Experiment set1IT016 for Herbaspirillum seropedicae SmR1

Compare to:

Sodium succinate dibasic hexahydrate carbon source

200 most important genes:

  gene name fitness t score description  
HSERO_RS07160 -7.7 -5.1 phospho-2-dehydro-3-deoxyheptonate aldolase compare
HSERO_RS01815 -7.5 -7.3 gamma-glutamyl kinase compare
HSERO_RS15565 -7.1 -4.9 sulfate adenylyltransferase subunit 2 compare
HSERO_RS20330 -7.1 -4.9 imidazoleglycerol-phosphate dehydratase compare
HSERO_RS01935 -7.0 -5.7 3-dehydroquinate dehydratase compare
HSERO_RS20350 -6.8 -6.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
HSERO_RS16480 -6.7 -5.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
HSERO_RS17815 -6.5 -6.3 glycosyl transferase compare
HSERO_RS16500 -6.4 -4.4 3-isopropylmalate dehydrogenase compare
HSERO_RS02330 -6.4 -6.2 aspartate carbamoyltransferase compare
HSERO_RS19445 -6.4 -9.7 anthranilate phosphoribosyltransferase compare
HSERO_RS20310 -6.3 -4.5 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (from data) compare
HSERO_RS08650 -6.3 -10.7 acetolactate synthase compare
HSERO_RS17810 -6.2 -2.2 glycosyl transferase compare
HSERO_RS16515 -6.1 -10.9 isopropylmalate isomerase compare
HSERO_RS02650 -6.0 -10.0 dihydroxy-acid dehydratase compare
HSERO_RS08660 -6.0 -7.0 ketol-acid reductoisomerase compare
HSERO_RS15575 -5.8 -2.1 uroporphyrin-III C-methyltransferase compare
HSERO_RS04325 -5.8 -7.9 helicase I compare
HSERO_RS18990 -5.6 -7.4 pyrroline-5-carboxylate reductase compare
HSERO_RS19595 -5.6 -13.5 glutamate synthase compare
HSERO_RS19510 -5.6 -11.9 threonine dehydratase compare
HSERO_RS16505 -5.5 -4.3 3-isopropylmalate dehydratase small subunit compare
HSERO_RS15560 -5.5 -4.4 phosphoadenosine phosphosulfate reductase compare
HSERO_RS19435 -5.3 -8.1 anthranilate synthase subunit I compare
HSERO_RS15555 -5.3 -4.8 oxidoreductase compare
HSERO_RS02325 -5.3 -7.8 uracil phosphoribosyltransferase compare
HSERO_RS17980 -5.3 -3.6 GTP-binding protein compare
HSERO_RS20315 -5.3 -5.4 imidazole glycerol phosphate synthase compare
HSERO_RS18430 -5.2 -4.6 chorismate mutase compare
HSERO_RS19450 -5.2 -4.3 indole-3-glycerol-phosphate synthase compare
HSERO_RS20345 -5.2 -6.1 histidinol dehydrogenase compare
HSERO_RS15630 -5.2 -1.9 exodeoxyribonuclease III compare
HSERO_RS16470 -5.1 -3.9 tryptophan synthase subunit alpha compare
HSERO_RS15550 -4.9 -4.5 sulfite reductase compare
HSERO_RS17185 -4.9 -10.2 2-isopropylmalate synthase compare
HSERO_RS08405 -4.8 -2.4 membrane protein compare
HSERO_RS16475 -4.8 -2.4 tryptophan synthase subunit alpha compare
HSERO_RS02145 -4.7 -1.7 ferritin compare
HSERO_RS00455 -4.7 -10.9 homoserine O-acetyltransferase compare
HSERO_RS00800 -4.7 -6.9 hypothetical protein compare
HSERO_RS15570 -4.6 -8.3 sulfate adenylyltransferase compare
HSERO_RS15585 -4.4 -11.4 cobalamin biosynthesis protein CbiX compare
HSERO_RS20920 -4.4 -5.6 3-dehydroquinate synthase compare
HSERO_RS10805 -4.4 -2.7 succinyldiaminopimelate aminotransferase compare
HSERO_RS00795 -4.3 -4.1 glycerol-3-phosphate dehydrogenase compare
HSERO_RS09050 -4.1 -4.3 2-aminoadipate aminotransferase compare
HSERO_RS07755 -3.9 -7.3 glutamate racemase compare
HSERO_RS16885 -3.8 -2.3 magnesium-transporting ATPase compare
HSERO_RS10455 -3.8 -12.7 aminotransferase compare
HSERO_RS11070 -3.6 -8.4 nicotinate-nucleotide pyrophosphorylase compare
HSERO_RS10460 -3.6 -1.8 homoserine dehydrogenase compare
HSERO_RS20355 -3.5 -4.8 UDP-N-acetylglucosamine 1-carboxyvinyltransferase compare
HSERO_RS16440 -3.4 -3.4 O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) (from data) compare
HSERO_RS20325 -3.4 -5.2 IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data) compare
HSERO_RS05515 -3.3 -2.0 glucose-6-phosphate isomerase compare
HSERO_RS20320 -3.3 -5.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
HSERO_RS15680 -3.2 -9.2 chemotaxis protein CheY compare
HSERO_RS08655 -3.2 -3.0 acetolactate synthase compare
HSERO_RS19590 -3.1 -2.2 dihydropyrimidine dehydrogenase subunit A compare
HSERO_RS02260 -3.1 -2.6 DNA polymerase I compare
HSERO_RS13315 -3.0 -2.1 ferredoxin compare
HSERO_RS01990 -3.0 -6.9 shikimate 5-dehydrogenase compare
HSERO_RS04340 -2.9 -6.2 gamma-glutamyl ligase compare
HSERO_RS03540 -2.8 -1.9 dimethyladenosine transferase compare
HSERO_RS02160 -2.7 -1.6 DNA-dependent helicase compare
HSERO_RS04330 -2.7 -5.6 ATP-dependent exonuclease compare
HSERO_RS02090 -2.7 -1.8 Holliday junction DNA helicase RuvA compare
HSERO_RS06245 -2.6 -8.5 catalase-peroxidase compare
HSERO_RS04230 -2.6 -4.5 LuxR family transcriptional regulator compare
HSERO_RS09775 -2.6 -2.1 cobalamin synthase compare
HSERO_RS20985 -2.5 -2.1 serine acetyltransferase compare
HSERO_RS20825 -2.5 -3.3 ABC transporter permease compare
HSERO_RS13105 -2.4 -4.4 C4-dicarboxylate ABC transporter compare
HSERO_RS17110 -2.4 -5.6 ribonuclease H compare
HSERO_RS02340 -2.3 -15.4 dihydroorotase compare
HSERO_RS15685 -2.3 -9.9 histidine kinase compare
HSERO_RS03270 -2.3 -3.0 protein RecA compare
HSERO_RS17105 -2.3 -3.3 DNA polymerase III subunit epsilon compare
HSERO_RS17155 -2.2 -3.4 RNA helicase compare
HSERO_RS11085 -2.2 -6.7 L-aspartate oxidase compare
HSERO_RS04235 -2.2 -8.8 C4-dicarboxylate ABC transporter compare
HSERO_RS04335 -2.1 -2.3 sodium:proton antiporter compare
HSERO_RS19550 -2.0 -5.0 hypothetical protein compare
HSERO_RS22025 -2.0 -5.1 aromatic amino acid aminotransferase compare
HSERO_RS05910 -1.9 -2.1 phosphoribosylglycinamide formyltransferase compare
HSERO_RS11065 -1.9 -1.9 quinolinate synthetase compare
HSERO_RS13265 -1.8 -4.0 G3E family GTPase compare
HSERO_RS09155 -1.8 -7.3 DNA topoisomerase IV subunit B compare
HSERO_RS02205 -1.7 -2.2 phosphatase compare
HSERO_RS19630 -1.7 -1.3 AMP nucleosidase compare
HSERO_RS13305 -1.7 -5.4 magnesium chelatase compare
HSERO_RS18425 -1.7 -1.5 prephenate dehydrogenase compare
HSERO_RS13260 -1.7 -3.1 cobinamide adenolsyltransferase compare
HSERO_RS09290 -1.7 -4.1 ribonuclease R compare
HSERO_RS21475 -1.6 -2.6 recombinase XerC compare
HSERO_RS13240 -1.6 -5.2 cobalamin biosynthesis protein CobD compare
HSERO_RS19815 -1.6 -4.4 phytanoyl-CoA dioxygenase compare
HSERO_RS14765 -1.6 -2.0 membrane protein compare
HSERO_RS13960 -1.5 -3.4 hypothetical protein compare
HSERO_RS03450 -1.5 -2.0 energy transducer protein TonB compare
HSERO_RS04265 -1.5 -2.2 tyrosine recombinase XerD compare
HSERO_RS10815 -1.5 -3.7 chromosome segregation protein SMC compare
HSERO_RS16825 -1.5 -2.4 NADP-dependent malic enzyme oxidoreductase compare
HSERO_RS09770 -1.5 -4.4 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
HSERO_RS09055 -1.4 -2.2 hypothetical protein compare
HSERO_RS10395 -1.4 -2.5 phosphate transport regulator compare
HSERO_RS13285 -1.4 -1.2 precorrin-2 C20-methyltransferase compare
HSERO_RS07385 -1.4 -1.2 hypothetical protein compare
HSERO_RS06165 -1.4 -5.7 ATP-dependent DNA helicase RecG compare
HSERO_RS22440 -1.4 -2.3 hypothetical protein compare
HSERO_RS14960 -1.4 -2.6 Fis family transcriptional regulator compare
HSERO_RS07970 -1.4 -2.0 formyltetrahydrofolate deformylase compare
HSERO_RS02215 -1.3 -1.3 D-arabinitol 4-dehydrogenase compare
HSERO_RS10400 -1.3 -5.8 inorganic phosphate transporter compare
HSERO_RS18010 -1.3 -2.5 pseudouridine synthase compare
HSERO_RS20795 -1.3 -2.6 membrane protein compare
HSERO_RS21345 -1.3 -2.4 cell division inhibitor MinD compare
HSERO_RS15635 -1.3 -2.6 hypothetical protein compare
HSERO_RS13275 -1.3 -1.5 cobalamin biosynthesis protein CbiG compare
HSERO_RS13235 -1.3 -5.0 threonine-phosphate decarboxylase compare
HSERO_RS20600 -1.3 -4.6 transcription regulator protein compare
HSERO_RS06370 -1.2 -2.3 aromatic compound catabolic protein compare
HSERO_RS01255 -1.2 -6.6 acyl-CoA dehydrogenase compare
HSERO_RS13295 -1.2 -4.2 membrane protein compare
HSERO_RS04860 -1.2 -1.2 sugar ABC transporter permease compare
HSERO_RS09415 -1.2 -3.5 ribosomal large subunit pseudouridine synthase C compare
HSERO_RS09235 -1.2 -0.9 MarR family transcriptional regulator compare
HSERO_RS09670 -1.2 -2.4 DNA repair protein RecO compare
HSERO_RS18600 -1.2 -1.5 transcriptional regulator compare
HSERO_RS03670 -1.2 -3.9 hypothetical protein compare
HSERO_RS07600 -1.2 -4.6 threonine-phosphate decarboxylase compare
HSERO_RS19835 -1.2 -1.6 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
HSERO_RS20370 -1.2 -2.8 ABC transporter ATP-binding protein compare
HSERO_RS20820 -1.2 -1.1 ABC transporter ATP-binding protein compare
HSERO_RS10865 -1.2 -3.8 PII uridylyl-transferase compare
HSERO_RS05920 -1.1 -3.2 endonuclease compare
HSERO_RS07140 -1.1 -2.2 glutamine-synthetase adenylyltransferase compare
HSERO_RS01095 -1.1 -3.3 hypothetical protein compare
HSERO_RS14840 -1.1 -2.4 protein-L-isoaspartate O-methyltransferase compare
HSERO_RS09145 -1.1 -1.8 DNA topoisomerase IV subunit A compare
HSERO_RS13965 -1.1 -2.4 single-stranded DNA exonuclease compare
HSERO_RS08935 -1.1 -1.4 transcriptional regulator compare
HSERO_RS13270 -1.1 -3.7 bifunctional precorrin-3 methyltransferase/precorrin-6x reductase oxidoreductase compare
HSERO_RS22415 -1.1 -2.2 hypothetical protein compare
HSERO_RS01785 -1.1 -2.0 hypothetical protein compare
HSERO_RS12995 -1.0 -2.1 DNAase compare
HSERO_RS11435 -1.0 -3.2 IclR family transcriptional regulator compare
HSERO_RS21955 -1.0 -3.9 hypothetical protein compare
HSERO_RS22175 -1.0 -1.1 hypothetical protein compare
HSERO_RS13880 -1.0 -1.2 hypothetical protein compare
HSERO_RS10720 -1.0 -2.3 alanine acetyltransferase compare
HSERO_RS11595 -1.0 -1.5 ArsR family transcriptional regulator compare
HSERO_RS04225 -1.0 -3.4 permease compare
HSERO_RS17345 -1.0 -3.3 AsnC family transcriptional regulator compare
HSERO_RS14950 -1.0 -2.2 purine-binding chemotaxis protein compare
HSERO_RS22845 -1.0 -3.7 LysR family transcriptional regulator compare
HSERO_RS02315 -1.0 -2.2 transcriptional regulator compare
HSERO_RS06530 -1.0 -1.1 muconolactone delta-isomerase compare
HSERO_RS08515 -1.0 -2.5 diguanylate cyclase compare
HSERO_RS03445 -1.0 -4.5 biopolymer transport transmembrane protein compare
HSERO_RS19185 -1.0 -2.5 phosphomethylpyrimidine kinase compare
HSERO_RS12795 -1.0 -1.1 hypothetical protein compare
HSERO_RS16420 -1.0 -2.6 phosphoesterase compare
HSERO_RS15780 -1.0 -1.9 GntR family transcriptional regulator compare
HSERO_RS15665 -0.9 -1.1 propionate catabolism operon regulatory protein PrpR compare
HSERO_RS02720 -0.9 -3.3 IclR family transcriptional regulator compare
HSERO_RS18525 -0.9 -2.6 hypothetical protein compare
HSERO_RS15005 -0.9 -1.1 ribosomal protein S12 methylthiotransferase compare
HSERO_RS20365 -0.9 -1.2 metal-dependent hydrolase compare
HSERO_RS09650 -0.9 -1.7 elongation factor 4 compare
HSERO_RS18015 -0.9 -2.8 transcriptional regulator compare
HSERO_RS21745 -0.9 -1.8 5'-methylthioadenosine nucleosidase compare
HSERO_RS07470 -0.9 -1.1 ketosteroid isomerase compare
HSERO_RS22095 -0.9 -1.4 hypothetical protein compare
HSERO_RS09660 -0.9 -1.6 ribonuclease III compare
HSERO_RS03275 -0.9 -4.6 regulatory protein RecX compare
HSERO_RS03865 -0.9 -2.1 hypothetical protein compare
HSERO_RS06170 -0.9 -1.7 S-adenosylmethionine tRNA ribosyltransferase compare
HSERO_RS16450 -0.9 -1.0 colicin V production protein compare
HSERO_RS21430 -0.9 -1.9 membrane protein compare
HSERO_RS20835 -0.9 -2.1 ABC transporter substrate-binding protein compare
HSERO_RS02785 -0.9 -1.2 hypothetical protein compare
HSERO_RS12435 -0.9 -2.6 dioxygenase compare
HSERO_RS01460 -0.9 -1.5 transcriptional regulator compare
HSERO_RS08115 -0.9 -1.1 acyl-CoA-binding protein compare
HSERO_RS13310 -0.9 -3.2 cobaltochelatase compare
HSERO_RS21740 -0.9 -4.6 methionine synthase compare
HSERO_RS11105 -0.8 -0.9 beta-lactamase compare
HSERO_RS10340 -0.8 -2.1 flagellar biosynthesis protein FliS compare
HSERO_RS03910 -0.8 -1.6 hypothetical protein compare
HSERO_RS12630 -0.8 -2.0 chemotaxis protein CheY compare
HSERO_RS13230 -0.8 -1.0 cobyric acid synthase compare
HSERO_RS01870 -0.8 -3.0 ABC transporter permease compare
HSERO_RS10230 -0.8 -2.2 flagellar hook-filament junction protein compare
HSERO_RS05040 -0.8 -1.3 (2Fe-2S)-binding protein compare
HSERO_RS21340 -0.8 -1.4 septum formation inhibitor protein compare
HSERO_RS11345 -0.8 -1.3 hypothetical protein compare
HSERO_RS09910 -0.8 -1.5 integration host factor subunit alpha compare
HSERO_RS03145 -0.8 -3.0 poly(A) polymerase compare


Specific Phenotypes

None in this experiment

For Herbaspirillum seropedicae SmR1 in carbon source experiments

For carbon source Sodium succinate dibasic hexahydrate across organisms