Experiment set1IT018 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Glycerol carbon source

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_64 -7.2 -5.0 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Pf6N2E2_4597 -7.1 -8.4 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3782 -7.0 -4.8 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4825 -6.9 -6.8 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf6N2E2_77 -6.8 -4.7 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_4596 -6.6 -11.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf6N2E2_3253 -6.5 -6.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3839 -6.4 -4.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3783 -6.2 -7.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_71 -6.2 -7.3 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_3630 -6.0 -8.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4826 -6.0 -9.1 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf6N2E2_5176 -6.0 -10.7 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_2526 -5.9 -6.9 Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase compare
Pf6N2E2_5175 -5.7 -17.8 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_4279 -5.4 -16.0 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_3842 -5.4 -6.6 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_3751 -5.3 -17.6 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_5006 -5.3 -10.3 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4047 -5.2 -7.1 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_3252 -5.0 -10.7 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5574 -5.0 -14.5 Glycerol kinase (EC 2.7.1.30) compare
Pf6N2E2_3841 -4.8 -8.0 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3752 -4.7 -21.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_4048 -4.6 -8.7 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_4362 -4.5 -6.2 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_4564 -4.5 -9.5 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf6N2E2_2217 -4.3 -8.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_4278 -4.2 -15.0 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_5575 -4.2 -12.1 Glycerol uptake facilitator protein compare
Pf6N2E2_3610 -4.1 -3.8 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_5177 -4.1 -8.4 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf6N2E2_63 -4.1 -8.2 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf6N2E2_66 -4.0 -9.6 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf6N2E2_5780 -3.8 -13.6 Periplasmic protease compare
Pf6N2E2_3248 -3.8 -6.7 Probable transmembrane protein compare
Pf6N2E2_2073 -3.8 -10.7 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_4759 -3.7 -15.4 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_2074 -3.6 -3.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_3940 -3.6 -11.0 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4638 -3.4 -5.6 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_2899 -3.3 -5.7 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_4277 -3.3 -10.4 LysR family transcriptional regulator PA5437 compare
Pf6N2E2_2753 -3.2 -6.0 HtrA protease/chaperone protein compare
Pf6N2E2_302 -3.2 -8.0 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_5150 -3.1 -7.9 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_5579 -3.1 -7.1 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_4810 -3.0 -8.9 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf6N2E2_2258 -2.9 -11.4 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_2186 -2.8 -6.8 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf6N2E2_1381 -2.8 -10.7 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_5156 -2.8 -4.2 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_50 -2.8 -10.3 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_4077 -2.8 -3.4 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_2756 -2.8 -9.8 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_3170 -2.7 -6.6 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf6N2E2_178 -2.6 -1.9 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_2885 -2.5 -9.2 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_3942 -2.5 -10.6 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_3932 -2.5 -3.3 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_5494 -2.5 -7.0 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_4372 -2.4 -6.0 FIG00460773: hypothetical protein compare
Pf6N2E2_4803 -2.4 -2.6 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_3941 -2.4 -5.0 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_5728 -2.4 -4.2 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_4418 -2.3 -1.4 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_4797 -2.2 -2.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_3349 -2.2 -2.6 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_3062 -2.1 -5.8 Membrane-associated zinc metalloprotease compare
Pf6N2E2_5014 -2.0 -2.0 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3271 -2.0 -2.7 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_3379 -1.9 -11.0 Lactate-responsive regulator LldR in Enterobacteria, GntR family compare
Pf6N2E2_3984 -1.8 -8.6 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_3460 -1.8 -2.3 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_3251 -1.8 -9.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_4009 -1.7 -10.1 GGDEF domain protein compare
Pf6N2E2_1932 -1.7 -6.3 Transcriptional regulator, IclR family compare
Pf6N2E2_1400 -1.7 -10.0 Sensory box histidine kinase/response regulator compare
Pf6N2E2_4764 -1.7 -6.1 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_4276 -1.6 -4.0 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_1402 -1.6 -7.3 hypothetical protein compare
Pf6N2E2_4659 -1.6 -4.9 Lipoprotein, putative compare
Pf6N2E2_4555 -1.6 -7.0 Lysophospholipase (EC 3.1.1.5) conserved
Pf6N2E2_2693 -1.6 -2.2 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_5894 -1.5 -7.0 Putative threonine efflux protein compare
Pf6N2E2_1401 -1.5 -6.6 FIG00955631: hypothetical protein compare
Pf6N2E2_2574 -1.5 -2.1 Flagellar synthesis regulator FleN compare
Pf6N2E2_5219 -1.5 -8.1 FIG140336: TPR domain protein compare
Pf6N2E2_4761 -1.4 -8.0 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_5160 -1.4 -1.8 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_5255 -1.4 -8.2 Outer membrane stress sensor protease DegS compare
Pf6N2E2_4763 -1.3 -7.6 Biotin synthesis protein BioC compare
Pf6N2E2_2514 -1.3 -4.3 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_2465 -1.3 -2.9 Cys regulon transcriptional activator CysB compare
Pf6N2E2_4658 -1.3 -3.8 FIG00955006: hypothetical protein compare
Pf6N2E2_3257 -1.2 -3.4 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_4206 -1.2 -1.4 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_4762 -1.2 -3.4 Biotin synthesis protein BioH compare
Pf6N2E2_5841 -1.2 -1.5 GlcG protein compare
Pf6N2E2_4071 -1.2 -3.2 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_5316 -1.2 -1.4 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_5666 -1.1 -6.4 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_3847 -1.1 -3.9 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_3869 -1.1 -6.5 Branched-chain amino acid transport protein AzlC compare
Pf6N2E2_5001 -1.1 -1.6 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_5899 -1.1 -6.0 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_4631 -1.1 -5.9 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_248 -1.1 -5.1 hypothetical protein compare
Pf6N2E2_3833 -1.1 -4.2 hypothetical protein compare
Pf6N2E2_4205 -1.1 -3.7 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_2588 -1.1 -2.9 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_5676 -1.1 -3.1 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_5505 -1.0 -2.6 hypothetical protein compare
Pf6N2E2_4984 -1.0 -3.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4204 -1.0 -1.6 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_2752 -1.0 -5.2 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_282 -1.0 -1.5 GNAT family acetyltransferase YjcF compare
Pf6N2E2_5553 -1.0 -4.4 Quinolinate synthetase (EC 2.5.1.72) compare
Pf6N2E2_2065 -1.0 -2.4 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf6N2E2_3885 -1.0 -2.9 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_4416 -1.0 -1.9 Tyrosine recombinase XerC compare
Pf6N2E2_288 -1.0 -1.5 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_552 -1.0 -2.8 Uncharacterized protein ImpF compare
Pf6N2E2_613 -1.0 -1.6 lipoprotein, putative compare
Pf6N2E2_3346 -1.0 -4.6 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf6N2E2_5527 -1.0 -2.0 Cold shock protein CspC compare
Pf6N2E2_504 -1.0 -2.9 DNA-binding response regulator compare
Pf6N2E2_3835 -0.9 -3.4 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_70 -0.9 -2.7 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_146 -0.9 -2.1 Transcriptional regulator, MarR family compare
Pf6N2E2_3461 -0.9 -1.2 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_1611 -0.9 -2.8 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf6N2E2_3260 -0.9 -3.0 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_2371 -0.9 -1.8 Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) compare
Pf6N2E2_5252 -0.9 -2.0 FIG00956396: hypothetical protein compare
Pf6N2E2_6140 -0.9 -1.0 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_1211 -0.9 -1.3 Lactoylglutathione lyase compare
Pf6N2E2_5049 -0.9 -1.9 acetyltransferase, GNAT family compare
Pf6N2E2_374 -0.9 -2.2 FIG00953249: hypothetical protein compare
Pf6N2E2_2488 -0.9 -1.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5761 -0.9 -1.6 Transcriptional regulator, TetR family compare
Pf6N2E2_4478 -0.8 -4.2 FIG019278: hypothetical protein compare
Pf6N2E2_2277 -0.8 -1.4 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_1778 -0.8 -2.9 Positive regulator of CheA protein activity (CheW) compare
Pf6N2E2_2261 -0.8 -4.1 VacJ-like lipoprotein precursor compare
Pf6N2E2_3748 -0.8 -3.4 Cytochrome B561 compare
Pf6N2E2_99 -0.8 -3.3 hypothetical protein compare
Pf6N2E2_2166 -0.8 -5.6 protein of unknown function DUF6, transmembrane compare
Pf6N2E2_180 -0.8 -2.7 Transcriptional regulator, MerR family compare
Pf6N2E2_4824 -0.8 -2.2 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf6N2E2_5448 -0.8 -3.3 hypothetical protein compare
Pf6N2E2_3017 -0.8 -2.9 hypothetical protein compare
Pf6N2E2_2827 -0.8 -1.2 hypothetical protein compare
Pf6N2E2_5727 -0.8 -3.8 FIG00955360: hypothetical protein compare
Pf6N2E2_5993 -0.8 -1.2 FIG00957412: hypothetical protein compare
Pf6N2E2_623 -0.8 -1.1 FIG00954674: hypothetical protein compare
Pf6N2E2_2674 -0.8 -1.0 FIG00953856: hypothetical protein compare
Pf6N2E2_2880 -0.8 -2.3 FIG00959696: hypothetical protein compare
Pf6N2E2_338 -0.8 -1.6 Transcriptional regulator, AraC family compare
Pf6N2E2_4417 -0.8 -3.0 Protein of unknown function DUF484 compare
Pf6N2E2_2111 -0.8 -2.3 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit A (from data) compare
Pf6N2E2_2487 -0.8 -1.0 FIG00956090: hypothetical protein compare
Pf6N2E2_3077 -0.8 -2.7 FIG138056: a glutathione-dependent thiol reductase compare
Pf6N2E2_622 -0.8 -3.5 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_3761 -0.8 -6.8 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_1339 -0.8 -1.6 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_3264 -0.8 -2.1 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_5128 -0.8 -2.6 COG1496: Uncharacterized conserved protein compare
Pf6N2E2_1652 -0.8 -1.9 Transcriptional regulator, TetR family compare
Pf6N2E2_6164 -0.7 -1.0 tRNA-Val-TAC compare
Pf6N2E2_2852 -0.7 -5.1 GGDEF domain/EAL domain protein compare
Pf6N2E2_3258 -0.7 -3.5 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_2758 -0.7 -5.2 L-aspartate oxidase (EC 1.4.3.16) compare
Pf6N2E2_6029 -0.7 -1.6 hypothetical protein compare
Pf6N2E2_3027 -0.7 -1.2 Baseplate assembly protein V compare
Pf6N2E2_3938 -0.7 -5.2 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf6N2E2_5181 -0.7 -5.2 Paraquat-inducible protein A compare
Pf6N2E2_3868 -0.7 -3.7 Transcriptional regulator, LysR family compare
Pf6N2E2_3277 -0.7 -2.1 FagA protein compare
Pf6N2E2_5185 -0.7 -4.4 FIG00961017: hypothetical protein compare
Pf6N2E2_2218 -0.7 -2.6 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_3033 -0.7 -1.2 hypothetical protein compare
Pf6N2E2_4391 -0.7 -3.8 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf6N2E2_5183 -0.7 -5.3 Paraquat-inducible protein B compare
Pf6N2E2_4067 -0.7 -4.3 Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) compare
Pf6N2E2_1156 -0.7 -1.6 hypothetical protein compare
Pf6N2E2_6059 -0.7 -2.1 FIG008443: hypothetical protein compare
Pf6N2E2_2205 -0.7 -2.9 FIG033889: YebC paralog in Betaproteobacteria compare
Pf6N2E2_768 -0.7 -2.2 Fap amyloid fibril minor component compare
Pf6N2E2_5182 -0.7 -3.7 Paraquat-inducible protein A compare
Pf6N2E2_5025 -0.7 -6.0 Sensor histidine kinase compare
Pf6N2E2_2018 -0.7 -1.9 hypothetical protein compare
Pf6N2E2_3037 -0.7 -4.4 RNA polymerase sigma factor RpoS compare
Pf6N2E2_1131 -0.7 -3.1 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf6N2E2_3191 -0.7 -2.5 Serine acetyltransferase (EC 2.3.1.30) compare
Pf6N2E2_5341 -0.7 -2.3 Stringent starvation protein B compare
Pf6N2E2_2549 -0.7 -1.5 hypothetical protein compare
Pf6N2E2_2912 -0.7 -0.8 FIG00954094: hypothetical protein compare
Pf6N2E2_3088 -0.6 -0.8 hypothetical protein compare
Pf6N2E2_5103 -0.6 -0.8 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Glycerol in Pseudomonas fluorescens FW300-N2E2

For carbon source Glycerol across organisms