Experiment set1IT018 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A with Zinc sulfate heptahydrate 0.2 mM

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS23525 +7.4 57.0 hypothetical protein compare
CA265_RS22690 +5.6 30.0 hypothetical protein compare
CA265_RS21060 +4.4 11.5 hypothetical protein compare
CA265_RS23505 +4.4 8.8 biopolymer transporter ExbD compare
CA265_RS00490 +4.0 1.8 hypothetical protein compare
CA265_RS23145 +3.9 9.4 hypothetical protein compare
CA265_RS19030 +3.8 21.0 hypothetical protein compare
CA265_RS19940 +3.6 22.1 hypothetical protein compare
CA265_RS18135 +3.5 9.3 uroporphyrinogen-III synthase compare
CA265_RS15615 +3.2 14.0 malate dehydrogenase compare
CA265_RS16005 +3.1 8.6 hypothetical protein compare
CA265_RS09435 +3.0 23.5 hypothetical protein compare
CA265_RS07515 +3.0 17.6 pyridoxal phosphate-dependent aminotransferase compare
CA265_RS21900 +3.0 23.3 two-component sensor histidine kinase compare
CA265_RS12745 +2.9 10.4 NUDIX hydrolase compare
CA265_RS19945 +2.9 6.3 hypothetical protein compare
CA265_RS05160 +2.9 24.2 hypothetical protein compare
CA265_RS12890 +2.8 18.6 hypothetical protein compare
CA265_RS03260 +2.8 16.1 multidrug ABC transporter ATP-binding protein compare
CA265_RS19740 +2.8 13.8 gliding motility lipoprotein GldD compare
CA265_RS08855 +2.7 18.3 MFS transporter compare
CA265_RS03295 +2.6 20.6 gliding motility-associated ABC transporter substrate-binding protein GldG compare
CA265_RS15085 +2.6 14.7 hypothetical protein compare
CA265_RS18115 +2.6 18.3 gliding motility protein GldN compare
CA265_RS23635 +2.6 21.4 gliding motility lipoprotein GldJ compare
CA265_RS23510 +2.6 6.8 energy transducer TonB compare
CA265_RS18990 +2.6 23.8 cell surface protein SprA compare
CA265_RS03290 +2.6 16.9 gliding motility-associated ABC transporter permease subunit GldF compare
CA265_RS18130 +2.5 20.7 gliding motility-associated lipoprotein compare
CA265_RS23640 +2.5 20.1 hypothetical protein compare
CA265_RS18120 +2.5 19.6 gliding motility protein GldM compare
CA265_RS17455 +2.4 9.3 hypothetical protein compare
CA265_RS20350 +2.4 9.4 gliding motility lipoprotein GldH compare
CA265_RS17555 +2.4 16.7 hypothetical protein compare
CA265_RS18125 +2.4 10.6 gliding motility protein GldL compare
CA265_RS18225 +2.4 12.8 DNA-binding response regulator compare
CA265_RS15200 +2.4 5.6 hypothetical protein compare
CA265_RS12945 +2.3 15.7 hypothetical protein compare
CA265_RS24650 +2.2 12.8 beta-phosphoglucomutase compare
CA265_RS15070 +2.2 7.8 hypothetical protein compare
CA265_RS14765 +2.2 18.0 alkaline phosphatase family protein compare
CA265_RS15115 +2.2 14.4 porin compare
CA265_RS22800 +2.2 14.8 glycosyl transferase compare
CA265_RS15215 +2.1 15.7 two-component sensor histidine kinase compare
CA265_RS18550 +2.0 4.0 N-acetyltransferase compare
CA265_RS01975 +2.0 6.7 cell division protein compare
CA265_RS23840 +2.0 11.2 S1/P1 Nuclease compare
CA265_RS14750 +2.0 8.6 energy transducer TonB compare
CA265_RS23985 +2.0 10.5 gliding motility lipoprotein GldB compare
CA265_RS04990 +2.0 7.8 short chain dehydrogenase compare
CA265_RS24655 +1.9 12.5 maltose phosphorylase (EC 2.4.1.8) (from data) compare
CA265_RS24790 +1.9 14.0 peptidylprolyl isomerase compare
CA265_RS15210 +1.9 8.4 DNA-binding response regulator compare
CA265_RS06585 +1.9 8.7 hypothetical protein compare
CA265_RS18770 +1.8 4.9 hypothetical protein compare
CA265_RS15195 +1.7 7.4 hypothetical protein compare
CA265_RS02605 +1.7 6.7 hypothetical protein compare
CA265_RS15005 +1.7 12.2 porin compare
CA265_RS22805 +1.7 8.4 glycosyl transferase compare
CA265_RS14670 +1.7 9.5 hypothetical protein compare
CA265_RS14825 +1.7 3.5 outer membrane protein assembly factor BamD compare
CA265_RS14740 +1.6 8.9 biopolymer transporter ExbB compare
CA265_RS18530 +1.6 4.8 aspartate aminotransferase family protein compare
CA265_RS10470 +1.5 10.5 amidinotransferase compare
CA265_RS14665 +1.5 9.6 hypothetical protein compare
CA265_RS06875 +1.5 11.0 hydrophobe/amphiphile efflux-1 family RND transporter compare
CA265_RS14745 +1.5 3.8 biopolymer transporter ExbD compare
CA265_RS13485 +1.5 2.6 hypothetical protein compare
CA265_RS00270 +1.5 1.6 hypothetical protein compare
CA265_RS00655 +1.4 7.3 RNA polymerase subunit sigma-24 compare
CA265_RS06870 +1.4 11.4 efflux transporter periplasmic adaptor subunit compare
CA265_RS09455 +1.4 11.4 FUSC family protein compare
CA265_RS17560 +1.4 6.7 peptidylprolyl isomerase compare
CA265_RS18230 +1.4 5.1 two-component sensor histidine kinase compare
CA265_RS01200 +1.4 5.4 hypothetical protein compare
CA265_RS08445 +1.4 2.0 endonuclease compare
CA265_RS06250 +1.4 3.1 RNA polymerase subunit sigma-70 compare
CA265_RS10475 +1.4 8.6 amidinotransferase compare
CA265_RS23615 +1.3 9.9 hemolysin compare
CA265_RS18540 +1.3 4.1 N-succinylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
CA265_RS06880 +1.3 7.9 RND transporter compare
CA265_RS23090 +1.3 4.1 transcriptional regulator compare
CA265_RS23210 +1.3 8.4 hypothetical protein compare
CA265_RS12665 +1.3 2.1 cold-shock protein compare
CA265_RS14535 +1.3 4.0 DUF4783 domain-containing protein compare
CA265_RS00855 +1.3 6.5 hypothetical protein compare
CA265_RS09335 +1.2 5.6 DUF4442 domain-containing protein compare
CA265_RS00025 +1.2 3.5 hypothetical protein compare
CA265_RS21905 +1.2 5.1 hypothetical protein compare
CA265_RS18495 +1.2 1.7 hypothetical protein compare
CA265_RS09650 +1.2 3.7 diaminopimelate decarboxylase compare
CA265_RS15290 +1.2 7.1 hypothetical protein compare
CA265_RS21865 +1.2 7.1 two-component sensor histidine kinase compare
CA265_RS05165 +1.2 5.5 hypothetical protein compare
CA265_RS15580 +1.1 6.4 tRNA pseudouridine(38-40) synthase TruA compare
CA265_RS21290 +1.1 2.6 hypothetical protein compare
CA265_RS15640 +1.1 5.2 sugar kinase compare
CA265_RS23980 +1.1 6.5 patatin compare
CA265_RS20375 +1.1 4.7 methyltransferase compare
CA265_RS15230 +1.1 4.6 RNA pseudouridine synthase compare
CA265_RS02580 +1.1 3.6 hypothetical protein compare
CA265_RS25365 +1.0 3.4 glycerol acyltransferase compare
CA265_RS18485 +1.0 4.8 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
CA265_RS13695 +1.0 4.4 hypothetical protein compare
CA265_RS16225 +1.0 1.5 hypothetical protein compare
CA265_RS05395 +1.0 2.1 heme oxygenase compare
CA265_RS10195 +1.0 3.3 hypothetical protein compare
CA265_RS21470 +1.0 4.1 elongation factor P compare
CA265_RS02840 +1.0 3.7 30S ribosomal protein S30 compare
CA265_RS23355 +1.0 3.7 hypothetical protein compare
CA265_RS18500 +1.0 4.3 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) compare
CA265_RS03595 +1.0 3.1 hydrolase compare
CA265_RS09035 +1.0 3.5 anti-anti-sigma factor compare
CA265_RS23845 +1.0 3.4 fumarate hydratase compare
CA265_RS04980 +1.0 2.2 recombination protein RecR compare
CA265_RS18090 +1.0 7.1 gliding motility protein compare
CA265_RS17440 +1.0 7.1 Fis family transcriptional regulator compare
CA265_RS21850 +1.0 4.2 hypothetical protein compare
CA265_RS23100 +1.0 3.9 hypothetical protein compare
CA265_RS02795 +1.0 2.0 hypothetical protein compare
CA265_RS01205 +1.0 2.9 import component protein compare
CA265_RS16515 +1.0 1.5 hypothetical protein compare
CA265_RS18445 +1.0 4.6 WYL domain-containing protein compare
CA265_RS08085 +0.9 6.5 aminodeoxychorismate lyase compare
CA265_RS12775 +0.9 6.7 ATP-dependent chaperone ClpB compare
CA265_RS21000 +0.9 3.4 ribosome silencing factor compare
CA265_RS25215 +0.9 3.4 MBL fold hydrolase compare
CA265_RS05720 +0.9 4.5 hypothetical protein compare
CA265_RS12715 +0.9 4.1 hypothetical protein compare
CA265_RS23800 +0.9 4.3 methyltransferase type 12 compare
CA265_RS11670 +0.9 4.4 hypothetical protein compare
CA265_RS21830 +0.9 3.4 hypothetical protein compare
CA265_RS10750 +0.9 4.7 SMC-Scp complex subunit ScpB compare
CA265_RS24255 +0.9 2.9 sugar kinase compare
CA265_RS24980 +0.9 2.0 hypothetical protein compare
CA265_RS21580 +0.9 2.0 QacE family quaternary ammonium compound efflux SMR transporter compare
CA265_RS11115 +0.9 6.2 polyphosphate kinase 1 compare
CA265_RS17025 +0.9 1.5 hypothetical protein compare
CA265_RS08070 +0.9 1.3 tRNA-Ser compare
CA265_RS04650 +0.9 4.5 two-component sensor histidine kinase compare
CA265_RS18240 +0.9 3.6 hypothetical protein compare
CA265_RS05185 +0.9 3.5 hypothetical protein compare
CA265_RS06315 +0.9 4.6 uridine kinase compare
CA265_RS05595 +0.9 3.3 TetR family transcriptional regulator compare
CA265_RS01195 +0.8 2.4 hypothetical protein compare
CA265_RS24230 +0.8 5.6 RNA polymerase sigma factor compare
CA265_RS11100 +0.8 6.8 hypothetical protein compare
CA265_RS23620 +0.8 3.6 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
CA265_RS24605 +0.8 0.8 hypothetical protein compare
CA265_RS21295 +0.8 1.9 hypothetical protein compare
CA265_RS00335 +0.8 2.1 hypothetical protein compare
CA265_RS06200 +0.8 4.2 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB compare
CA265_RS03050 +0.8 3.0 hypothetical protein compare
CA265_RS04360 +0.8 5.8 hypothetical protein compare
CA265_RS06365 +0.8 5.7 hypothetical protein compare
CA265_RS21690 +0.8 3.2 hypothetical protein compare
CA265_RS21255 +0.8 4.0 hypothetical protein compare
CA265_RS25330 +0.8 1.7 DoxX family protein compare
CA265_RS07390 +0.8 2.4 hypothetical protein compare
CA265_RS02945 +0.8 1.8 hypothetical protein compare
CA265_RS03180 +0.8 2.1 hypothetical protein compare
CA265_RS11455 +0.8 4.1 hypothetical protein compare
CA265_RS19810 +0.7 1.1 hypothetical protein compare
CA265_RS16595 +0.7 3.4 hypothetical protein compare
CA265_RS20620 +0.7 2.8 hypothetical protein compare
CA265_RS15270 +0.7 3.7 hypothetical protein compare
CA265_RS23895 +0.7 1.7 preprotein translocase compare
CA265_RS20640 +0.7 1.8 hypothetical protein compare
CA265_RS23675 +0.7 0.8 hypothetical protein compare
CA265_RS12915 +0.7 4.5 thioredoxin domain-containing protein compare
CA265_RS10040 +0.7 1.1 hypothetical protein compare
CA265_RS23520 +0.7 3.1 phosphate ABC transporter substrate-binding protein compare
CA265_RS12075 +0.7 1.9 hypothetical protein compare
CA265_RS09000 +0.7 2.1 hypothetical protein compare
CA265_RS08195 +0.7 3.1 hypothetical protein compare
CA265_RS22320 +0.7 3.3 hypothetical protein compare
CA265_RS11855 +0.7 1.6 hypothetical protein compare
CA265_RS19465 +0.7 2.7 protein tyrosine phosphatase compare
CA265_RS03330 +0.7 2.0 hypothetical protein compare
CA265_RS24395 +0.7 2.9 XRE family transcriptional regulator compare
CA265_RS23460 +0.7 1.3 hypothetical protein compare
CA265_RS25450 +0.7 1.3 iron-sulfur cluster assembly accessory protein compare
CA265_RS09725 +0.7 5.4 tolB protein precursor compare
CA265_RS08880 +0.7 3.5 chromate transporter compare
CA265_RS12100 +0.7 3.2 hypothetical protein compare
CA265_RS06930 +0.7 1.9 hypothetical protein compare
CA265_RS05665 +0.7 3.1 LLM class flavin-dependent oxidoreductase compare
CA265_RS22285 +0.7 2.7 LysR family transcriptional regulator compare
CA265_RS21620 +0.7 3.5 hybrid sensor histidine kinase/response regulator compare
CA265_RS05620 +0.7 1.0 hypothetical protein compare
CA265_RS13645 +0.7 3.2 hypothetical protein compare
CA265_RS03255 +0.7 3.0 glycerophosphodiester phosphodiesterase compare
CA265_RS24305 +0.7 2.6 hypothetical protein compare
CA265_RS11635 +0.7 2.9 chorismate mutase (EC 5.4.99.5); 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) (from data) compare
CA265_RS23515 +0.6 2.3 hypothetical protein compare
CA265_RS20975 +0.6 1.7 hypothetical protein compare
CA265_RS15335 +0.6 3.4 NAD-dependent epimerase compare
CA265_RS16370 +0.6 2.6 hypothetical protein compare
CA265_RS05460 +0.6 4.0 glycosyl transferase family 2 compare
CA265_RS17785 +0.6 1.9 hypothetical protein compare


Specific Phenotypes

For 20 genes in this experiment

For stress Zinc sulfate heptahydrate in Pedobacter sp. GW460-11-11-14-LB5

For stress Zinc sulfate heptahydrate across organisms