Experiment set1IT015 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

R2A with Cisplatin 0.005 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS14825 +1.0 3.0 outer membrane protein assembly factor BamD compare
CA265_RS02795 +0.8 1.9 hypothetical protein compare
CA265_RS14640 +0.8 1.1 UDP-glucose 4-epimerase compare
CA265_RS12780 +0.7 1.5 hypothetical protein compare
CA265_RS24385 +0.7 2.2 GNAT family N-acetyltransferase compare
CA265_RS21525 +0.7 3.2 hypothetical protein compare
CA265_RS19610 +0.7 2.6 hypothetical protein compare
CA265_RS25000 +0.6 3.5 hypothetical protein compare
CA265_RS10540 +0.6 1.9 dinitrogenase iron-molybdenum cofactor biosynthesis protein compare
CA265_RS10845 +0.6 3.4 hypothetical protein compare
CA265_RS25395 +0.6 3.4 cysteine hydrolase compare
CA265_RS04885 +0.6 1.2 tRNA-Gly compare
CA265_RS06930 +0.5 2.0 hypothetical protein compare
CA265_RS14440 +0.5 1.8 transcriptional regulator compare
CA265_RS16105 +0.5 1.1 hypothetical protein compare
CA265_RS03530 +0.5 2.1 hypothetical protein compare
CA265_RS20350 +0.5 2.4 gliding motility lipoprotein GldH compare
CA265_RS17025 +0.5 1.3 hypothetical protein compare
CA265_RS12745 +0.5 2.4 NUDIX hydrolase compare
CA265_RS16130 +0.4 1.5 cell division protein FtsX compare
CA265_RS24605 +0.4 1.0 hypothetical protein compare
CA265_RS19620 +0.4 2.1 hypothetical protein compare
CA265_RS00025 +0.4 1.1 hypothetical protein compare
CA265_RS12505 +0.4 1.8 hypothetical protein compare
CA265_RS05165 +0.4 2.8 hypothetical protein compare
CA265_RS06365 +0.4 3.1 hypothetical protein compare
CA265_RS19740 +0.4 1.8 gliding motility lipoprotein GldD compare
CA265_RS19345 +0.4 3.0 hypothetical protein compare
CA265_RS18275 +0.4 1.3 pyrophosphatase compare
CA265_RS12280 +0.4 1.1 hypothetical protein compare
CA265_RS20240 +0.4 2.0 hypothetical protein compare
CA265_RS23305 +0.4 0.7 hypothetical protein compare
CA265_RS24360 +0.4 1.9 ATPase compare
CA265_RS09335 +0.4 2.0 DUF4442 domain-containing protein compare
CA265_RS19955 +0.4 0.8 hypothetical protein compare
CA265_RS18465 +0.4 2.0 RNA-splicing ligase RtcB compare
CA265_RS15815 +0.4 1.3 glyoxalase/bleomycin resistance/extradiol dioxygenase family protein compare
CA265_RS25150 +0.4 1.5 hypothetical protein compare
CA265_RS05940 +0.4 1.5 hypothetical protein compare
CA265_RS10400 +0.4 2.0 histone H1 compare
CA265_RS20785 +0.4 1.2 hypothetical protein compare
CA265_RS22310 +0.4 1.7 superoxide dismutase compare
CA265_RS18805 +0.4 0.9 hypothetical protein compare
CA265_RS20095 +0.3 1.5 NADH oxidase compare
CA265_RS16295 +0.3 2.1 LacI family transcriptional regulator compare
CA265_RS03835 +0.3 1.1 hypothetical protein compare
CA265_RS24620 +0.3 2.5 response regulator compare
CA265_RS16505 +0.3 2.2 purine-nucleoside phosphorylase compare
CA265_RS15880 +0.3 1.7 sugar ABC transporter ATP-binding protein compare
CA265_RS08195 +0.3 1.8 hypothetical protein compare
CA265_RS19945 +0.3 2.2 hypothetical protein compare
CA265_RS20880 +0.3 1.9 hypothetical protein compare
CA265_RS23755 +0.3 2.2 lauroyl acyltransferase compare
CA265_RS19615 +0.3 1.6 metal-dependent hydrolase compare
CA265_RS21760 +0.3 1.4 hypothetical protein compare
CA265_RS06170 +0.3 1.6 hypothetical protein compare
CA265_RS00265 +0.3 1.4 RNA polymerase sigma-70 factor compare
CA265_RS22725 +0.3 2.2 hypothetical protein compare
CA265_RS10385 +0.3 1.0 hypothetical protein compare
CA265_RS25305 +0.3 1.7 hypothetical protein compare
CA265_RS04245 +0.3 0.9 hypothetical protein compare
CA265_RS04510 +0.3 1.7 hypothetical protein compare
CA265_RS19605 +0.3 2.0 serine hydrolase compare
CA265_RS18775 +0.3 1.6 hypothetical protein compare
CA265_RS10430 +0.3 1.8 hypothetical protein compare
CA265_RS23545 +0.3 0.7 NADH dehydrogenase subunit D compare
CA265_RS12775 +0.3 2.7 ATP-dependent chaperone ClpB compare
CA265_RS09555 +0.3 1.4 phage envelope protein compare
CA265_RS10205 +0.3 1.3 hypothetical protein compare
CA265_RS21115 +0.3 1.6 hypothetical protein compare
CA265_RS07700 +0.3 1.6 hypothetical protein compare
CA265_RS14585 +0.3 2.2 hypothetical protein compare
CA265_RS20620 +0.3 1.9 hypothetical protein compare
CA265_RS22805 +0.3 2.1 glycosyl transferase compare
CA265_RS16785 +0.3 0.7 50S ribosomal protein L17 compare
CA265_RS17375 +0.3 1.6 hypothetical protein compare
CA265_RS23905 +0.3 1.9 hypothetical protein compare
CA265_RS10915 +0.3 1.8 hypothetical protein compare
CA265_RS18120 +0.3 2.4 gliding motility protein GldM compare
CA265_RS15865 +0.3 1.1 cupin compare
CA265_RS16950 +0.3 1.8 hypothetical protein compare
CA265_RS05570 +0.3 1.7 hypothetical protein compare
CA265_RS11095 +0.3 1.8 hypothetical protein compare
CA265_RS20035 +0.3 1.5 DNA alkylation repair protein compare
CA265_RS03180 +0.3 1.0 hypothetical protein compare
CA265_RS19645 +0.3 2.0 GNAT family N-acetyltransferase compare
CA265_RS12960 +0.3 1.7 DUF4440 domain-containing protein compare
CA265_RS07655 +0.3 1.6 hypothetical protein compare
CA265_RS18810 +0.3 1.6 thioredoxin family protein compare
CA265_RS03385 +0.3 1.4 hypothetical protein compare
CA265_RS16305 +0.3 1.2 stationary phase survival protein SurE compare
CA265_RS10905 +0.3 1.4 iron-dependent repressor compare
CA265_RS17095 +0.3 1.5 SAM-dependent methyltransferase compare
CA265_RS18115 +0.3 1.9 gliding motility protein GldN compare
CA265_RS21320 +0.3 1.0 hypothetical protein compare
CA265_RS07120 +0.3 1.6 glutathione peroxidase compare
CA265_RS11585 +0.3 1.6 hypothetical protein compare
CA265_RS12535 +0.3 2.1 RNA polymerase compare
CA265_RS01350 +0.3 2.1 transcriptional regulator compare
CA265_RS18945 +0.3 1.6 LacI family transcriptional regulator compare
CA265_RS21600 +0.3 1.8 hypothetical protein compare
CA265_RS08720 +0.3 1.9 hypothetical protein compare
CA265_RS21420 +0.3 1.4 hypothetical protein compare
CA265_RS21260 +0.3 2.2 hypothetical protein compare
CA265_RS06925 +0.3 1.6 hypothetical protein compare
CA265_RS05960 +0.3 1.8 short-chain dehydrogenase compare
CA265_RS13395 +0.3 2.3 hypothetical protein compare
CA265_RS19465 +0.3 1.1 protein tyrosine phosphatase compare
CA265_RS08745 +0.3 1.8 STAS/SEC14 domain-containing protein compare
CA265_RS12075 +0.3 1.3 hypothetical protein compare
CA265_RS09075 +0.3 1.6 hypothetical protein compare
CA265_RS24910 +0.3 1.2 GNAT family N-acetyltransferase compare
CA265_RS11925 +0.3 1.1 hypothetical protein compare
CA265_RS04315 +0.3 1.8 hypothetical protein compare
CA265_RS24770 +0.3 0.9 hypothetical protein compare
CA265_RS19765 +0.3 1.2 hypothetical protein compare
CA265_RS03595 +0.3 1.3 hydrolase compare
CA265_RS13485 +0.3 0.7 hypothetical protein compare
CA265_RS21460 +0.3 1.4 5-formyltetrahydrofolate cyclo-ligase compare
CA265_RS10695 +0.3 0.7 hypothetical protein compare
CA265_RS08135 +0.3 1.6 amidohydrolase compare
CA265_RS17470 +0.3 2.0 hypothetical protein compare
CA265_RS14260 +0.3 1.2 restriction endonuclease subunit R compare
CA265_RS16630 +0.3 1.9 hypothetical protein compare
CA265_RS08785 +0.3 0.7 hypothetical protein compare
CA265_RS14125 +0.3 0.8 hypothetical protein compare
CA265_RS04865 +0.3 1.0 DUF4440 domain-containing protein compare
CA265_RS16940 +0.3 1.3 plasmid stabilization system protein compare
CA265_RS23140 +0.3 0.9 hypothetical protein compare
CA265_RS09915 +0.3 1.8 short-chain dehydrogenase/reductase compare
CA265_RS19790 +0.3 2.0 DUF4153 domain-containing protein compare
CA265_RS10125 +0.3 1.7 hypothetical protein compare
CA265_RS04295 +0.3 0.7 transcriptional regulator compare
CA265_RS02945 +0.3 1.1 hypothetical protein compare
CA265_RS15085 +0.3 1.7 hypothetical protein compare
CA265_RS16070 +0.3 1.8 peptide-N-glycosidase compare
CA265_RS10615 +0.3 1.4 diacylglycerol kinase compare
CA265_RS23320 +0.3 1.7 AraC family transcriptional regulator compare
CA265_RS18125 +0.3 1.7 gliding motility protein GldL compare
CA265_RS03815 +0.3 1.3 AraC family transcriptional regulator compare
CA265_RS17785 +0.3 1.2 hypothetical protein compare
CA265_RS20220 +0.3 1.7 hypothetical protein compare
CA265_RS24815 +0.2 0.7 hypothetical protein compare
CA265_RS23525 +0.2 1.6 hypothetical protein compare
CA265_RS21750 +0.2 0.6 hypothetical protein compare
CA265_RS21555 +0.2 1.0 hypothetical protein compare
CA265_RS15270 +0.2 1.5 hypothetical protein compare
CA265_RS23120 +0.2 0.8 hypothetical protein compare
CA265_RS09120 +0.2 1.7 hypothetical protein compare
CA265_RS01835 +0.2 1.4 hypothetical protein compare
CA265_RS17040 +0.2 1.3 hypothetical protein compare
CA265_RS01100 +0.2 1.3 transcriptional regulator compare
CA265_RS01565 +0.2 0.6 circadian clock protein KaiB compare
CA265_RS21030 +0.2 1.5 hypothetical protein compare
CA265_RS02750 +0.2 1.3 hypothetical protein compare
CA265_RS18160 +0.2 1.7 short chain dehydrogenase compare
CA265_RS17555 +0.2 1.8 hypothetical protein compare
CA265_RS08815 +0.2 1.7 hypothetical protein compare
CA265_RS17915 +0.2 1.0 hypothetical protein compare
CA265_RS19535 +0.2 1.5 hypothetical protein compare
CA265_RS02310 +0.2 1.6 hypothetical protein compare
CA265_RS04705 +0.2 1.1 hypothetical protein compare
CA265_RS01225 +0.2 1.2 hypothetical protein compare
CA265_RS24965 +0.2 1.3 hypothetical protein compare
CA265_RS16560 +0.2 1.1 hypothetical protein compare
CA265_RS17935 +0.2 1.3 hypothetical protein compare
CA265_RS08470 +0.2 1.7 sialate O-acetylesterase compare
CA265_RS13020 +0.2 1.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
CA265_RS18845 +0.2 1.1 GNAT family N-acetyltransferase compare
CA265_RS20040 +0.2 1.3 GNAT family N-acetyltransferase compare
CA265_RS03155 +0.2 1.4 hypothetical protein compare
CA265_RS14095 +0.2 2.1 hypothetical protein compare
CA265_RS17090 +0.2 0.8 DUF2132 domain-containing protein compare
CA265_RS06240 +0.2 1.2 hypothetical protein compare
CA265_RS04465 +0.2 1.1 PspC family transcriptional regulator compare
CA265_RS02365 +0.2 1.8 hypothetical protein compare
CA265_RS11800 +0.2 1.2 hypothetical protein compare
CA265_RS16455 +0.2 1.7 AraC family transcriptional regulator compare
CA265_RS03255 +0.2 1.7 glycerophosphodiester phosphodiesterase compare
CA265_RS12800 +0.2 1.0 NAD(P)H-dependent oxidoreductase compare
CA265_RS24070 +0.2 1.3 hypothetical protein compare
CA265_RS21425 +0.2 1.5 hypothetical protein compare
CA265_RS01165 +0.2 0.6 hypothetical protein compare
CA265_RS20380 +0.2 1.6 hemagglutinin compare
CA265_RS23660 +0.2 1.6 short-chain dehydrogenase compare
CA265_RS09900 +0.2 1.4 TetR family transcriptional regulator compare
CA265_RS20320 +0.2 2.1 hypothetical protein compare
CA265_RS23035 +0.2 1.0 four-helix bundle copper-binding protein compare
CA265_RS23640 +0.2 1.8 hypothetical protein compare
CA265_RS08935 +0.2 1.2 (2Fe-2S)-binding protein compare
CA265_RS19810 +0.2 0.5 hypothetical protein compare
CA265_RS00200 +0.2 1.2 N-acetyltransferase compare
CA265_RS21670 +0.2 0.9 hypothetical protein compare
CA265_RS18035 +0.2 0.9 hypothetical protein compare
CA265_RS15280 +0.2 1.4 glycine C-acetyltransferase compare
CA265_RS24005 +0.2 0.9 OsmC family peroxiredoxin compare
CA265_RS14435 +0.2 1.1 GNAT family N-acetyltransferase compare
CA265_RS19475 +0.2 1.8 hypothetical protein compare
CA265_RS14710 +0.2 1.6 hypothetical protein compare
CA265_RS19940 +0.2 1.9 hypothetical protein compare


Specific Phenotypes

For 12 genes in this experiment

For stress Cisplatin in Pedobacter sp. GW460-11-11-14-LB5

For stress Cisplatin across organisms