Experiment set1IT018 for Pseudomonas fluorescens FW300-N2E2

Compare to:

Glycerol carbon source

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_4153 +3.3 7.4 Sensory box histidine kinase compare
Pf6N2E2_1981 +2.0 6.2 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_3656 +1.9 11.7 Probable transcription regulator Mig-14 compare
Pf6N2E2_2447 +1.7 11.8 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_2219 +1.6 5.2 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_3655 +1.6 13.7 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_4365 +1.6 10.6 Ribonuclease PH (EC 2.7.7.56) compare
Pf6N2E2_682 +1.5 5.9 Predicted regulator PutR for proline utilization, GntR family compare
Pf6N2E2_3665 +1.5 2.6 serine/threonine protein kinase compare
Pf6N2E2_3612 +1.5 5.4 HflK protein compare
Pf6N2E2_828 +1.4 5.3 Transcriptional regulator, TetR family compare
Pf6N2E2_3283 +1.4 9.9 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf6N2E2_5705 +1.3 3.5 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_1626 +1.3 6.6 Putative ATP-binding component of a transport system compare
Pf6N2E2_2384 +1.2 6.9 CmpX compare
Pf6N2E2_2281 +1.2 4.5 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_2286 +1.2 2.7 FIG00953287: hypothetical protein compare
Pf6N2E2_4187 +1.2 3.7 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2755 +1.1 2.2 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_2580 +1.1 3.7 Flagellar biosynthesis protein FliP compare
Pf6N2E2_5178 +1.1 2.9 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_2582 +1.1 4.7 Flagellar motor switch protein FliN compare
Pf6N2E2_3663 +1.0 7.0 Glycosyl transferase compare
Pf6N2E2_5554 +1.0 3.8 FIG023103: Predicted transmembrane protein compare
Pf6N2E2_3659 +1.0 5.5 Protein fixF compare
Pf6N2E2_5534 +1.0 6.0 FIG000859: hypothetical protein YebC compare
Pf6N2E2_2189 +1.0 5.4 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_3667 +1.0 1.6 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_1391 +1.0 3.2 DNA-binding response regulator, LuxR family compare
Pf6N2E2_4159 +1.0 4.2 Cytochrome c4 compare
Pf6N2E2_2605 +0.9 4.9 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_5694 +0.9 6.6 Flagellar basal-body rod protein FlgB compare
Pf6N2E2_1398 +0.9 3.7 Rhodanese-related sulfurtransferase compare
Pf6N2E2_3786 +0.9 3.1 Twin-arginine translocation protein TatC compare
Pf6N2E2_5508 +0.9 2.5 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_4451 +0.9 5.2 FIG139438: lipoprotein B compare
Pf6N2E2_1056 +0.9 0.8 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_3908 +0.9 4.8 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_1389 +0.9 7.0 Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) compare
Pf6N2E2_2578 +0.9 1.7 Flagellar biosynthesis protein FliR compare
Pf6N2E2_2583 +0.9 5.1 Flagellar motor switch protein FliM compare
Pf6N2E2_1147 +0.9 2.9 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_525 +0.9 4.2 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_2706 +0.9 3.8 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_4369 +0.9 2.8 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_2591 +0.8 3.6 Flagellar assembly protein FliH compare
Pf6N2E2_1171 +0.8 3.0 LysR family transcriptional regulator PA2877 compare
Pf6N2E2_5679 +0.8 4.4 hypothetical protein compare
Pf6N2E2_5695 +0.8 6.2 Flagellar basal-body rod protein FlgC compare
Pf6N2E2_6075 +0.8 3.8 Chromosome segregation ATPases compare
Pf6N2E2_2590 +0.8 6.0 Flagellum-specific ATP synthase FliI compare
Pf6N2E2_5555 +0.8 1.4 Cold shock protein CspA compare
Pf6N2E2_2788 +0.8 2.5 Transcriptional regulator, AsnC family compare
Pf6N2E2_2279 +0.8 4.3 FIG00954981: hypothetical protein compare
Pf6N2E2_600 +0.8 3.1 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_5677 +0.8 1.4 Carbon storage regulator compare
Pf6N2E2_2577 +0.8 5.4 Flagellar biosynthesis protein FlhB compare
Pf6N2E2_3791 +0.8 6.2 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_1395 +0.8 4.8 Uncharacterized conserved protein compare
Pf6N2E2_1379 +0.8 4.4 Sensory box histidine kinase/response regulator compare
Pf6N2E2_2594 +0.8 5.3 Flagellar hook-basal body complex protein FliE compare
Pf6N2E2_127 +0.8 1.7 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_1312 +0.8 2.1 4-hydroxyphenylacetate symporter, major facilitator superfamily (MFS) compare
Pf6N2E2_3560 +0.8 3.3 membrane protein, putative compare
Pf6N2E2_3969 +0.8 1.7 Membrane-fusion protein compare
Pf6N2E2_5697 +0.8 6.6 Flagellar hook protein FlgE compare
Pf6N2E2_2825 +0.8 3.4 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_2602 +0.8 5.0 Flagellin protein FlaA compare
Pf6N2E2_1774 +0.8 1.5 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_3763 +0.7 2.0 hypothetical protein compare
Pf6N2E2_5052 +0.7 2.1 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
Pf6N2E2_3664 +0.7 4.8 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_2278 +0.7 6.3 Transcription-repair coupling factor compare
Pf6N2E2_1441 +0.7 2.1 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_2576 +0.7 5.8 Flagellar biosynthesis protein FlhA compare
Pf6N2E2_1393 +0.7 4.0 hypothetical protein compare
Pf6N2E2_529 +0.7 4.3 FIG00954439: hypothetical protein compare
Pf6N2E2_2754 +0.7 1.7 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf6N2E2_2585 +0.7 5.4 Flagellar hook-length control protein FliK compare
Pf6N2E2_5691 +0.7 5.5 Flagellar basal-body P-ring formation protein FlgA compare
Pf6N2E2_3270 +0.7 3.7 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_1387 +0.7 3.0 Cytochrome C550 (Soluble cytochrome C) compare
Pf6N2E2_69 +0.7 4.9 Probable type IV pilus assembly FimV-related transmembrane protein compare
Pf6N2E2_1806 +0.7 2.1 hypothetical protein compare
Pf6N2E2_6058 +0.7 3.1 FIG139976: hypothetical protein compare
Pf6N2E2_1984 +0.7 2.0 probable exported protein STY4558 compare
Pf6N2E2_2627 +0.7 4.4 Flagellar basal-body rod protein FlgG compare
Pf6N2E2_5337 +0.7 3.6 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_4057 +0.7 1.0 lipoprotein, putative compare
Pf6N2E2_2589 +0.7 4.5 Flagellar protein FliJ compare
Pf6N2E2_2702 +0.7 2.4 FIG00962464: hypothetical protein compare
Pf6N2E2_693 +0.7 1.3 hypothetical protein compare
Pf6N2E2_3658 +0.7 4.4 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_2552 +0.7 4.1 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_4148 +0.7 4.6 Glutamate-aspartate carrier protein compare
Pf6N2E2_4776 +0.7 5.4 Coenzyme PQQ synthesis protein F compare
Pf6N2E2_2864 +0.7 1.7 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_3386 +0.7 3.5 hypothetical protein compare
Pf6N2E2_2707 +0.7 3.0 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_829 +0.7 2.7 TesB-like acyl-CoA thioesterase 1 compare
Pf6N2E2_4889 +0.7 4.5 Putative transport protein compare
Pf6N2E2_5551 +0.7 4.5 Copper resistance protein B compare
Pf6N2E2_2823 +0.7 2.2 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_405 +0.7 1.6 hypothetical protein compare
Pf6N2E2_2003 +0.7 2.0 hypothetical protein compare
Pf6N2E2_2967 +0.7 1.6 Cold shock protein CspA compare
Pf6N2E2_5157 +0.7 4.1 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
Pf6N2E2_5262 +0.7 2.8 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf6N2E2_3157 +0.7 3.8 tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase compare
Pf6N2E2_2314 +0.7 2.6 VapB protein (antitoxin to VapC) compare
Pf6N2E2_2971 +0.7 5.8 AmpG permease compare
Pf6N2E2_3323 +0.7 2.6 hypothetical protein compare
Pf6N2E2_1382 +0.7 4.5 Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) compare
Pf6N2E2_1983 +0.7 1.1 hypothetical protein compare
Pf6N2E2_2623 +0.6 5.3 Flagellar hook-associated protein FlgK compare
Pf6N2E2_1014 +0.6 1.1 Nitrate/nitrite transporter compare
Pf6N2E2_5906 +0.6 2.5 Flp pilus assembly protein, pilin Flp compare
Pf6N2E2_2572 +0.6 1.5 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_629 +0.6 1.9 2-ketogluconate kinase (EC 2.7.1.13) compare
Pf6N2E2_4486 +0.6 3.7 Glycine cleavage system H protein compare
Pf6N2E2_1195 +0.6 2.0 hypothetical protein compare
Pf6N2E2_1596 +0.6 0.9 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_3293 +0.6 1.1 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) compare
Pf6N2E2_2176 +0.6 1.0 Amidases related to nicotinamidase compare
Pf6N2E2_2599 +0.6 3.4 Flagellar biosynthesis protein FliS compare
Pf6N2E2_5158 +0.6 2.9 FIG00954153: hypothetical protein compare
Pf6N2E2_4063 +0.6 2.6 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
Pf6N2E2_5499 +0.6 1.1 hypothetical protein compare
Pf6N2E2_2646 +0.6 1.7 FIG00953416: hypothetical protein compare
Pf6N2E2_3344 +0.6 2.3 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD compare
Pf6N2E2_2080 +0.6 1.2 hypothetical protein compare
Pf6N2E2_3521 +0.6 4.6 Sensor histidine kinase/response regulator compare
Pf6N2E2_2509 +0.6 2.1 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_2579 +0.6 3.3 Flagellar biosynthesis protein FliQ compare
Pf6N2E2_3607 +0.6 4.1 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_692 +0.6 2.7 Glucarate dehydratase (EC 4.2.1.40) compare
Pf6N2E2_367 +0.6 1.6 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_2716 +0.6 1.7 FIG00954793: hypothetical protein compare
Pf6N2E2_694 +0.6 3.6 Outer membrane protein (porin) compare
Pf6N2E2_473 +0.6 2.4 putative cytochrome p450 oxidoreductase compare
Pf6N2E2_3014 +0.6 1.8 P2-like prophage tail protein X compare
Pf6N2E2_2606 +0.6 3.4 hypothetical protein compare
Pf6N2E2_2592 +0.6 2.5 Flagellar motor switch protein FliG compare
Pf6N2E2_2223 +0.6 2.2 hypothetical protein compare
Pf6N2E2_4432 +0.6 3.6 Uroporphyrinogen-III synthase (EC 4.2.1.75) compare
Pf6N2E2_3611 +0.6 1.4 HflC protein compare
Pf6N2E2_4097 +0.6 4.8 FIG00953365: hypothetical protein compare
Pf6N2E2_1399 +0.6 1.8 Transcriptional regulator, LuxR family compare
Pf6N2E2_2428 +0.6 1.8 Thiol-disulfide isomerase and thioredoxins compare
Pf6N2E2_4980 +0.6 3.4 hypothetical protein compare
Pf6N2E2_1141 +0.6 1.7 Lipid-A-disaccharide synthase (EC 2.4.1.182) compare
Pf6N2E2_2624 +0.6 3.4 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) compare
Pf6N2E2_1636 +0.6 3.9 Ferrichrome-iron receptor compare
Pf6N2E2_2622 +0.6 4.4 Flagellar hook-associated protein FlgL compare
Pf6N2E2_4364 +0.6 1.2 Protein YicC compare
Pf6N2E2_2013 +0.6 1.0 hypothetical protein compare
Pf6N2E2_1037 +0.6 2.9 hypothetical protein compare
Pf6N2E2_5840 +0.6 1.7 hypothetical protein compare
Pf6N2E2_1124 +0.6 1.7 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_5979 +0.6 3.7 D-galactonate regulator, IclR family compare
Pf6N2E2_2316 +0.6 4.3 Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation compare
Pf6N2E2_2699 +0.6 3.4 Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO compare
Pf6N2E2_2984 +0.6 1.0 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_4917 +0.6 2.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_500 +0.6 2.2 Beta-ureidopropionase (EC 3.5.1.6) compare
Pf6N2E2_4614 +0.6 2.0 twitching motility protein PilH compare
Pf6N2E2_919 +0.6 1.0 FIG00954373: hypothetical protein compare
Pf6N2E2_5312 +0.6 1.6 FIG00964214: hypothetical protein compare
Pf6N2E2_3792 +0.5 3.6 Glucans biosynthesis protein G precursor compare
Pf6N2E2_2193 +0.5 3.6 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) compare
Pf6N2E2_5338 +0.5 3.5 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_754 +0.5 1.3 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_3981 +0.5 4.9 T1SS secreted agglutinin RTX compare
Pf6N2E2_4895 +0.5 2.5 Isochorismatase (EC 3.3.2.1) compare
Pf6N2E2_5669 +0.5 2.6 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf6N2E2_1488 +0.5 2.7 hypothetical protein compare
Pf6N2E2_5188 +0.5 2.1 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2479 +0.5 2.4 Transcription elongation factor GreB compare
Pf6N2E2_5339 +0.5 3.4 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_945 +0.5 1.7 Transcriptional regulator, TetR family compare
Pf6N2E2_5077 +0.5 2.7 hypothetical protein compare
Pf6N2E2_2456 +0.5 2.4 Transcriptional regulator, LysR family compare
Pf6N2E2_424 +0.5 3.1 Decarboxylase family protein compare
Pf6N2E2_5552 +0.5 4.7 Multicopper oxidase compare
Pf6N2E2_4838 +0.5 4.1 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) compare
Pf6N2E2_2625 +0.5 2.6 Flagellar P-ring protein FlgI compare
Pf6N2E2_3072 +0.5 3.9 [Protein-PII] uridylyltransferase (EC 2.7.7.59) compare
Pf6N2E2_4809 +0.5 4.6 COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases compare
Pf6N2E2_1896 +0.5 1.3 hypothetical protein compare
Pf6N2E2_446 +0.5 3.6 Glutathione reductase (EC 1.8.1.7) compare
Pf6N2E2_2597 +0.5 3.7 Flagellar regulatory protein FleQ compare
Pf6N2E2_923 +0.5 1.6 Haloacid dehalogenase, type II (EC 3.8.1.2) compare
Pf6N2E2_292 +0.5 3.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf6N2E2_1092 +0.5 1.5 Probable vanillate O-demethylase oxygenase subunit oxidoreductase protein (EC 1.14.13.-) compare
Pf6N2E2_1660 +0.5 2.1 RND efflux system, membrane fusion protein CmeA compare
Pf6N2E2_1386 +0.5 2.6 amino acid ABC transporter, periplasmic substrate-binding protein compare
Pf6N2E2_2455 +0.5 3.2 FIG00953957: hypothetical protein compare
Pf6N2E2_5696 +0.5 2.7 Flagellar basal-body rod modification protein FlgD compare
Pf6N2E2_1499 +0.5 1.5 ABC transporter amino acid-binding protein compare
Pf6N2E2_2413 +0.5 1.5 FIG074102: hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Glycerol in Pseudomonas fluorescens FW300-N2E2

For carbon source Glycerol across organisms