Experiment set1IT017 for Paraburkholderia graminis OAS925

Compare to:

Potassium acetate carbon source

200 most important genes:

  gene name fitness t score description  
ABIE53_000667 -4.7 -6.5 glycerol-3-phosphate dehydrogenase (NAD(P)+) compare
ABIE53_005863 -4.3 -12.7 cyclic di-GMP phosphodiesterase Gmr compare
ABIE53_001140 -4.1 -2.8 dTDP-4-dehydrorhamnose reductase compare
ABIE53_001664 -3.9 -16.1 acetyl-CoA synthetase compare
ABIE53_003752 -3.8 -1.6 cytochrome c-type biogenesis protein CcsB compare
ABIE53_002536 -3.8 -14.6 isocitrate lyase compare
ABIE53_000414 -3.8 -17.8 homoserine O-acetyltransferase compare
ABIE53_003428 -3.7 -3.6 phosphoglycerate kinase compare
ABIE53_004811 -3.7 -7.1 tryptophan synthase alpha chain compare
ABIE53_000838 -3.7 -9.9 starvation-inducible DNA-binding protein compare
ABIE53_003157 -3.7 -8.9 chorismate mutase/prephenate dehydratase compare
ABIE53_001232 -3.7 -2.5 sirohydrochlorin cobaltochelatase compare
ABIE53_000663 -3.7 -15.2 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
ABIE53_002788 -3.6 -6.1 IclR family KDG regulon transcriptional repressor compare
ABIE53_003305 -3.6 -8.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE53_001226 -3.6 -7.7 sulfite reductase (NADPH) hemoprotein beta-component compare
ABIE53_000061 -3.6 -6.0 methylenetetrahydrofolate reductase (NADPH) compare
ABIE53_003017 -3.6 -9.4 trehalose 6-phosphate phosphatase compare
ABIE53_000768 -3.6 -12.0 FAD/FMN-containing dehydrogenase/Fe-S oxidoreductase compare
ABIE53_004801 -3.5 -8.2 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit compare
ABIE53_001588 -3.5 -5.3 triosephosphate isomerase compare
ABIE53_003734 -3.5 -9.6 glutamate synthase (NADPH/NADH) large chain compare
ABIE53_003434 -3.5 -9.2 heptosyltransferase-2 compare
ABIE53_000423 -3.4 -4.7 DnaK suppressor protein compare
ABIE53_003531 -3.4 -2.3 Fur family ferric uptake transcriptional regulator compare
ABIE53_002485 -3.4 -13.6 pyruvate,water dikinase compare
ABIE53_003735 -3.3 -4.5 hypothetical protein compare
ABIE53_002538 -3.3 -4.4 DNA-binding transcriptional LysR family regulator compare
ABIE53_003306 -3.3 -9.8 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE53_003536 -3.3 -7.2 glyceraldehyde 3-phosphate dehydrogenase compare
ABIE53_004804 -3.2 -8.3 3-isopropylmalate dehydrogenase compare
ABIE53_004817 -3.2 -10.3 O-succinylhomoserine sulfhydrylase compare
ABIE53_003749 -3.2 -7.1 diaminopimelate decarboxylase compare
ABIE53_003158 -3.1 -4.8 phosphoserine aminotransferase compare
ABIE53_000649 -3.1 -3.6 peroxiredoxin compare
ABIE53_003588 -3.0 -4.6 glutamate 5-kinase compare
ABIE53_003733 -3.0 -4.6 glutamate synthase domain-containing protein 3 compare
ABIE53_004630 -3.0 -1.2 hypothetical protein compare
ABIE53_004803 -3.0 -7.1 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit compare
ABIE53_001148 -2.9 -10.3 glycosyltransferase involved in cell wall biosynthesis compare
ABIE53_002116 -2.9 -4.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABIE53_002077 -2.8 -1.9 phosphoserine phosphatase compare
ABIE53_000153 -2.8 -14.7 O-antigen ligase compare
ABIE53_003494 -2.8 -3.7 Holliday junction DNA helicase RuvA compare
ABIE53_002857 -2.8 -13.7 phosphomethylpyrimidine synthase compare
ABIE53_002762 -2.7 -4.1 enolase compare
ABIE53_003815 -2.7 -3.2 tRNA-Arg compare
ABIE53_003640 -2.7 -8.9 anthranilate synthase component 1 compare
ABIE53_001229 -2.6 -8.3 sulfate adenylyltransferase subunit 2 compare
ABIE53_005596 -2.6 -9.6 DNA-binding IclR family transcriptional regulator compare
ABIE53_001160 -2.6 -8.4 GT2 family glycosyltransferase compare
ABIE53_003449 -2.6 -15.2 two-component system OmpR family response regulator compare
ABIE53_002117 -2.6 -6.6 ATP-dependent Lon protease compare
ABIE53_001230 -2.6 -11.0 sulfate adenylyltransferase subunit 1 compare
ABIE53_001644 -2.6 -3.9 aromatic-amino-acid transaminase compare
ABIE53_001142 -2.6 -6.5 hypothetical protein compare
ABIE53_003638 -2.5 -3.4 ribulose-phosphate 3-epimerase compare
ABIE53_000840 -2.5 -6.5 pyrroline-5-carboxylate reductase compare
ABIE53_005529 -2.5 -3.9 putative transcriptional regulator YheO compare
ABIE53_003450 -2.5 -12.1 two-component system sensor histidine kinase TctE compare
ABIE53_000262 -2.4 -2.3 chromosome partitioning protein compare
ABIE53_001575 -2.4 -2.9 acetolactate synthase-1/3 small subunit compare
ABIE53_000666 -2.4 -3.7 preprotein translocase subunit SecB compare
ABIE53_002004 -2.4 -6.2 anti-sigma factor RsiW compare
ABIE53_003142 -2.4 -11.2 acetoin utilization deacetylase AcuC-like enzyme compare
ABIE53_002794 -2.3 -3.5 PAS domain S-box-containing protein compare
ABIE53_005782 -2.3 -1.7 hypothetical protein compare
ABIE53_001666 -2.3 -10.8 cation/acetate symporter compare
ABIE53_001228 -2.2 -6.5 phosphoadenosine phosphosulfate reductase compare
ABIE53_003159 -2.2 -7.4 phosphoserine aminotransferase compare
ABIE53_003445 -2.2 -4.6 succinyl-CoA synthetase beta subunit compare
ABIE53_000850 -2.2 -7.6 3-deoxy-7-phosphoheptulonate synthase compare
ABIE53_001143 -2.2 -12.5 GT2 family glycosyltransferase compare
ABIE53_001385 -2.2 -1.7 uncharacterized protein YjbJ (UPF0337 family) compare
ABIE53_000063 -2.2 -4.6 adenosylhomocysteinase compare
ABIE53_003162 -2.2 -3.2 OOP family OmpA-OmpF porin compare
ABIE53_001141 -2.2 -9.1 GT2 family glycosyltransferase compare
ABIE53_003940 -2.1 -2.7 hypothetical protein compare
ABIE53_001163 -2.1 -6.3 FlaA1/EpsC-like NDP-sugar epimerase compare
ABIE53_002540 -2.1 -13.4 malate synthase conserved
ABIE53_001771 -2.1 -3.4 arginine N-succinyltransferase compare
ABIE53_000236 -2.1 -7.6 aminomethyltransferase compare
ABIE53_003444 -2.1 -4.7 succinyl-CoA synthetase alpha subunit compare
ABIE53_003298 -2.1 -5.6 phosphoribosylglycinamide formyltransferase-1 compare
ABIE53_000403 -2.1 -2.8 rod shape-determining protein MreD compare
ABIE53_002528 -2.0 -2.3 LPLT family lysophospholipid transporter-like MFS transporter compare
ABIE53_004482 -2.0 -1.6 TetR/AcrR family transcriptional repressor of nem operon compare
ABIE53_004462 -2.0 -1.6 beta-lactamase class A compare
ABIE53_001421 -2.0 -2.3 cytochrome c553 compare
ABIE53_001227 -2.0 -1.5 uncharacterized protein (DUF934 family) compare
ABIE53_002101 -1.9 -7.6 two-component system phosphate regulon response regulator OmpR compare
ABIE53_001149 -1.9 -5.4 acetyltransferase-like isoleucine patch superfamily enzyme compare
ABIE53_001150 -1.9 -4.8 glycosyltransferase involved in cell wall biosynthesis compare
ABIE53_000678 -1.8 -7.2 cytochrome c oxidase subunit 3 compare
ABIE53_000598 -1.8 -5.6 thiol:disulfide interchange protein DsbA compare
ABIE53_002138 -1.8 -6.9 glucose-6-phosphate isomerase compare
ABIE53_003541 -1.8 -8.0 RNAse (barnase) inhibitor barstar compare
ABIE53_003186 -1.8 -7.7 disulfide bond formation protein DsbB compare
ABIE53_000833 -1.7 -5.2 ATP-dependent DNA helicase RecG compare
ABIE53_000238 -1.7 -14.3 glycine dehydrogenase compare
ABIE53_003495 -1.7 -3.2 Holliday junction DNA helicase RuvB compare
ABIE53_000465 -1.7 -10.6 cation diffusion facilitator family transporter compare
ABIE53_000122 -1.7 -1.6 hypothetical protein compare
ABIE53_004227 -1.7 -5.7 signal transduction histidine kinase compare
ABIE53_002168 -1.7 -6.7 hypothetical protein compare
ABIE53_001665 -1.7 -7.7 putative solute:sodium symporter small subunit compare
ABIE53_000683 -1.7 -8.8 protoheme IX farnesyltransferase compare
ABIE53_003210 -1.6 -1.6 acyl carrier protein compare
ABIE53_000858 -1.5 -8.3 heat-inducible transcriptional repressor compare
ABIE53_006282 -1.5 -3.3 DNA-binding HxlR family transcriptional regulator compare
ABIE53_004325 -1.5 -2.4 hypothetical protein compare
ABIE53_003586 -1.5 -6.0 putative (di)nucleoside polyphosphate hydrolase compare
ABIE53_000674 -1.5 -6.7 cytochrome c oxidase subunit 1 compare
ABIE53_001041 -1.5 -1.9 hypothetical protein compare
ABIE53_003565 -1.5 -4.0 thiol-disulfide isomerase/thioredoxin compare
ABIE53_000394 -1.4 -8.3 nitrogen fixation/metabolism regulation signal transduction histidine kinase compare
ABIE53_001992 -1.4 -7.5 sulfate transport system permease protein compare
ABIE53_003674 -1.4 -4.8 AcrR family transcriptional regulator compare
ABIE53_003361 -1.4 -5.5 integrase/recombinase XerD compare
ABIE53_000650 -1.4 -7.6 thiol-disulfide isomerase/thioredoxin compare
ABIE53_000453 -1.4 -1.1 hypothetical protein compare
ABIE53_002739 -1.4 -4.1 outer membrane protein assembly factor BamB compare
ABIE53_003426 -1.4 -2.7 fructose-bisphosphate aldolase class II compare
ABIE53_001858 -1.4 -2.1 uncharacterized protein YqgQ compare
ABIE53_005662 -1.4 -1.1 DNA replication protein DnaC compare
ABIE53_002507 -1.3 -4.3 [protein-PII] uridylyltransferase compare
ABIE53_001198 -1.3 -1.7 urease subunit gamma compare
ABIE53_004910 -1.3 -1.8 hypothetical protein compare
ABIE53_005383 -1.3 -3.0 methyl-accepting chemotaxis protein compare
ABIE53_000682 -1.3 -6.5 cytochrome c oxidase assembly protein subunit 15 compare
ABIE53_004922 -1.3 -1.8 LysR family pca operon transcriptional activator compare
ABIE53_001544 -1.3 -2.8 coproporphyrinogen III oxidase compare
ABIE53_004307 -1.3 -2.3 hypothetical protein compare
ABIE53_003543 -1.2 -9.1 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) compare
ABIE53_001161 -1.2 -4.2 nucleoside-diphosphate-sugar epimerase compare
ABIE53_001037 -1.2 -2.0 hypothetical protein compare
ABIE53_003561 -1.2 -1.2 exoribonuclease-2 compare
ABIE53_000944 -1.2 -1.3 hypothetical protein compare
ABIE53_000843 -1.2 -1.7 glycolate oxidase FAD binding subunit compare
ABIE53_004852 -1.2 -7.6 DNA polymerase-1 compare
ABIE53_002539 -1.2 -3.1 2-haloacid dehalogenase compare
ABIE53_001993 -1.2 -5.9 sulfate transport system ATP-binding protein compare
ABIE53_001420 -1.2 -3.7 cytochrome c553 compare
ABIE53_003160 -1.2 -7.1 hypothetical protein compare
ABIE53_005984 -1.2 -3.1 nitrite reductase/ring-hydroxylating ferredoxin subunit compare
ABIE53_006565 -1.2 -1.4 hypothetical protein compare
ABIE53_004263 -1.2 -1.4 nicotinate dehydrogenase subunit A compare
ABIE53_005905 -1.2 -2.2 alkyl hydroperoxide reductase subunit F compare
ABIE53_006272 -1.2 -4.0 AcrR family transcriptional regulator compare
ABIE53_002587 -1.2 -2.1 DHA2 family multidrug resistance protein compare
ABIE53_000237 -1.2 -2.0 glycine cleavage system H protein compare
ABIE53_001990 -1.2 -7.6 sulfate/thiosulfate-binding protein compare
ABIE53_005566 -1.1 -4.2 FMN reductase compare
ABIE53_002446 -1.1 -2.0 hypothetical protein compare
ABIE53_001846 -1.1 -3.8 TetR/AcrR family transcriptional repressor of nem operon compare
ABIE53_001991 -1.1 -3.6 sulfate transport system permease protein compare
ABIE53_000875 -1.1 -4.1 tRNA dimethylallyltransferase compare
ABIE53_002546 -1.1 -1.5 cell wall-associated NlpC family hydrolase compare
ABIE53_003231 -1.1 -1.6 DNA-directed RNA polymerase subunit omega compare
ABIE53_001769 -1.1 -1.5 succinylornithine aminotransferase compare
ABIE53_004189 -1.1 -1.8 hypothetical protein compare
ABIE53_005464 -1.1 -3.4 AcrR family transcriptional regulator compare
ABIE53_000201 -1.1 -1.0 hypothetical protein compare
ABIE53_003571 -1.1 -1.7 thiol peroxidase compare
ABIE53_001197 -1.1 -1.6 urease subunit beta compare
ABIE53_001118 -1.1 -2.3 DNA-binding HxlR family transcriptional regulator compare
ABIE53_002450 -1.1 -4.1 cell division protein ZapE compare
ABIE53_000608 -1.1 -3.9 DNA-binding IclR family transcriptional regulator compare
ABIE53_005772 -1.1 -1.4 putative PurR-regulated permease PerM compare
ABIE53_005283 -1.1 -1.3 hypothetical protein compare
ABIE53_006342 -1.1 -3.2 DNA-binding GntR family transcriptional regulator compare
ABIE53_000681 -1.1 -7.2 cytochrome oxidase Cu insertion factor (SCO1/SenC/PrrC family) compare
ABIE53_005695 -1.1 -1.4 L-rhamnose mutarotase compare
ABIE53_000884 -1.1 -3.1 biopolymer transport protein TolR compare
ABIE53_004484 -1.1 -1.2 hypothetical protein compare
ABIE53_003043 -1.0 -8.4 RNA polymerase sigma-70 factor (ECF subfamily) compare
ABIE53_006123 -1.0 -2.5 hypothetical protein compare
ABIE53_003460 -1.0 -4.5 mono/diheme cytochrome c family protein compare
ABIE53_000864 -1.0 -2.3 molecular chaperone DnaK compare
ABIE53_000673 -1.0 -5.4 cytochrome c oxidase subunit 2 compare
ABIE53_002703 -1.0 -0.9 aspartate kinase compare
ABIE53_002862 -1.0 -5.0 outer membrane protein assembly factor BamC compare
ABIE53_002487 -1.0 -2.4 regulator of PEP synthase PpsR (kinase-PPPase family) compare
ABIE53_001760 -1.0 -1.6 DNA-binding transcriptional LysR family regulator compare
ABIE53_002805 -1.0 -4.7 two-component system nitrogen regulation sensor histidine kinase GlnL compare
ABIE53_004007 -1.0 -1.2 hypothetical protein compare
ABIE53_005950 -1.0 -1.6 plastocyanin compare
ABIE53_005181 -1.0 -2.2 hypothetical protein compare
ABIE53_000118 -1.0 -1.7 two-component system chemotaxis response regulator CheY compare
ABIE53_001757 -1.0 -1.8 ribulose-5-phosphate 4-epimerase/fuculose-1-phosphate aldolase compare
ABIE53_006137 -1.0 -2.0 membrane dipeptidase compare
ABIE53_005665 -1.0 -3.0 hypothetical protein compare
ABIE53_002032 -1.0 -3.7 Rrf2 family nitric oxide-sensitive transcriptional repressor compare
ABIE53_002804 -1.0 -4.1 two-component system nitrogen regulation response regulator GlnG compare
ABIE53_002782 -0.9 -4.0 Rrf2 family iron-sulfur cluster assembly transcriptional regulator compare
ABIE53_003737 -0.9 -6.6 outer membrane protein compare
ABIE53_001994 -0.9 -4.0 LysR family cys regulon transcriptional activator compare
ABIE53_006508 -0.9 -3.1 GntR family transcriptional repressor for pyruvate dehydrogenase complex compare
ABIE53_003368 -0.9 -1.6 antitoxin VapB compare
ABIE53_005752 -0.9 -3.0 DNA-binding PadR family transcriptional regulator compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Potassium acetate in Paraburkholderia graminis OAS925

For carbon source Potassium acetate across organisms