Experiment set1IT015 for Pseudomonas syringae pv. syringae B728a

Compare to:

KB with Berberine 250 ug/ml

200 most important genes:

  gene name fitness t score description  
Psyr_0541 -4.6 -3.2 Small multidrug resistance protein compare
Psyr_0014 -4.2 -2.9 lipid A biosynthesis acyltransferase compare
Psyr_1614 -4.1 -2.8 lipid A biosynthesis acyltransferase compare
Psyr_4009 -4.1 -7.4 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_1544 -3.9 -3.8 SirA-like protein compare
Psyr_4740 -3.8 -6.3 thiazole-phosphate synthase compare
Psyr_0951 -3.5 -3.9 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_2282 -3.4 -13.2 Hydrophobe/amphiphile efflux-1 HAE1 conserved
Psyr_4340 -3.2 -8.0 phosphomethylpyrimidine kinase, putative compare
Psyr_3008 -3.0 -6.8 Undecaprenyl-diphosphatase compare
Psyr_4566 -2.9 -9.7 Peptidase M23B compare
Psyr_4686 -2.8 -5.6 8-amino-7-oxononanoate synthase compare
Psyr_1268 -2.8 -7.3 extracellular solute-binding protein, family 3:SLT compare
Psyr_4007 -2.5 -10.8 Secretion protein HlyD compare
Psyr_4683 -2.4 -4.5 dethiobiotin synthase compare
Psyr_4008 -2.4 -15.7 Hydrophobe/amphiphile efflux-1 HAE1 compare
Psyr_4687 -2.3 -6.6 biotin synthase compare
Psyr_4158 -2.3 -7.9 conserved hypothetical protein compare
Psyr_4341 -2.3 -7.5 thiamine-phosphate diphosphorylase compare
Psyr_4091 -2.2 -5.8 8-oxo-dGTPase compare
Psyr_2283 -2.2 -6.4 Secretion protein HlyD conserved
Psyr_0255 -2.0 -2.5 glutamate-cysteine ligase compare
Psyr_4819 -1.9 -8.1 conserved hypothetical protein compare
Psyr_0524 -1.8 -4.2 Lipopolysaccharide kinase compare
Psyr_1410 -1.8 -4.7 Holliday junction DNA helicase RuvB compare
Psyr_5133 -1.7 -3.2 tRNA modification GTPase trmE compare
Psyr_0575 -1.7 -3.6 protease FtsH subunit HflC compare
Psyr_4627 -1.6 -2.5 dimethyladenosine transferase compare
Psyr_4684 -1.6 -2.8 biotin synthesis protein BioC compare
Psyr_4884 -1.6 -4.7 Rhodanese-like protein compare
Psyr_5132 -1.6 -3.0 Glucose-inhibited division protein A subfamily compare
Psyr_4786 -1.6 -2.1 hypothetical protein compare
Psyr_0849 -1.5 -8.8 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_4144 -1.5 -1.6 Protein of unknown function DUF1239 compare
Psyr_0454 -1.5 -4.2 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_1138 -1.5 -2.5 GCN5-related N-acetyltransferase compare
Psyr_3640 -1.5 -2.4 conserved hypothetical protein compare
Psyr_4140 -1.4 -2.6 Protein of unknown function DUF140 compare
Psyr_2973 -1.4 -2.3 Glyoxalase I compare
Psyr_2557 -1.3 -2.5 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase-like protein compare
Psyr_4161 -1.3 -2.0 Rod shape-determining protein MreD compare
Psyr_2468 -1.3 -3.7 Enoyl-CoA hydratase/isomerase compare
Psyr_2249 -1.3 -3.3 Binding-protein-dependent transport systems inner membrane component compare
Psyr_4203 -1.2 -1.7 SsrA-binding protein compare
Psyr_1378 -1.2 -1.9 RecA protein compare
Psyr_1424 -1.2 -2.1 Peptidase S24, S26A and S26B compare
Psyr_0574 -1.2 -3.8 protease FtsH subunit HflK compare
Psyr_0917 -1.2 -6.1 ABC-2 compare
Psyr_1975 -1.2 -3.1 Integrase, catalytic region compare
Psyr_4598 -1.1 -2.2 lipoprotein, putative compare
Psyr_0571 -1.1 -2.7 tRNA isopentenyltransferase compare
Psyr_0528 -1.1 -2.0 Carbamoyltransferase compare
Psyr_2471 -1.1 -1.6 hydroxymethylglutaryl-CoA lyase compare
Psyr_0201 -1.1 -5.6 ATP-dependent DNA helicase RecG compare
Psyr_3681 -1.1 -2.0 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
Psyr_1543 -1.1 -5.8 Peptidase M48, Ste24p compare
Psyr_2823 -1.1 -2.0 hypothetical protein compare
Psyr_3198 -1.1 -1.9 NADH dehydrogenase subunit B compare
Psyr_1762 -1.1 -6.6 conserved hypothetical protein compare
Psyr_3419 -1.1 -3.5 4Fe-4S ferredoxin, iron-sulfur binding protein compare
Psyr_3886 -1.1 -1.5 methionyl-tRNA synthetase compare
Psyr_4618 -1.1 -2.2 regulatory protein, LuxR:Response regulator receiver compare
Psyr_1733 -1.1 -2.3 Peptidyl-prolyl cis-trans isomerase, cyclophilin type compare
Psyr_1751 -1.1 -3.5 PpiC-type peptidyl-prolyl cis-trans isomerase compare
Psyr_1717 -1.0 -2.2 TPR repeat:von Willebrand factor, type A compare
Psyr_2855 -1.0 -3.4 methionine synthase (B12-independent) compare
Psyr_0215 -1.0 -6.2 Exodeoxyribonuclease III xth compare
Psyr_1222 -1.0 -2.0 CDS compare
Psyr_0550 -1.0 -3.3 Protein of unknown function UPF0227 compare
Psyr_1630 -1.0 -3.3 ABC transporter compare
Psyr_1955 -1.0 -2.0 Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix compare
Psyr_2134 -1.0 -2.3 protein of unknown function DUF903 compare
Psyr_3425 -1.0 -2.4 Cyclic nucleotide-binding:Bacterial regulatory protein, Crp compare
Psyr_0918 -1.0 -6.0 ABC transporter compare
Psyr_4512 -1.0 -3.7 putative phage-related protein compare
Psyr_1972 -1.0 -2.4 conserved hypothetical protein compare
Psyr_0081 -1.0 -1.6 ABC transporter compare
Psyr_4940 -1.0 -0.9 3'(2'),5'-bisphosphate nucleotidase compare
Psyr_4089 -1.0 -3.7 PAS compare
Psyr_1933 -1.0 -1.9 hypothetical protein compare
Psyr_3674 -1.0 -2.0 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase compare
Psyr_4178 -0.9 -4.5 tRNA pseudouridine synthase B compare
Psyr_0511 -0.9 -2.8 conserved hypothetical protein compare
Psyr_0234 -0.9 -5.7 transcriptional regulator, AsnC family compare
Psyr_3739 -0.9 -1.3 conserved hypothetical protein compare
Psyr_4408 -0.9 -4.7 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_4586 -0.9 -2.5 tail protein, putative compare
Psyr_1949 -0.9 -2.7 ABC-3 compare
Psyr_0565 -0.9 -3.9 Protein of unknown function UPF0126 compare
Psyr_4887 -0.9 -5.6 Peptidase S41A, C-terminal protease compare
Psyr_1962 -0.9 -5.1 TonB-dependent siderophore receptor compare
Psyr_1418 -0.9 -2.1 Radical SAM compare
Psyr_3692 -0.9 -1.3 conserved hypothetical protein compare
Psyr_1613 -0.9 -2.7 septum site-determining protein MinC compare
Psyr_3005 -0.9 -1.8 3-oxoadipate enol-lactonase compare
Psyr_1408 -0.9 -1.9 Holliday junction endonuclease RuvC compare
Psyr_1379 -0.9 -1.3 Regulatory protein RecX compare
Psyr_4118 -0.9 -4.2 Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal compare
Psyr_3673 -0.9 -1.5 Phosphoglycerate/bisphosphoglycerate mutase compare
Psyr_4991 -0.9 -1.5 hypothetical protein compare
Psyr_3854 -0.9 -1.1 OmpA/MotB compare
Psyr_3255 -0.9 -2.1 multisubunit potassium/proton antiporter, PhaE subunit compare
Psyr_2190 -0.9 -1.1 NADH:flavin oxidoreductase/NADH oxidase compare
Psyr_3176 -0.9 -2.6 camphor resistance protein CrcB compare
Psyr_0845 -0.9 -1.6 conserved hypothetical protein compare
Psyr_1979 -0.9 -4.1 tRNA-U20a,U20b-dihydrouridine synthase compare
Psyr_1371 -0.9 -4.0 5'-nucleotidase / exopolyphosphatase / 3'-nucleotidase compare
Psyr_1389 -0.8 -2.2 Protein of unknown function DUF1456 compare
Psyr_4581 -0.8 -2.1 anthranilate synthase, component II compare
Psyr_3857 -0.8 -2.4 conserved hypothetical protein compare
Psyr_3597 -0.8 -1.1 ABC transporter compare
Psyr_2755 -0.8 -2.6 2-nitropropane dioxygenase, NPD compare
Psyr_2088 -0.8 -1.3 2-methylaconitate cis-trans isomerase compare
Psyr_4577 -0.8 -2.7 Cyclic nucleotide-binding:Bacterial regulatory protein, Crp compare
Psyr_3311 -0.8 -2.2 Virulence factor MVIN-like protein compare
Psyr_0680 -0.8 -2.5 DNA helicase/exodeoxyribonuclease V, gamma subunit compare
Psyr_3262 -0.8 -1.4 dnaK suppressor protein, putative compare
Psyr_3226 -0.8 -2.5 Transcriptional activator RfaH compare
Psyr_1965 -0.8 -3.3 Twin-arginine translocation pathway signal compare
Psyr_2894 -0.8 -1.5 conserved hypothetical protein compare
Psyr_2540 -0.8 -1.6 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_4464 -0.8 -1.1 lipoprotein, putative compare
Psyr_3000 -0.8 -1.1 methyltransferase, putative compare
Psyr_1251 -0.8 -2.1 quinoprotein compare
Psyr_1907 -0.8 -1.6 GTP cyclohydrolase I compare
Psyr_4019 -0.8 -2.6 H-NS family protein MvaT compare
Psyr_1687 -0.8 -2.6 Rhomboid-like protein compare
Psyr_2977 -0.8 -2.1 cointegrate resolution protein T compare
Psyr_2588 -0.8 -1.4 HpcH/HpaI aldolase compare
Psyr_1937 -0.7 -1.6 UspA compare
Psyr_3224 -0.7 -2.3 Low molecular weight phosphotyrosine protein phosphatase compare
Psyr_3723 -0.7 -1.9 CDS compare
Psyr_3954 -0.7 -2.7 GTP-binding protein LepA compare
Psyr_1097 -0.7 -1.2 glycine cleavage system H protein compare
Psyr_4601 -0.7 -1.8 hypothetical protein compare
Psyr_5043 -0.7 -3.0 Thioesterase superfamily compare
Psyr_4583 -0.7 -3.2 Glycoside hydrolase, family 19 compare
Psyr_1991 -0.7 -3.4 transcriptional regulator, IclR family compare
Psyr_2641 -0.7 -2.3 hypothetical protein compare
Psyr_2362 -0.7 -2.1 Silent information regulator protein Sir2 compare
Psyr_1951 -0.7 -3.1 Periplasmic solute binding protein compare
Psyr_1939 -0.7 -3.6 PAS compare
Psyr_1330 -0.7 -2.9 23S rRNA m(1)G-745 methyltransferase compare
Psyr_2419 -0.7 -2.6 Protein of unknown function DUF480 compare
Psyr_2448 -0.7 -3.1 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal compare
Psyr_1795 -0.7 -2.7 Taurine dioxygenase compare
Psyr_0998 -0.7 -2.3 Isochorismatase hydrolase compare
Psyr_4422 -0.7 -4.1 Protein of unknown function DUF461 compare
Psyr_1931 -0.7 -2.9 hypothetical protein compare
Psyr_0276 -0.7 -1.8 zinc uptake regulation protein, putative compare
Psyr_3275 -0.7 -3.9 Helix-turn-helix protein RpiR:Sugar isomerase (SIS) compare
Psyr_0444 -0.7 -0.9 Malonate decarboxylase delta subunit compare
Psyr_4115 -0.7 -1.3 phosphoheptose isomerase compare
Psyr_1103 -0.7 -2.9 Protein of unknown function DUF454 compare
Psyr_1264 -0.7 -1.8 hypothetical protein compare
Psyr_2485 -0.7 -3.6 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_1120 -0.7 -3.7 glucose-6-phosphate 1-dehydrogenase compare
Psyr_3672 -0.7 -1.4 cobalamin-5'-phosphate synthase compare
Psyr_0479 -0.7 -1.5 NLP/P60 compare
Psyr_0235 -0.7 -3.7 D-amino acid dehydrogenase small subunit compare
Psyr_2405 -0.6 -3.0 transcriptional regulator, GntR family compare
Psyr_3545 -0.6 -2.1 Short-chain dehydrogenase/reductase SDR compare
Psyr_4386 -0.6 -2.2 conserved hypothetical protein compare
Psyr_1903 -0.6 -0.9 conserved hypothetical protein compare
Psyr_3184 -0.6 -1.7 ATP-dependent Clp protease adaptor protein ClpS compare
Psyr_2095 -0.6 -2.5 Conserved TM helix compare
Psyr_4942 -0.6 -1.4 HAD-superfamily hydrolase, subfamily IA, variant 3 compare
Psyr_3947 -0.6 -1.3 Methyltransferase, putative compare
Psyr_1935 -0.6 -2.4 Protein of unknown function DUF796 compare
Psyr_3191 -0.6 -2.1 Protein of unknown function DUF489 compare
Psyr_4424 -0.6 -3.1 Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix compare
Psyr_0239 -0.6 -1.5 cytochrome c5 compare
Psyr_2107 -0.6 -2.1 Ribosome modulation factor compare
Psyr_4220 -0.6 -2.7 GCN5-related N-acetyltransferase compare
Psyr_3181 -0.6 -2.1 Arginyltransferase compare
Psyr_3164 -0.6 -3.8 Protein of unknown function UPF0005 compare
Psyr_1963 -0.6 -2.7 Cyclic peptide transporter compare
Psyr_3199 -0.6 -1.3 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_3665 -0.6 -1.4 conserved hypothetical protein compare
Psyr_1329 -0.6 -2.1 conserved hypothetical protein compare
Psyr_0202 -0.6 -4.1 transcriptional regulator, LysR family compare
Psyr_4658 -0.6 -1.8 CDS compare
Psyr_1584 -0.6 -3.7 Aspartyl/Asparaginyl beta-hydroxylase compare
Psyr_1078 -0.6 -2.7 Protein of unknown function DUF24 compare
Psyr_3571 -0.6 -2.6 L-arginine-binding protein / L-ornithine-binding protein compare
Psyr_4044 -0.6 -2.1 Phospholipase D/Transphosphatidylase compare
Psyr_0044 -0.6 -0.9 transferase hexapeptide repeat protein compare
Psyr_4916 -0.6 -2.2 conserved hypothetical protein compare
Psyr_1974 -0.6 -3.5 Excinuclease ABC subunit B compare
Psyr_0291 -0.6 -2.6 DedA compare
Psyr_3652 -0.6 -2.0 Short-chain dehydrogenase/reductase SDR compare
Psyr_4136 -0.6 -1.1 BolA-like protein compare
Psyr_2461 -0.6 -1.9 Uncharacterized conserved protein UCP030820 compare
Psyr_2254 -0.6 -2.4 Phosphonate metabolism PhnJ compare
Psyr_0293 -0.6 -4.5 Polyphosphate kinase compare
Psyr_2872 -0.6 -1.4 hypothetical protein compare
Psyr_3377 -0.6 -1.6 transcriptional regulator, MarR family compare
Psyr_0264 -0.6 -2.6 Alginate biosynthesis sensor protein KinB compare
Psyr_1599 -0.6 -4.2 C-terminal processing peptidase-1, Serine peptidase, MEROPS family S41A compare
Psyr_4593 -0.6 -1.5 sigma factor domain protein compare


Specific Phenotypes

For 3 genes in this experiment

For stress Berberine in Pseudomonas syringae pv. syringae B728a

For stress Berberine across organisms