase compare
BPHYT_RS18705 -2.7 -2.6 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS15710 -2.7 -3.4 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS15620 -2.6 -4.3 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS06175 -2.5 -7.3 LPS biosynthesis compare
BPHYT_RS14195 -2.4 -3.2 carbamoyl phosphate synthase small subunit compare
BPHYT_RS36275 -2.3 -3.8 hypothetical protein compare
BPHYT_RS17380 -2.2 -9.8 ribulose-phosphate 3-epimerase compare
BPHYT_RS09385 -2.2 -1.7 FAD-dependent oxidoreductase compare
BPHYT_RS08030 -2.1 -6.2 transposase compare
BPHYT_RS03570 -2.1 -11.4 heat-inducible transcription repressor HrcA compare
BPHYT_RS04730 -2.0 -3.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS07575 -2.0 -2.5 imidazolonepropionase compare
BPHYT_RS26025 -2.0 -1.5 hypothetical protein compare
BPHYT_RS15645 -1.9 -8.4 nicotinate-nucleotide pyrophosphorylase compare
BPHYT_RS06685 -1.9 -3.2 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS33905 -1.9 -1.0 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS12840 -1.9 -4.6 pyruvate dehydrogenase compare
BPHYT_RS15075 -1.8 -3.3 dihydrokaempferol 4-reductase compare
BPHYT_RS15650 -1.8 -10.9 quinolinate synthetase compare
BPHYT_RS01590 -1.8 -6.5 methionine biosynthesis protein MetW compare
BPHYT_RS05960 -1.7 -5.8 endoribonuclease L-PSP compare
BPHYT_RS23840 -1.7 -3.5 methyltransferase compare
BPHYT_RS08950 -1.7 -5.4 aminotransferase compare
BPHYT_RS26685 -1.6 -2.0 precorrin-8X methylmutase compare
BPHYT_RS15590 -1.6 -8.2 amino acid ABC transporter ATPase compare
BPHYT_RS24010 -1.6 -4.5 L-histidine ABC transporter, permease component 2 (from data) compare
BPHYT_RS14900 -1.6 -3.1 prephenate dehydrogenase compare
BPHYT_RS06350 -1.5 -2.6 chemotaxis protein CheY compare
BPHYT_RS02690 -1.5 -8.9 protoheme IX farnesyltransferase compare
BPHYT_RS02865 -1.5 -2.6 hypothetical protein compare
BPHYT_RS21675 -1.5 -3.8 FAD-dependent oxidoreductase compare
BPHYT_RS15640 -1.4 -10.5 L-aspartate oxidase compare
BPHYT_RS15595 -1.4 -8.0 ABC transporter compare
BPHYT_RS28705 -1.4 -1.8 IclR family transcriptional regulator compare
BPHYT_RS14755 -1.4 -2.5 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS02860 -1.4 -1.4 membrane protein compare
BPHYT_RS07325 -1.4 -1.3 GntR family transcriptional regulator compare
BPHYT_RS06530 -1.3 -2.0 membrane protein compare
BPHYT_RS18340 -1.3 -1.6 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS09375 -1.3 -10.1 (2Fe-2S)-binding protein compare
BPHYT_RS15605 -1.2 -8.8 ABC transporter permease compare
BPHYT_RS24005 -1.2 -2.4 L-histidine ABC transporter, permease component 1 (from data) compare
BPHYT_RS24000 -1.2 -5.7 L-histidine ABC transporter, substrate-binding component (from data) compare
BPHYT_RS01885 -1.2 -7.5 branched-chain amino acid ABC transporter substrate-binding protein compare
BPHYT_RS14485 -1.2 -5.7 ribonuclease E compare
BPHYT_RS02685 -1.2 -7.5 cytochrome C oxidase subunit I compare
BPHYT_RS33580 -1.2 -3.2 geranyltranstransferase compare
BPHYT_RS20695 -1.2 -2.4 ribokinase compare
BPHYT_RS16470 -1.2 -3.9 DeoR faimly transcriptional regulator compare
BPHYT_RS15600 -1.2 -7.2 ABC transporter ATP-binding protein compare
BPHYT_RS10095 -1.2 -2.6 integrase compare
BPHYT_RS29620 -1.2 -1.0 hypothetical protein compare
BPHYT_RS02665 -1.1 -7.8 MFS transporter compare
BPHYT_RS02640 -1.1 -8.7 cytochrome C oxidase compare
BPHYT_RS16880 -1.1 -1.1 malic enzyme compare
BPHYT_RS06070 -1.1 -6.1 cytochrome C compare
BPHYT_RS06400 -1.1 -5.0 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS08975 -1.1 -2.8 molybdenum cofactor biosynthesis protein MoaE compare
BPHYT_RS15615 -1.1 -3.8 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS06065 -1.1 -6.4 cytochrome C compare
BPHYT_RS18760 -1.1 -2.7 flagellar biosynthesis protein FliT compare
BPHYT_RS17640 -1.1 -3.6 2-alkenal reductase compare
BPHYT_RS04385 -1.1 -1.8 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS22360 -1.1 -3.1 response regulator receiver compare
BPHYT_RS04740 -1.0 -4.6 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS01660 -1.0 -3.0 hypothetical protein compare
BPHYT_RS06345 -1.0 -6.1 sensor histidine kinase compare
BPHYT_RS02310 -1.0 -6.7 5-methyltetrahydrofolate--homocysteine methyltransferase compare
BPHYT_RS08245 -1.0 -5.3 anti-sigma factor compare
BPHYT_RS10345 -1.0 -1.0 flagellar motor protein MotB compare
BPHYT_RS02525 -1.0 -5.4 membrane protein compare
BPHYT_RS06410 -1.0 -1.5 transcriptional regulator compare
BPHYT_RS08965 -1.0 -2.7 molybdenum cofactor biosynthesis protein MoaA compare
BPHYT_RS35275 -1.0 -1.9 acetyltransferase compare
BPHYT_RS01485 -1.0 -1.1 histidine kinase compare
BPHYT_RS16085 -0.9 -2.9 DeoR faimly transcriptional regulator compare
BPHYT_RS22695 -0.9 -6.2 TetR family transcriptional regulator compare
BPHYT_RS14275 -0.9 -1.8 hypothetical protein compare
BPHYT_RS23570 -0.9 -5.3 chemotaxis protein CheY compare
BPHYT_RS11705 -0.9 -1.3 hypothetical protein compare
BPHYT_RS17520 -0.9 -3.9 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS11310 -0.9 -1.2 LysR family transcriptional regulator compare
BPHYT_RS18620 -0.9 -4.5 transcriptional regulator compare
BPHYT_RS35205 -0.9 -2.1 hypothetical protein compare
BPHYT_RS28870 -0.9 -2.2 MarR family transcriptional regulator compare
BPHYT_RS25970 -0.9 -1.0 urea amidolyase compare
BPHYT_RS18710 -0.9 -1.2 membrane protein compare
BPHYT_RS02595 -0.9 -1.0 sulfurtransferase compare
BPHYT_RS18615 -0.9 -4.0 5-formyltetrahydrofolate cyclo-ligase compare
BPHYT_RS04745 -0.9 -3.8 sulfate adenylyltransferase compare
BPHYT_RS05010 -0.9 -2.7 RpiR family transcriptional regulator compare
BPHYT_RS17945 -0.9 -1.7 cytochrome C biogenesis protein compare
BPHYT_RS28485 -0.9 -1.1 GntR family transcriptional regulator compare
BPHYT_RS15610 -0.9 -6.3 branched-chain amino acid ABC transporter substrate-binding protein compare
BPHYT_RS03400 -0.9 -0.8 ATP-dependent DNA helicase RecG compare
BPHYT_RS02285 -0.9 -3.5 cell division protein compare
BPHYT_RS08335 -0.9 -1.2 hypothetical protein compare
BPHYT_RS34430 -0.8 -1.0 2-keto-4-pentenoate hydratase compare
BPHYT_RS20790 -0.8 -1.6 TetR family transcriptional regulator compare
BPHYT_RS16430 -0.8 -6.8 cytochrome C compare
BPHYT_RS14715 -0.8 -4.6 molybdenum cofactor biosynthesis protein MogA compare
BPHYT_RS17265 -0.8 -1.4 cell division protein compare
BPHYT_RS00915 -0.8 -5.6 IclR family transcriptional regulator compare
BPHYT_RS14490 -0.8 -6.0 molybdenum cofactor biosynthesis protein MoeA compare
BPHYT_RS10740 -0.8 -1.3 LuxR family transcriptional regulator compare
BPHYT_RS29085 -0.8 -1.8 LysR family transcriptional regulator compare
BPHYT_RS08905 -0.8 -2.3 peroxiredoxin compare
BPHYT_RS11125 -0.8 -1.3 alkylhydroperoxidase compare
BPHYT_RS34295 -0.8 -0.9 fimbrial protein compare
BPHYT_RS02635 -0.8 -5.0 membrane protein compare
BPHYT_RS16320 -0.8 -3.1 cyclic pyranopterin monophosphate synthase accessory protein compare
BPHYT_RS09585 -0.8 -1.5 hypothetical protein compare
BPHYT_RS33850 -0.8 -1.5 sporulation protein compare
BPHYT_RS20750 -0.8 -1.6 LacI family transcriptional regulator compare
BPHYT_RS00380 -0.8 -1.9 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS18590 -0.8 -0.9 hypothetical protein compare
BPHYT_RS17050 -0.8 -1.6 hypothetical protein compare
BPHYT_RS01630 -0.8 -1.5 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS20280 -0.8 -2.1 hypothetical protein compare
BPHYT_RS02575 -0.8 -4.8 phosphoenolpyruvate-protein phosphotransferase compare
BPHYT_RS33610 -0.8 -1.0 DNA polymerase I compare
BPHYT_RS04290 -0.8 -1.7 glycosyl transferase family 2 compare
BPHYT_RS03240 -0.8 -2.3 formate dehydrogenase accessory protein FdhD compare
BPHYT_RS18280 -0.7 -4.2 TetR family transcriptional regulator compare
BPHYT_RS20755 -0.7 -1.6 fuconate dehydratase compare
BPHYT_RS09465 -0.7 -1.5 transcriptional regulator compare
BPHYT_RS27895 -0.7 -2.2 enoyl-CoA hydratase compare
BPHYT_RS29520 -0.7 -0.8 hypothetical protein compare
BPHYT_RS06975 -0.7 -1.6 glutamate racemase compare
BPHYT_RS16435 -0.7 -5.3 alcohol dehydrogenase compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source L-Histidine in Burkholderia phytofirmans PsJN

For carbon source L-Histidine across organisms