Experiment set1IT017 for Rhodanobacter denitrificans FW104-10B01

Compare to:

R2A control

200 most important genes:

  gene name fitness t score description  
LRK54_RS17505 -5.0 -3.5 preprotein translocase subunit SecG compare
LRK54_RS10150 -4.8 -3.3 DNA topoisomerase I compare
LRK54_RS04350 -4.3 -5.9 phosphatidylcholine/phosphatidylserine synthase compare
LRK54_RS11290 -4.2 -2.9 dihydrolipoyllysine-residue acetyltransferase compare
LRK54_RS06785 -4.2 -2.9 protein-disulfide reductase DsbD compare
LRK54_RS14825 -4.1 -6.9 protease HtpX compare
LRK54_RS02090 -4.1 -21.0 NAD-glutamate dehydrogenase compare
LRK54_RS06885 -4.0 -10.4 rhodanese-like domain-containing protein compare
LRK54_RS02895 -4.0 -10.7 rhomboid family intramembrane serine protease compare
LRK54_RS12670 -3.9 -13.3 glycosyltransferase compare
LRK54_RS14590 -3.8 -9.2 N-acetylmuramoyl-L-alanine amidase compare
LRK54_RS14695 -3.8 -18.1 rhomboid family intramembrane serine protease compare
LRK54_RS00690 -3.8 -16.9 2-methylcitrate synthase compare
LRK54_RS04720 -3.7 -10.3 phosphoribosylformylglycinamidine synthase compare
LRK54_RS06470 -3.7 -15.6 carboxy terminal-processing peptidase compare
LRK54_RS00695 -3.7 -6.1 methylisocitrate lyase compare
LRK54_RS03125 -3.6 -2.5 preprotein translocase subunit YajC compare
LRK54_RS12860 -3.6 -5.5 RNase adapter RapZ compare
LRK54_RS12595 -3.6 -7.2 (2Fe-2S)-binding protein compare
LRK54_RS04585 -3.6 -6.0 muramoyltetrapeptide carboxypeptidase compare
LRK54_RS00440 -3.6 -9.5 high frequency lysogenization protein HflD compare
LRK54_RS16660 -3.6 -13.8 VTT domain-containing protein compare
LRK54_RS03710 -3.5 -11.1 tetratricopeptide repeat protein compare
LRK54_RS00615 -3.5 -9.9 protease modulator HflC compare
LRK54_RS06755 -3.5 -25.9 LTA synthase family protein compare
LRK54_RS11975 -3.5 -8.6 SLC13 family permease compare
LRK54_RS16940 -3.4 -6.5 RNA polymerase sigma factor RpoE compare
LRK54_RS05415 -3.3 -11.9 TetR/AcrR family transcriptional regulator compare
LRK54_RS06685 -3.3 -17.9 TolC family outer membrane protein compare
LRK54_RS00620 -3.3 -13.2 FtsH protease activity modulator HflK compare
LRK54_RS05550 -3.3 -5.0 FAD-binding protein compare
LRK54_RS11385 -3.3 -8.4 co-chaperone DjlA compare
LRK54_RS00675 -3.3 -14.5 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK54_RS12460 -3.2 -3.1 hypothetical protein compare
LRK54_RS08585 -3.2 -26.3 RimK family alpha-L-glutamate ligase compare
LRK54_RS12945 -3.1 -12.1 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK54_RS11170 -3.1 -6.7 NADP-dependent malic enzyme compare
LRK54_RS03290 -3.1 -2.2 RIP metalloprotease RseP compare
LRK54_RS02070 -3.1 -8.4 acyl-CoA dehydrogenase family protein compare
LRK54_RS05650 -3.1 -6.2 ABC transporter ATP-binding protein compare
LRK54_RS16730 -3.0 -4.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
LRK54_RS02445 -2.9 -3.9 membrane protein insertion efficiency factor YidD compare
LRK54_RS12865 -2.9 -12.4 HPr(Ser) kinase/phosphatase compare
LRK54_RS17270 -2.8 -4.7 DNA translocase FtsK compare
LRK54_RS00670 -2.8 -5.1 OmpA family protein compare
LRK54_RS13760 -2.8 -12.1 trypsin-like peptidase domain-containing protein compare
LRK54_RS11175 -2.7 -13.5 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK54_RS16755 -2.7 -4.5 SurA N-terminal domain-containing protein compare
LRK54_RS18050 -2.7 -16.1 lipopolysaccharide assembly protein LapB compare
LRK54_RS12590 -2.7 -17.6 molybdopterin-dependent oxidoreductase compare
LRK54_RS12190 -2.7 -10.3 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
LRK54_RS04630 -2.6 -3.9 energy-dependent translational throttle protein EttA compare
LRK54_RS03110 -2.5 -12.6 nucleotidyltransferase family protein compare
LRK54_RS00680 -2.5 -11.1 TerC family protein compare
LRK54_RS11375 -2.5 -10.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK54_RS16615 -2.4 -3.3 phosphopyruvate hydratase compare
LRK54_RS05985 -2.4 -1.7 response regulator transcription factor compare
LRK54_RS05530 -2.4 -10.0 electron transfer flavoprotein-ubiquinone oxidoreductase compare
LRK54_RS15035 -2.3 -8.8 M48 family metalloprotease compare
LRK54_RS05655 -2.3 -4.6 ABC transporter permease compare
LRK54_RS05540 -2.3 -6.3 glycosyltransferase family 2 protein compare
LRK54_RS02460 -2.3 -12.3 phosphoglycolate phosphatase compare
LRK54_RS05495 -2.3 -7.5 met regulon transcriptional regulator MetJ compare
LRK54_RS09805 -2.3 -8.5 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK54_RS05200 -2.3 -5.0 hypothetical protein compare
LRK54_RS02325 -2.3 -5.0 SDR family oxidoreductase compare
LRK54_RS10950 -2.2 -15.0 S41 family peptidase compare
LRK54_RS05980 -2.2 -1.5 ATP-binding protein compare
LRK54_RS08750 -2.2 -6.8 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
LRK54_RS02440 -2.2 -3.3 RNA polymerase-binding protein DksA compare
LRK54_RS12855 -2.2 -6.8 PTS fructose transporter subunit IIA compare
LRK54_RS12305 -2.2 -12.6 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
LRK54_RS16110 -2.1 -10.8 polyhydroxyalkanoate synthesis repressor PhaR compare
LRK54_RS12295 -2.1 -5.2 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
LRK54_RS05740 -2.1 -8.6 phosphoglycerate kinase compare
LRK54_RS03895 -2.1 -13.7 lipopolysaccharide biosynthesis protein compare
LRK54_RS05615 -2.0 -14.1 hypothetical protein compare
LRK54_RS16665 -2.0 -11.5 peptidoglycan DD-metalloendopeptidase family protein compare
LRK54_RS05785 -2.0 -8.6 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK54_RS10185 -1.9 -15.7 RDD family protein compare
LRK54_RS15265 -1.9 -9.4 acetyl-CoA C-acyltransferase compare
LRK54_RS02275 -1.9 -5.0 enoyl-CoA hydratase-related protein compare
LRK54_RS16865 -1.9 -9.2 protein phosphatase 2C domain-containing protein compare
LRK54_RS00345 -1.9 -4.5 TraB/GumN family protein compare
LRK54_RS16600 -1.8 -11.1 aminopeptidase P family protein compare
LRK54_RS02855 -1.8 -7.3 type I restriction-modification system subunit M compare
LRK54_RS02535 -1.8 -7.2 50S ribosomal protein L9 compare
LRK54_RS10355 -1.7 -3.1 threonine synthase compare
LRK54_RS18060 -1.7 -6.2 polysaccharide biosynthesis protein compare
LRK54_RS06675 -1.7 -9.7 TetR/AcrR family transcriptional regulator compare
LRK54_RS15935 -1.7 -9.3 rRNA pseudouridine synthase compare
LRK54_RS05610 -1.7 -10.0 GtrA family protein compare
LRK54_RS03405 -1.7 -9.5 ribonuclease G compare
LRK54_RS13830 -1.7 -8.3 SDR family NAD(P)-dependent oxidoreductase compare
LRK54_RS06610 -1.7 -13.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
LRK54_RS02335 -1.7 -7.7 FUSC family protein compare
LRK54_RS11785 -1.7 -12.8 VacJ family lipoprotein compare
LRK54_RS15165 -1.6 -2.8 enoyl-CoA hydratase-related protein compare
LRK54_RS13780 -1.6 -7.7 glutathione S-transferase N-terminal domain-containing protein compare
LRK54_RS10855 -1.6 -3.6 protein-export chaperone SecB compare
LRK54_RS16875 -1.6 -12.7 kinase/pyrophosphorylase compare
LRK54_RS00405 -1.6 -6.8 FHA domain-containing protein compare
LRK54_RS00085 -1.6 -2.4 tetratricopeptide repeat protein compare
LRK54_RS00080 -1.5 -8.1 helix-turn-helix domain-containing protein compare
LRK54_RS11765 -1.5 -8.4 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
LRK54_RS04710 -1.5 -4.1 glycosyltransferase family 2 protein compare
LRK54_RS11760 -1.4 -9.8 ATP-binding cassette domain-containing protein compare
LRK54_RS09345 -1.4 -2.6 ATP-binding protein compare
LRK54_RS16930 -1.4 -8.7 hypothetical protein compare
LRK54_RS16650 -1.4 -6.3 5'/3'-nucleotidase SurE compare
LRK54_RS05630 -1.4 -6.9 D-sedoheptulose 7-phosphate isomerase compare
LRK54_RS16655 -1.4 -2.6 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
LRK54_RS18055 -1.4 -5.5 glycosyltransferase family 4 protein compare
LRK54_RS11775 -1.4 -10.8 ABC transporter substrate-binding protein compare
LRK54_RS15020 -1.4 -11.0 polyphosphate kinase 1 compare
LRK54_RS02050 -1.4 -10.5 thiamine pyrophosphate-dependent enzyme compare
LRK54_RS04450 -1.4 -6.1 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS17205 -1.4 -5.7 heavy metal translocating P-type ATPase compare
LRK54_RS05670 -1.3 -5.8 glucose-1-phosphate thymidylyltransferase RfbA compare
LRK54_RS08520 -1.3 -11.0 ATP-dependent protease ATPase subunit HslU compare
LRK54_RS01410 -1.3 -10.2 ABC transporter ATP-binding protein/permease compare
LRK54_RS17215 -1.3 -4.1 cytochrome-c oxidase, cbb3-type subunit III compare
LRK54_RS17225 -1.3 -4.0 cytochrome-c oxidase, cbb3-type subunit II compare
LRK54_RS05535 -1.3 -5.6 glycosyltransferase family 2 protein compare
LRK54_RS12580 -1.3 -3.0 hypothetical protein compare
LRK54_RS09000 -1.3 -8.8 HAMP domain-containing histidine kinase compare
LRK54_RS11770 -1.3 -10.6 outer membrane lipid asymmetry maintenance protein MlaD compare
LRK54_RS07775 -1.3 -4.1 MarR family transcriptional regulator compare
LRK54_RS03925 -1.3 -8.7 glycosyltransferase family 4 protein compare
LRK54_RS16015 -1.3 -9.4 formylglycine-generating enzyme family protein compare
LRK54_RS01285 -1.2 -5.1 3-deoxy-D-manno-octulosonic acid kinase compare
LRK54_RS12690 -1.2 -4.7 hypothetical protein compare
LRK54_RS02380 -1.2 -4.7 argininosuccinate lyase compare
LRK54_RS04625 -1.2 -8.5 serine hydroxymethyltransferase compare
LRK54_RS02175 -1.2 -7.5 exodeoxyribonuclease V subunit gamma compare
LRK54_RS08760 -1.2 -3.8 transaldolase compare
LRK54_RS02870 -1.2 -4.8 DUF502 domain-containing protein compare
LRK54_RS12300 -1.2 -3.8 Co2+/Mg2+ efflux protein ApaG compare
LRK54_RS00305 -1.1 -8.3 asparagine synthase B compare
LRK54_RS16735 -1.1 -9.4 endopeptidase La compare
LRK54_RS00320 -1.1 -2.8 phosphoglycerate mutase compare
LRK54_RS05775 -1.1 -7.0 pyruvate kinase compare
LRK54_RS02285 -1.1 -8.0 hydroxymethylglutaryl-CoA lyase compare
LRK54_RS03930 -1.1 -7.9 glycosyltransferase family 2 protein compare
LRK54_RS06495 -1.1 -8.0 septal ring lytic transglycosylase RlpA family protein compare
LRK54_RS16720 -1.1 -5.2 trigger factor compare
LRK54_RS04305 -1.1 -3.1 shikimate kinase compare
LRK54_RS09125 -1.1 -3.5 hypothetical protein compare
LRK54_RS13910 -1.1 -4.9 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA compare
LRK54_RS03200 -1.1 -4.3 integration host factor subunit alpha compare
LRK54_RS16740 -1.0 -3.2 HU family DNA-binding protein compare
LRK54_RS15605 -1.0 -4.6 hypothetical protein compare
LRK54_RS09100 -1.0 -7.9 acetyl-CoA C-acetyltransferase compare
LRK54_RS08670 -1.0 -8.0 LacI family transcriptional regulator compare
LRK54_RS08930 -1.0 -4.1 XRE family transcriptional regulator compare
LRK54_RS03395 -1.0 -9.3 metalloprotease TldD compare
LRK54_RS16935 -1.0 -8.0 bifunctional diguanylate cyclase/phosphodiesterase compare
LRK54_RS06810 -1.0 -6.3 50S ribosomal protein L11 methyltransferase compare
LRK54_RS09945 -1.0 -5.2 class I SAM-dependent methyltransferase compare
LRK54_RS03105 -1.0 -7.4 phosphotransferase compare
LRK54_RS06865 -1.0 -6.1 uroporphyrinogen-III C-methyltransferase compare
LRK54_RS04995 -1.0 -4.4 LacI family DNA-binding transcriptional regulator compare
LRK54_RS09110 -1.0 -8.9 phospholipase D family protein compare
LRK54_RS08305 -1.0 -8.4 alpha/beta fold hydrolase compare
LRK54_RS10665 -1.0 -8.5 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
LRK54_RS12830 -1.0 -3.4 YeiH family protein compare
LRK54_RS06860 -1.0 -7.2 hypothetical protein compare
LRK54_RS12625 -1.0 -5.9 bifunctional aspartate kinase/diaminopimelate decarboxylase compare
LRK54_RS16810 -1.0 -2.1 hypothetical protein compare
LRK54_RS14670 -1.0 -1.3 NrsF family protein compare
LRK54_RS03745 -0.9 -5.6 NAD(P)H:quinone oxidoreductase compare
LRK54_RS02180 -0.9 -5.3 UvrD-helicase domain-containing protein compare
LRK54_RS05660 -0.9 -6.0 PLP-dependent aspartate aminotransferase family protein compare
LRK54_RS04060 -0.9 -6.4 isoaspartyl peptidase/L-asparaginase compare
LRK54_RS05665 -0.9 -3.9 dTDP-glucose 4,6-dehydratase compare
LRK54_RS00175 -0.9 -2.2 transposase compare
LRK54_RS11055 -0.9 -7.3 lipid-binding SYLF domain-containing protein compare
LRK54_RS09250 -0.9 -8.3 rhomboid family intramembrane serine protease compare
LRK54_RS12005 -0.9 -5.1 30S ribosomal protein S6--L-glutamate ligase compare
LRK54_RS13835 -0.9 -7.0 YhgN family NAAT transporter compare
LRK54_RS09825 -0.9 -5.6 alpha/beta hydrolase compare
LRK54_RS09845 -0.9 -7.7 efflux RND transporter permease subunit compare
LRK54_RS04035 -0.9 -5.3 ATP-binding protein compare
LRK54_RS00815 -0.8 -3.7 pseudouridine synthase compare
LRK54_RS03375 -0.8 -6.4 metalloprotease PmbA compare
LRK54_RS05640 -0.8 -5.5 GDP-mannose 4,6-dehydratase compare
LRK54_RS13915 -0.8 -6.9 beta-ketoacyl-ACP synthase I compare
LRK54_RS11565 -0.8 -2.6 anthranilate phosphoribosyltransferase compare
LRK54_RS01580 -0.8 -4.7 imidazole glycerol phosphate synthase subunit HisF compare
LRK54_RS05645 -0.8 -6.5 glycosyltransferase compare
LRK54_RS00805 -0.8 -2.7 segregation/condensation protein A compare
LRK54_RS05635 -0.8 -5.6 dehydrogenase compare
LRK54_RS04895 -0.8 -3.1 tol-pal system-associated acyl-CoA thioesterase compare
LRK54_RS15330 -0.8 -4.1 hypothetical protein compare
LRK54_RS03890 -0.8 -7.4 hypothetical protein compare
LRK54_RS06910 -0.8 -6.6 glutathionylspermidine synthase family protein compare
LRK54_RS11285 -0.8 -3.5 ABC transporter ATP-binding protein compare
LRK54_RS04265 -0.8 -3.2 YggT family protein compare
LRK54_RS00810 -0.8 -2.5 SMC-Scp complex subunit ScpB compare
LRK54_RS11280 -0.8 -7.3 membrane protein compare


Specific Phenotypes

None in this experiment

For Rhodanobacter denitrificans FW104-10B01 in r2a_control experiments