Experiment set1IT017 for Burkholderia phytofirmans PsJN

Compare to:

Tween 20 carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS16270 -7.8 -3.8 phosphoglycerate kinase compare
BPHYT_RS02610 -7.8 -4.1 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS06555 -7.6 -5.3 ketol-acid reductoisomerase compare
BPHYT_RS17680 -7.6 -3.6 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS14865 -7.4 -3.1 UDP-glucose 6-dehydrogenase compare
BPHYT_RS16835 -7.4 -4.6 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS09500 -7.3 -4.4 glucose-6-phosphate isomerase compare
BPHYT_RS12815 -7.2 -5.0 IclR family transcriptional regulator compare
BPHYT_RS06190 -7.1 -3.3 heptosyltransferase compare
BPHYT_RS17675 -7.0 -1.7 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS12530 -7.0 -6.7 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS33835 -6.9 -8.0 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS14915 -6.8 -6.1 phosphoserine aminotransferase compare
BPHYT_RS04740 -6.7 -4.6 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS04370 -6.4 -1.5 glycosyl transferase compare
BPHYT_RS14910 -6.4 -11.7 chorismate mutase compare
BPHYT_RS06900 -6.4 -4.4 aspartate aminotransferase compare
BPHYT_RS17685 -6.4 -8.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS33920 -6.2 -4.3 type II citrate synthase compare
BPHYT_RS16905 -6.2 -4.3 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS06175 -6.1 -3.3 LPS biosynthesis compare
BPHYT_RS09515 -6.1 -4.0 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS14895 -6.1 -3.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS15915 -6.0 -7.2 ornithine carbamoyltransferase compare
BPHYT_RS08955 -6.0 -4.0 homoserine dehydrogenase compare
BPHYT_RS04285 -6.0 -2.5 rhamnosyltransferase compare
BPHYT_RS15620 -6.0 -4.0 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS33645 -5.9 -3.9 homoserine kinase compare
BPHYT_RS04385 -5.8 -3.6 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS17690 -5.8 -6.8 imidazole glycerol phosphate synthase compare
BPHYT_RS12985 -5.8 -2.7 amino acid acetyltransferase compare
BPHYT_RS17890 -5.8 -2.4 shikimate kinase compare
BPHYT_RS17715 -5.7 -10.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS33915 -5.7 -6.5 isopropylmalate isomerase compare
BPHYT_RS13220 -5.7 -6.2 phosphomethylpyrimidine synthase compare
BPHYT_RS14845 -5.6 -3.0 cysteine synthase compare
BPHYT_RS33875 -5.6 -5.4 tryptophan synthase subunit alpha compare
BPHYT_RS18320 -5.6 -11.0 orotate phosphoribosyltransferase compare
BPHYT_RS33900 -5.6 -10.0 3-isopropylmalate dehydrogenase compare
BPHYT_RS06405 -5.6 -7.0 phosphoribosylamine--glycine ligase compare
BPHYT_RS15920 -5.5 -11.6 argininosuccinate synthase compare
BPHYT_RS14855 -5.5 -2.2 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS17855 -5.4 -19.5 glutamate synthase compare
BPHYT_RS18705 -5.3 -2.2 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS03150 -5.3 -9.2 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS26490 -5.3 -1.3 hypothetical protein compare
BPHYT_RS01590 -5.3 -4.7 methionine biosynthesis protein MetW compare
BPHYT_RS15670 -5.3 -7.0 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS06545 -5.2 -11.1 acetolactate synthase compare
BPHYT_RS33865 -5.2 -5.6 tryptophan synthase alpha chain compare
BPHYT_RS04725 -5.2 -6.6 sulfite reductase compare
BPHYT_RS02590 -5.2 -8.5 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS12845 -5.2 -11.4 ATPase compare
BPHYT_RS04720 -5.1 -4.5 transcriptional regulator compare
BPHYT_RS08850 -5.1 -2.4 transcriptional regulator compare
BPHYT_RS33880 -5.0 -8.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS19920 -5.0 -1.2 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS17400 -5.0 -4.7 anthranilate phosphoribosyltransferase compare
BPHYT_RS14190 -5.0 -11.6 carbamoyl phosphate synthase large subunit compare
BPHYT_RS17700 -5.0 -3.0 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS06610 -5.0 -1.7 triosephosphate isomerase compare
BPHYT_RS03535 -4.9 -5.3 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS29855 -4.9 -1.2 protein-tyrosine-phosphatase compare
BPHYT_RS17405 -4.9 -1.2 indole-3-glycerol phosphate synthase compare
BPHYT_RS12285 -4.8 -5.0 isocitrate lyase compare
BPHYT_RS03640 -4.8 -3.1 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS25500 -4.7 -1.9 hypothetical protein compare
BPHYT_RS08960 -4.6 -1.9 threonine synthase compare
BPHYT_RS16245 -4.6 -5.2 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS17390 -4.6 -11.2 anthranilate synthase subunit I compare
BPHYT_RS13705 -4.6 -4.4 chorismate synthase compare
BPHYT_RS17885 -4.6 -4.9 3-dehydroquinate synthase compare
BPHYT_RS27370 -4.5 -2.1 CoA transferase compare
BPHYT_RS17670 -4.5 -4.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS09315 -4.5 -1.1 chemotaxis protein CheY compare
BPHYT_RS18590 -4.5 -1.1 hypothetical protein compare
BPHYT_RS17380 -4.4 -7.5 ribulose-phosphate 3-epimerase compare
BPHYT_RS01595 -4.3 -7.2 homoserine O-acetyltransferase compare
BPHYT_RS19785 -4.3 -1.5 chemotaxis protein CheY compare
BPHYT_RS12055 -4.1 -12.1 phosphoenolpyruvate synthase compare
BPHYT_RS16255 -4.1 -5.6 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS16840 -4.1 -2.8 transketolase compare
BPHYT_RS02905 -3.9 -15.1 RNA polymerase subunit sigma-54 compare
BPHYT_RS17395 -3.8 -2.0 anthranilate synthase subunit II compare
BPHYT_RS03725 -3.8 -1.5 serine hydroxymethyltransferase compare
BPHYT_RS04290 -3.8 -2.4 glycosyl transferase family 2 compare
BPHYT_RS12940 -3.7 -6.3 signal transduction histidine kinase compare
BPHYT_RS08565 -3.6 -1.2 dihydroorotate dehydrogenase compare
BPHYT_RS23230 -3.6 -1.1 histidine kinase compare
BPHYT_RS04955 -3.5 -2.0 methionyl-tRNA synthetase compare
BPHYT_RS20305 -3.5 -3.5 hypothetical protein compare
BPHYT_RS09860 -3.4 -1.1 pilus assembly protein PilP compare
BPHYT_RS33840 -3.3 -4.0 amidophosphoribosyltransferase compare
BPHYT_RS04730 -3.1 -2.9 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS04965 -2.9 -4.8 ATP-binding protein compare
BPHYT_RS08235 -2.9 -1.2 nucleoprotein, Hfg, host factor I compare
BPHYT_RS10100 -2.9 -4.1 dihydroxy-acid dehydratase compare
BPHYT_RS12935 -2.9 -5.7 chemotaxis protein CheY compare
BPHYT_RS16675 -2.8 -2.4 dihydroorotase compare
BPHYT_RS33990 -2.8 -0.9 ATPase compare
BPHYT_RS08150 -2.8 -0.9 membrane protein compare
BPHYT_RS12150 -2.8 -11.0 PII uridylyl-transferase compare
BPHYT_RS03220 -2.7 -7.2 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) conserved
BPHYT_RS23875 -2.7 -1.1 sugar ABC transporter ATP-binding protein compare
BPHYT_RS14795 -2.7 -11.6 acyl-CoA dehydrogenase conserved
BPHYT_RS03625 -2.7 -8.0 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS04745 -2.7 -2.8 sulfate adenylyltransferase compare
BPHYT_RS18340 -2.6 -2.0 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS12305 -2.6 -7.0 Malate synthase (EC 2.3.3.9) (from data) conserved
BPHYT_RS06685 -2.5 -2.7 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS07325 -2.5 -1.0 GntR family transcriptional regulator compare
BPHYT_RS02480 -2.5 -1.2 alkaline phosphatase compare
BPHYT_RS05705 -2.5 -1.2 hypothetical protein compare
BPHYT_RS12060 -2.5 -1.6 hypothetical protein compare
BPHYT_RS22260 -2.5 -1.7 hypothetical protein compare
BPHYT_RS12465 -2.4 -2.8 inositol monophosphatase compare
BPHYT_RS21495 -2.4 -1.0 ABC transporter compare
BPHYT_RS06505 -2.4 -8.4 TetR family transcriptional regulator conserved
BPHYT_RS08950 -2.4 -6.3 aminotransferase compare
BPHYT_RS32860 -2.4 -1.0 hypothetical protein compare
BPHYT_RS17265 -2.3 -1.3 cell division protein compare
BPHYT_RS12295 -2.3 -2.2 LysR family transcriptional regulator compare
BPHYT_RS17520 -2.3 -3.4 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS27175 -2.3 -0.9 DNA-binding protein compare
BPHYT_RS09545 -2.3 -1.6 peptide methionine sulfoxide reductase compare
BPHYT_RS00770 -2.2 -1.0 conjugal transfer protein TraC compare
BPHYT_RS22355 -2.2 -1.9 HAD family hydrolase compare
BPHYT_RS09145 -2.0 -7.0 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS15415 -2.0 -8.3 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS05290 -2.0 -1.1 hypothetical protein compare
BPHYT_RS20095 -2.0 -0.8 transcriptional regulator compare
BPHYT_RS08245 -2.0 -3.4 anti-sigma factor compare
BPHYT_RS23840 -2.0 -2.4 methyltransferase compare
BPHYT_RS06075 -2.0 -4.3 hypothetical protein compare
BPHYT_RS27570 -2.0 -1.8 universal stress protein UspA compare
BPHYT_RS17530 -2.0 -6.5 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS28305 -2.0 -1.5 protein tyrosine phosphatase compare
BPHYT_RS33905 -1.9 -0.8 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS28535 -1.9 -1.0 response regulator receiver compare
BPHYT_RS02240 -1.9 -7.6 isocitrate dehydrogenase kinase/phosphatase conserved
BPHYT_RS05255 -1.9 -1.9 phage abortive infection protein compare
BPHYT_RS10240 -1.9 -0.9 translation initiation inhibitor compare
BPHYT_RS26355 -1.9 -1.3 hypothetical protein compare
BPHYT_RS08415 -1.9 -1.8 hypothetical protein compare
BPHYT_RS02365 -1.9 -1.0 hypothetical protein compare
BPHYT_RS04820 -1.8 -3.4 LysR family transcriptional regulator compare
BPHYT_RS19435 -1.8 -2.4 16S rRNA methyltransferase compare
BPHYT_RS23465 -1.8 -3.0 aliphatic nitrilase compare
BPHYT_RS23370 -1.8 -1.3 glycosyl transferase family 1 compare
BPHYT_RS00955 -1.8 -2.1 DNA polymerase compare
BPHYT_RS12725 -1.8 -8.4 regulator compare
BPHYT_RS21460 -1.8 -1.9 UDP-N-acetylglucosamine 2-epimerase compare
BPHYT_RS23275 -1.7 -2.8 3-methylcrotonyl-CoA carboxylase subunit alpha compare
BPHYT_RS02540 -1.7 -1.3 hypothetical protein compare
BPHYT_RS33125 -1.7 -1.1 hypothetical protein compare
BPHYT_RS03570 -1.7 -3.8 heat-inducible transcription repressor HrcA compare
BPHYT_RS25585 -1.7 -1.6 membrane protein compare
BPHYT_RS13645 -1.7 -9.5 threonine--tRNA ligase compare
BPHYT_RS00055 -1.6 -1.8 hypothetical protein compare
BPHYT_RS28055 -1.6 -2.6 membrane protein compare
BPHYT_RS20900 -1.6 -1.9 phytanoyl-CoA dioxygenase compare
BPHYT_RS31050 -1.6 -1.0 epimerase compare
BPHYT_RS06105 -1.6 -1.1 hypothetical protein compare
BPHYT_RS16665 -1.5 -1.8 peroxiredoxin compare
BPHYT_RS29745 -1.5 -1.4 phosphonopyruvate decarboxylase compare
BPHYT_RS05565 -1.5 -1.5 membrane protein compare
BPHYT_RS14900 -1.5 -1.7 prephenate dehydrogenase compare
BPHYT_RS09815 -1.5 -1.9 malate synthase compare
BPHYT_RS33965 -1.5 -1.5 methylcitrate synthase compare
BPHYT_RS28065 -1.5 -1.2 hypothetical protein compare
BPHYT_RS25970 -1.5 -0.8 urea amidolyase compare
BPHYT_RS33765 -1.5 -0.8 membrane protein compare
BPHYT_RS29865 -1.5 -1.4 sugar transferase compare
BPHYT_RS13835 -1.5 -0.8 S-adenosylhomocysteine nucleosidase compare
BPHYT_RS08525 -1.5 -1.0 SAM-dependent methyltransferase compare
BPHYT_RS08680 -1.5 -1.7 hypothetical protein compare
BPHYT_RS21025 -1.5 -0.8 cation-binding protein compare
BPHYT_RS04865 -1.5 -1.7 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
BPHYT_RS26670 -1.5 -2.6 Cobalt-precorrin-5B C(1)-methyltransferase compare
BPHYT_RS36275 -1.4 -0.9 hypothetical protein compare
BPHYT_RS32830 -1.4 -1.4 AraC family transcriptional regulator compare
BPHYT_RS11310 -1.4 -1.1 LysR family transcriptional regulator compare
BPHYT_RS31685 -1.4 -2.0 D-isomer specific 2-hydroxyacid dehydrogenase compare
BPHYT_RS11635 -1.4 -0.8 RNA polymerase subunit sigma-24 compare
BPHYT_RS23140 -1.4 -1.5 putrescine/spermidine ABC transporter permease compare
BPHYT_RS28040 -1.4 -2.5 acyl-CoA dehydrogenase compare
BPHYT_RS08335 -1.4 -1.0 hypothetical protein compare
BPHYT_RS03225 -1.4 -4.0 3-hydroxyacyl-CoA dehydrogenase compare
BPHYT_RS23475 -1.4 -1.1 luciferase compare
BPHYT_RS06910 -1.4 -3.3 membrane protein compare
BPHYT_RS14180 -1.3 -2.1 membrane protein compare
BPHYT_RS10135 -1.3 -0.9 hypothetical protein compare
BPHYT_RS18965 -1.3 -1.1 chemotaxis protein CheY compare
BPHYT_RS06765 -1.3 -2.1 glutathione S-transferase compare
BPHYT_RS08945 -1.3 -3.3 hypothetical protein compare
BPHYT_RS36480 -1.3 -1.7 hypothetical protein compare
BPHYT_RS08125 -1.3 -4.7 ATPase compare
BPHYT_RS28540 -1.3 -3.0 amino acid ABC substrate-binding protein compare
BPHYT_RS02010 -1.3 -0.8 copper homeostasis protein CutC compare
BPHYT_RS05010 -1.3 -3.0 RpiR family transcriptional regulator compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Tween 20 in Burkholderia phytofirmans PsJN

For carbon source Tween 20 across organisms