Experiment set1IT019 for Burkholderia phytofirmans PsJN

Compare to:

L-Histidine carbon source

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS06600 +1.3 3.5 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS33515 +1.2 7.1 porin compare
BPHYT_RS35310 +1.1 2.3 GCN5 family N-acetyltransferase compare
BPHYT_RS02760 +1.1 4.3 cytochrome BD oxidase subunit II compare
BPHYT_RS25000 +1.0 2.3 MFS transporter compare
BPHYT_RS29035 +1.0 2.4 arsenic transporter compare
BPHYT_RS10475 +1.0 2.0 mammalian cell entry protein compare
BPHYT_RS03730 +0.9 2.6 transcriptional repressor NrdR compare
BPHYT_RS30485 +0.9 1.4 ABC transporter ATP-binding protein compare
BPHYT_RS01435 +0.9 8.6 LysR family transcriptional regulator compare
BPHYT_RS28025 +0.9 1.7 3-hydroxyisobutyrate dehydrogenase compare
BPHYT_RS17830 +0.9 1.5 histidine kinase compare
BPHYT_RS21215 +0.9 5.0 Crp/Fnr family transcriptional regulator compare
BPHYT_RS13320 +0.9 1.4 allantoate amidohydrolase compare
BPHYT_RS12640 +0.9 6.3 phosphoesterase compare
BPHYT_RS26465 +0.9 1.5 metallophosphoesterase compare
BPHYT_RS02765 +0.9 2.2 cytochrome BD oxidase subunit I compare
BPHYT_RS19920 +0.9 1.6 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS15325 +0.9 3.1 ribonuclease PH compare
BPHYT_RS15320 +0.8 2.1 hypothetical protein compare
BPHYT_RS09390 +0.8 4.7 ABC transporter permease compare
BPHYT_RS08455 +0.8 6.4 ribonuclease R compare
BPHYT_RS21470 +0.8 1.5 6-hydroxynicotinate reductase compare
BPHYT_RS02770 +0.8 5.1 membrane protein compare
BPHYT_RS10285 +0.8 2.9 hypothetical protein compare
BPHYT_RS01625 +0.8 3.1 chemotaxis protein CheY compare
BPHYT_RS18965 +0.8 2.0 chemotaxis protein CheY compare
BPHYT_RS31840 +0.8 2.6 anhydrase compare
BPHYT_RS28360 +0.8 0.8 carboxymuconolactone decarboxylase compare
BPHYT_RS22815 +0.8 2.3 TonB-denpendent receptor compare
BPHYT_RS10500 +0.8 1.7 acetolactate synthase compare
BPHYT_RS14095 +0.8 2.5 phosphohistidine phosphatase compare
BPHYT_RS23250 +0.8 1.9 hypothetical protein compare
BPHYT_RS20630 +0.8 1.5 patatin compare
BPHYT_RS22030 +0.8 3.1 peptide ABC transporter ATP-binding protein compare
BPHYT_RS10540 +0.8 1.4 secretion protein compare
BPHYT_RS04170 +0.8 1.4 hypothetical protein compare
BPHYT_RS30880 +0.8 2.5 peptidase S13 compare
BPHYT_RS35400 +0.8 1.8 ABC transporter compare
BPHYT_RS13390 +0.7 1.2 IclR family transcriptional regulator compare
BPHYT_RS34280 +0.7 2.7 hypothetical protein compare
BPHYT_RS35675 +0.7 2.1 short-chain dehydrogenase compare
BPHYT_RS27560 +0.7 1.5 histidine kinase compare
BPHYT_RS26050 +0.7 2.7 ABC transporter permease compare
BPHYT_RS15290 +0.7 2.0 tRNA-Arg compare
BPHYT_RS05530 +0.7 2.8 hypothetical protein compare
BPHYT_RS22880 +0.7 2.6 hypothetical protein compare
BPHYT_RS08615 +0.7 1.2 hypothetical protein compare
BPHYT_RS35650 +0.7 2.8 DSBA oxidoreductase compare
BPHYT_RS30685 +0.7 2.4 ubiquinol oxidase subunit II, cyanide insensitive compare
BPHYT_RS07705 +0.7 1.2 arginine succinyltransferase compare
BPHYT_RS11795 +0.7 1.3 membrane protein compare
BPHYT_RS24045 +0.7 1.9 amino acid ABC transporter compare
BPHYT_RS22180 +0.7 1.8 hypothetical protein compare
BPHYT_RS22530 +0.7 1.8 N5,N10-methylene tetrahydromethanopterin reductase compare
BPHYT_RS20590 +0.7 2.4 methionine sulfoxide reductase A compare
BPHYT_RS08840 +0.7 2.0 LysR family transcriptional regulator compare
BPHYT_RS06105 +0.7 1.2 hypothetical protein compare
BPHYT_RS34640 +0.7 1.2 TetR family transcriptional regulator compare
BPHYT_RS18780 +0.7 2.4 flagellar motor switch protein FliG compare
BPHYT_RS26750 +0.7 1.8 aldolase compare
BPHYT_RS07080 +0.7 2.3 glutathione S-transferase compare
BPHYT_RS07920 +0.6 1.8 hypothetical protein compare
BPHYT_RS17800 +0.6 2.9 hypothetical protein compare
BPHYT_RS09310 +0.6 3.2 sensor histidine kinase compare
BPHYT_RS34815 +0.6 2.2 ABC transporter compare
BPHYT_RS31395 +0.6 2.4 thiamine pyrophosphate-binding protein compare
BPHYT_RS12290 +0.6 1.1 universal stress protein UspA compare
BPHYT_RS10465 +0.6 2.1 hypothetical protein compare
BPHYT_RS18775 +0.6 4.6 flagellar M-ring protein FliF compare
BPHYT_RS29945 +0.6 1.9 histidine kinase compare
BPHYT_RS01790 +0.6 5.5 LuxR family transcriptional regulator compare
BPHYT_RS28860 +0.6 1.0 haloacid dehalogenase compare
BPHYT_RS06375 +0.6 3.7 ribonuclease compare
BPHYT_RS15470 +0.6 4.6 tRNA (guanine-N(7)-)-methyltransferase compare
BPHYT_RS18945 +0.6 4.1 flagellar biosynthesis protein FlhB compare
BPHYT_RS01795 +0.6 4.0 histidine kinase compare
BPHYT_RS22190 +0.6 2.4 nucleoid-structuring protein H-NS compare
BPHYT_RS04455 +0.6 1.1 glycosyl transferase compare
BPHYT_RS03090 +0.6 1.1 hypothetical protein compare
BPHYT_RS15490 +0.6 3.3 coproporphyrinogen III oxidase compare
BPHYT_RS12665 +0.6 3.2 hypothetical protein compare
BPHYT_RS02180 +0.6 1.3 hypothetical protein compare
BPHYT_RS00705 +0.6 1.9 branched-chain amino acid ABC transporter substrate-binding protein compare
BPHYT_RS15455 +0.6 2.4 hypothetical protein compare
BPHYT_RS21505 +0.6 0.9 amidohydrolase compare
BPHYT_RS30415 +0.6 1.6 AraC family transcriptional regulator compare
BPHYT_RS08595 +0.6 1.3 multidrug transporter compare
BPHYT_RS29920 +0.6 0.8 hypothetical protein compare
BPHYT_RS28190 +0.6 2.3 porin compare
BPHYT_RS18890 +0.6 4.0 flagellar basal body rod protein FlgC compare
BPHYT_RS10915 +0.6 1.9 radical SAM protein compare
BPHYT_RS13915 +0.6 0.9 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase compare
BPHYT_RS25780 +0.6 0.9 DeoR faimly transcriptional regulator compare
BPHYT_RS36030 +0.6 1.7 hypothetical protein compare
BPHYT_RS18825 +0.6 2.4 flagellar biosynthesis protein FliP compare
BPHYT_RS10240 +0.6 0.8 translation initiation inhibitor compare
BPHYT_RS27890 +0.6 0.9 hypothetical protein compare
BPHYT_RS35165 +0.6 1.5 peptidase compare
BPHYT_RS07935 +0.6 1.3 Rrf2 family transcriptional regulator compare
BPHYT_RS32930 +0.6 1.6 NADPH:quinone reductase and related Zn-dependent oxidoreductase-like protein compare
BPHYT_RS20085 +0.6 1.5 mannosyltransferase compare
BPHYT_RS06485 +0.6 1.9 globin compare
BPHYT_RS24690 +0.6 4.1 ionic transporter y4hA compare
BPHYT_RS00115 +0.6 1.5 acetaldehyde dehydrogenase compare
BPHYT_RS18865 +0.6 3.4 flagellar L-ring protein FlgH compare
BPHYT_RS16420 +0.6 2.8 copper resistance protein CopD compare
BPHYT_RS29015 +0.5 1.0 RND transporter compare
BPHYT_RS18895 +0.5 3.7 flagellar basal body rod protein FlgB compare
BPHYT_RS21220 +0.5 3.0 universal stress protein A compare
BPHYT_RS21975 +0.5 1.1 2-dehydropantoate 2-reductase compare
BPHYT_RS13565 +0.5 1.7 bacterioferritin compare
BPHYT_RS10945 +0.5 1.2 2-deoxy-D-gluconate 3-dehydrogenase compare
BPHYT_RS17825 +0.5 0.9 transcriptional regulator compare
BPHYT_RS13420 +0.5 2.9 hypothetical protein compare
BPHYT_RS35730 +0.5 1.3 hypothetical protein compare
BPHYT_RS05235 +0.5 1.0 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase compare
BPHYT_RS08715 +0.5 1.2 adenylyl-sulfate kinase compare
BPHYT_RS25450 +0.5 0.9 membrane protein compare
BPHYT_RS00980 +0.5 0.8 GCN5 family acetyltransferase compare
BPHYT_RS28370 +0.5 0.9 peroxidase compare
BPHYT_RS18785 +0.5 1.2 flagellar assembly protein FliH compare
BPHYT_RS31515 +0.5 1.1 agmatinase compare
BPHYT_RS15835 +0.5 1.7 RNA polymerase subunit sigma24 compare
BPHYT_RS05515 +0.5 1.9 hypothetical protein compare
BPHYT_RS15035 +0.5 2.1 hypothetical protein compare
BPHYT_RS25490 +0.5 1.9 hypothetical protein compare
BPHYT_RS18835 +0.5 0.6 flagellar biosynthesis protein FliR compare
BPHYT_RS14595 +0.5 1.6 RNA-binding protein compare
BPHYT_RS27830 +0.5 1.8 universal stress protein A compare
BPHYT_RS10415 +0.5 2.8 taurine dioxygenase compare
BPHYT_RS25285 +0.5 1.1 AraC family transcriptional regulator compare
BPHYT_RS32130 +0.5 3.3 hypothetical protein compare
BPHYT_RS01620 +0.5 3.7 sensor histidine kinase compare
BPHYT_RS23445 +0.5 1.1 hexuronate transporter compare
BPHYT_RS16490 +0.5 3.2 glycerol-3-phosphate dehydrogenase compare
BPHYT_RS30795 +0.5 0.7 short-chain dehydrogenase compare
BPHYT_RS33690 +0.5 0.7 molybdate ABC transporter permease compare
BPHYT_RS05610 +0.5 3.1 DNA-cytosine methyltransferase compare
BPHYT_RS34240 +0.5 1.4 ABC transporter for L-rhamnose/L-fucose/xylitol, permease component (from data) compare
BPHYT_RS30865 +0.5 1.2 sugar ABC transporter ATP-binding protein compare
BPHYT_RS18830 +0.5 3.5 flagellar biosynthesis protein FliQ compare
BPHYT_RS09315 +0.5 0.7 chemotaxis protein CheY compare
BPHYT_RS24740 +0.5 1.5 RNA polymerase subunit sigma-24 compare
BPHYT_RS16065 +0.5 0.7 LacI family transcriptional regulator compare
BPHYT_RS25240 +0.5 1.0 choline-sulfatase compare
BPHYT_RS29605 +0.5 1.7 hypothetical protein compare
BPHYT_RS20155 +0.5 1.1 hypothetical protein compare
BPHYT_RS21870 +0.5 1.0 hypothetical protein compare
BPHYT_RS15775 +0.5 1.2 peptide ABC transporter permease compare
BPHYT_RS33695 +0.5 1.1 molybdenum ABC transporter ATPase compare
BPHYT_RS25250 +0.5 1.6 porin compare
BPHYT_RS11230 +0.5 1.2 hypothetical protein compare
BPHYT_RS29345 +0.5 1.3 lipoyl synthase compare
BPHYT_RS01300 +0.5 1.4 ArsR family transcriptional regulator compare
BPHYT_RS14250 +0.5 2.7 glycosyl transferase compare
BPHYT_RS03015 +0.5 0.6 aldolase compare
BPHYT_RS30140 +0.5 0.8 3-methylitaconate isomerase compare
BPHYT_RS35100 +0.5 1.6 ABC transporter substrate-binding protein compare
BPHYT_RS31760 +0.5 1.4 aryldialkylphosphatase compare
BPHYT_RS31345 +0.5 0.8 malonate transporter compare
BPHYT_RS26515 +0.5 1.3 HAD family hydrolase compare
BPHYT_RS25020 +0.5 1.2 phospholipid-binding protein compare
BPHYT_RS24755 +0.5 1.6 catalase compare
BPHYT_RS29840 +0.5 1.0 polysaccharide biosynthesis protein compare
BPHYT_RS12280 +0.5 1.0 RNA helicase compare
BPHYT_RS09565 +0.5 0.7 acetyl-CoA acetyltransferase compare
BPHYT_RS09040 +0.5 2.2 MerR family transcriptional regulator compare
BPHYT_RS13005 +0.5 1.4 membrane protein compare
BPHYT_RS05800 +0.5 1.6 hypothetical protein compare
BPHYT_RS10360 +0.5 2.0 MFS transporter compare
BPHYT_RS16855 +0.4 2.9 16S rRNA methyltransferase compare
BPHYT_RS34625 +0.4 1.9 hypothetical protein compare
BPHYT_RS07860 +0.4 1.2 benzoate 1,2-dioxygenase subunit beta compare
BPHYT_RS28065 +0.4 0.6 hypothetical protein compare
BPHYT_RS04505 +0.4 1.8 urease accessory protein UreE compare
BPHYT_RS28930 +0.4 0.6 chromosome partitioning protein ParA compare
BPHYT_RS07950 +0.4 2.0 cysteine dioxygenase compare
BPHYT_RS28685 +0.4 1.5 GntR family transcriptional regulator compare
BPHYT_RS02800 +0.4 2.0 5-carboxymethyl-2-hydroxymuconate isomerase compare
BPHYT_RS09580 +0.4 1.4 2-aminoadipate aminotransferase compare
BPHYT_RS32365 +0.4 2.1 branched-chain amino acid ABC transporter substrate-binding protein compare
BPHYT_RS27785 +0.4 1.1 hypothetical protein compare
BPHYT_RS23930 +0.4 0.9 triphosphoribosyl-dephospho-CoA synthase compare
BPHYT_RS36470 +0.4 0.9 hypothetical protein compare
BPHYT_RS23975 +0.4 1.4 peroxidase compare
BPHYT_RS25180 +0.4 1.6 serine hydroxymethyltransferase compare
BPHYT_RS20415 +0.4 2.6 5-dehydro-4-deoxyglucarate dehydratase compare
BPHYT_RS17835 +0.4 2.5 protein tyrosine phosphatase compare
BPHYT_RS08270 +0.4 2.0 long-chain fatty acid--CoA ligase compare
BPHYT_RS24110 +0.4 1.6 hypothetical protein compare
BPHYT_RS02220 +0.4 1.6 butyryl-CoA dehydrogenase compare
BPHYT_RS22985 +0.4 1.7 hypothetical protein compare
BPHYT_RS04985 +0.4 1.3 hypothetical protein compare
BPHYT_RS35560 +0.4 1.3 endoribonuclease L-PSP compare
BPHYT_RS02540 +0.4 1.0 hypothetical protein compare
BPHYT_RS04750 +0.4 1.5 uroporphyrin-III C-methyltransferase compare
BPHYT_RS04425 +0.4 1.5 UDP-phosphate galactose phosphotransferase compare
BPHYT_RS34040 +0.4 2.2 hypothetical protein compare
BPHYT_RS21805 +0.4 1.1 transcriptional regulator compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source L-Histidine in Burkholderia phytofirmans PsJN

For carbon source L-Histidine across organisms