Experiment set1IT015 for Herbaspirillum seropedicae SmR1

Compare to:

Sodium pyruvate carbon source

200 most detrimental genes:

  gene name fitness t score description  
HSERO_RS18090 +1.7 2.7 II family cellulose-binding protein compare
HSERO_RS13040 +1.5 2.7 hypothetical protein compare
HSERO_RS09945 +1.3 4.2 sugar transporter compare
HSERO_RS12735 +1.2 2.3 GNAT family acetyltransferase compare
HSERO_RS12220 +1.1 1.3 dehydrogenase compare
HSERO_RS19885 +1.1 2.4 AsnC family transcriptional regulator compare
HSERO_RS01090 +1.1 2.5 hypothetical protein compare
HSERO_RS21990 +1.1 1.4 hypothetical protein compare
HSERO_RS13675 +1.1 2.3 histidine kinase compare
HSERO_RS14000 +1.1 2.2 hypothetical protein compare
HSERO_RS11305 +1.0 3.7 membrane protein compare
HSERO_RS22065 +1.0 3.0 EpiA compare
HSERO_RS01505 +1.0 3.1 transketolase compare
HSERO_RS10405 +1.0 1.8 phosphate starvation protein PhoH compare
HSERO_RS09835 +1.0 1.5 hypothetical protein compare
HSERO_RS00965 +0.9 1.0 trehalose-phosphatase compare
HSERO_RS09085 +0.9 1.7 LysR family transcriptional regulator compare
HSERO_RS23950 +0.9 1.4 amino acid transporter LysE compare
HSERO_RS18280 +0.9 1.4 anthranilate 1,2-dioxygenase small subunit compare
HSERO_RS07435 +0.9 1.6 formate dehydrogenase accessory protein FdhD compare
HSERO_RS20080 +0.9 1.3 hypothetical protein compare
HSERO_RS18875 +0.9 1.1 ATPase compare
HSERO_RS00450 +0.9 2.7 phosphoenolpyruvate-protein phosphotransferase compare
HSERO_RS10835 +0.9 2.7 peptide deformylase compare
HSERO_RS15165 +0.9 3.8 chemotaxis protein compare
HSERO_RS22015 +0.8 1.7 DNA-binding protein compare
HSERO_RS22285 +0.8 2.2 GntR family transcriptional regulator compare
HSERO_RS10215 +0.8 2.7 flagellar P-ring protein FlgI compare
HSERO_RS02445 +0.8 2.1 proteinase inhibitor compare
HSERO_RS01020 +0.8 2.2 hypothetical protein compare
HSERO_RS03920 +0.8 1.5 hypothetical protein compare
HSERO_RS01970 +0.8 1.4 esterase compare
HSERO_RS10750 +0.8 1.4 hypothetical protein compare
HSERO_RS03465 +0.8 1.4 hemin transporter compare
HSERO_RS17820 +0.8 2.5 Lipid A core--O-antigen ligase compare
HSERO_RS06935 +0.8 1.2 RNA-binding protein compare
HSERO_RS02130 +0.8 2.0 thiazole synthase compare
HSERO_RS19090 +0.8 1.2 C4-dicarboxylate ABC transporter compare
HSERO_RS03700 +0.8 1.5 type VI secretion protein compare
HSERO_RS03235 +0.8 1.4 hypothetical protein compare
HSERO_RS23755 +0.8 2.8 cell division protein FtsI compare
HSERO_RS16045 +0.8 1.1 cytochrome oxidase compare
HSERO_RS06400 +0.8 1.8 LysR family transcriptional regulator compare
HSERO_RS02300 +0.8 2.2 nitrate ABC transporter ATPase compare
HSERO_RS21500 +0.8 2.6 hypothetical protein compare
HSERO_RS10765 +0.8 2.4 hypothetical protein compare
HSERO_RS01835 +0.8 1.2 hypothetical protein compare
HSERO_RS02545 +0.7 1.2 membrane protein compare
HSERO_RS09940 +0.7 1.5 peptidylprolyl isomerase compare
HSERO_RS01605 +0.7 2.3 amino acid dehydrogenase compare
HSERO_RS05330 +0.7 2.3 glucose dehydrogenase compare
HSERO_RS10210 +0.7 1.5 flagellar L-ring protein FlgH compare
HSERO_RS17220 +0.7 1.9 membrane protein compare
HSERO_RS22300 +0.7 3.9 MFS transporter compare
HSERO_RS10065 +0.7 1.6 hypothetical protein compare
HSERO_RS07025 +0.7 2.0 ATP-dependent Clp protease ClpS compare
HSERO_RS16035 +0.7 2.3 cytochrome C oxidase compare
HSERO_RS22615 +0.7 1.3 transcriptional regulator compare
HSERO_RS13890 +0.7 2.6 LuxR family transcriptional regulator compare
HSERO_RS06745 +0.7 1.2 hypothetical protein compare
HSERO_RS02875 +0.7 1.3 transcriptional regulator compare
HSERO_RS18675 +0.7 1.2 hypothetical protein compare
HSERO_RS05380 +0.7 2.4 LysR family transcriptional regulator compare
HSERO_RS05745 +0.7 4.4 NADP-dependent malic enzyme oxidoreductase compare
HSERO_RS10315 +0.7 1.4 flagellar hook-basal body protein FliE compare
HSERO_RS06640 +0.7 1.6 N-carbamoylsarcosine amidase compare
HSERO_RS11665 +0.7 1.7 nitrate ABC transporter ATP-binding protein compare
HSERO_RS10305 +0.7 2.1 flagellar motor switch protein FliG compare
HSERO_RS04715 +0.7 1.7 hypothetical protein compare
HSERO_RS07320 +0.7 1.8 hypothetical protein compare
HSERO_RS02450 +0.7 1.1 arsenate reductase compare
HSERO_RS05325 +0.7 1.0 ribose ABC transporter permease compare
HSERO_RS02425 +0.7 2.3 transcriptional activator compare
HSERO_RS07890 +0.6 0.9 hypothetical protein compare
HSERO_RS04135 +0.6 1.3 amidohydrolase compare
HSERO_RS05540 +0.6 1.8 cytochrome C' compare
HSERO_RS15940 +0.6 3.5 peptide ABC transporter substrate-binding protein compare
HSERO_RS22360 +0.6 2.5 lauroyl acyltransferase compare
HSERO_RS10200 +0.6 2.8 flagellar basal body rod protein FlgF compare
HSERO_RS10285 +0.6 2.9 flagellar hook-length control protein compare
HSERO_RS10010 +0.6 1.7 UDP-glucose 6-dehydrogenase compare
HSERO_RS01160 +0.6 1.4 LysR family transcriptional regulator compare
HSERO_RS18965 +0.6 1.2 thiopurine S-methyltransferase compare
HSERO_RS00835 +0.6 1.4 molybdopterin biosynthesis protein MoeB compare
HSERO_RS22525 +0.6 1.3 glyoxalase compare
HSERO_RS06960 +0.6 1.8 chemotaxis protein CheY compare
HSERO_RS19505 +0.6 2.3 membrane protein compare
HSERO_RS03135 +0.6 1.8 diguanylate cyclase compare
HSERO_RS13885 +0.6 4.3 histidine kinase compare
HSERO_RS17530 +0.6 1.9 RpiR family transcriptional regulator compare
HSERO_RS02800 +0.6 0.9 hypothetical protein compare
HSERO_RS23435 +0.6 1.2 MerR family transcriptional regulator compare
HSERO_RS01325 +0.6 1.7 cation/multidrug efflux protein compare
HSERO_RS09955 +0.6 2.8 chain-length determining protein compare
HSERO_RS19480 +0.6 1.8 membrane protein compare
HSERO_RS03260 +0.6 1.4 histidine kinase compare
HSERO_RS17570 +0.6 0.9 4-carboxymuconolactone decarboxylase compare
HSERO_RS01590 +0.6 2.5 antibiotic biosynthesis monooxygenase compare
HSERO_RS13800 +0.6 1.6 glycosyl transferase family 1 compare
HSERO_RS01080 +0.6 2.2 tail protein compare
HSERO_RS08605 +0.6 1.3 Hsp33 chaperonin compare
HSERO_RS04170 +0.6 0.9 hypothetical protein compare
HSERO_RS22090 +0.6 2.8 hypothetical protein compare
HSERO_RS22075 +0.6 1.6 phosphohexose mutase compare
HSERO_RS05025 +0.6 1.3 hypothetical protein compare
HSERO_RS11335 +0.6 2.0 permease compare
HSERO_RS03965 +0.6 1.4 hypothetical protein compare
HSERO_RS09520 +0.6 1.0 alanyl-tRNA synthetase compare
HSERO_RS08420 +0.6 1.0 hypothetical protein compare
HSERO_RS00410 +0.6 0.9 phosphoheptose isomerase compare
HSERO_RS15410 +0.6 1.2 glutamine amidotransferase compare
HSERO_RS02205 +0.6 1.2 phosphatase compare
HSERO_RS16370 +0.6 0.8 peptidyl-prolyl cis-trans isomerase compare
HSERO_RS23760 +0.6 1.5 hypothetical protein compare
HSERO_RS20775 +0.6 0.8 membrane protein compare
HSERO_RS21115 +0.6 1.6 flagellar motor protein compare
HSERO_RS08410 +0.6 1.5 hypothetical protein compare
HSERO_RS03085 +0.6 2.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
HSERO_RS10175 +0.6 1.4 flagellar basal body P-ring biosynthesis protein FlgA compare
HSERO_RS01315 +0.6 1.3 transcriptional regulator compare
HSERO_RS05440 +0.5 0.9 hypothetical protein compare
HSERO_RS17835 +0.5 2.2 NADPH-dependent FMN reductase compare
HSERO_RS09470 +0.5 2.1 acetaldehyde dehydrogenase compare
HSERO_RS14320 +0.5 0.8 FmdB family transcriptional regulator compare
HSERO_RS09420 +0.5 1.8 HAD family hydrolase compare
HSERO_RS10140 +0.5 2.4 flagellar biosynthesis protein FlhB compare
HSERO_RS07075 +0.5 1.5 cysteine hydrolase compare
HSERO_RS23810 +0.5 1.7 hypothetical protein compare
HSERO_RS16835 +0.5 2.9 phosphatidylglycerophosphatase compare
HSERO_RS03650 +0.5 2.4 Mannose isomerase (EC 5.3.1.7) (from data) compare
HSERO_RS22295 +0.5 2.4 4-hydroxy-4-methyl-2-oxoglutarate aldolase compare
HSERO_RS17855 +0.5 2.4 DEAD/DEAH box helicase compare
HSERO_RS12985 +0.5 1.8 L-lactate dehydrogenase compare
HSERO_RS03015 +0.5 1.0 hypothetical protein compare
HSERO_RS22730 +0.5 2.3 sugar ABC transporter substrate-binding protein compare
HSERO_RS06130 +0.5 1.3 4-hydroxybenzoyl-CoA thioesterase compare
HSERO_RS23455 +0.5 1.0 methylcrotonoyl-CoA carboxylase compare
HSERO_RS03520 +0.5 0.9 aminoglycoside phosphotransferase compare
HSERO_RS10145 +0.5 3.5 flagellar biosynthesis protein FlhA compare
HSERO_RS04875 +0.5 2.4 glycerol kinase compare
HSERO_RS09750 +0.5 1.7 8-amino-7-oxononanoate synthase compare
HSERO_RS09760 +0.5 2.3 hypothetical protein compare
HSERO_RS23610 +0.5 1.3 urease subunit gamma compare
HSERO_RS01455 +0.5 0.7 hypothetical protein compare
HSERO_RS12045 +0.5 2.2 trans-aconitate 2-methyltransferase compare
HSERO_RS18105 +0.5 0.8 hypothetical protein compare
HSERO_RS05855 +0.5 2.2 flagellar motor protein MotA compare
HSERO_RS17580 +0.5 1.6 hypothetical protein compare
HSERO_RS03915 +0.5 1.2 hypothetical protein compare
HSERO_RS17180 +0.5 1.3 paraquat-inducible protein A compare
HSERO_RS15130 +0.5 1.6 MaoC family dehydratase compare
HSERO_RS02900 +0.5 2.0 ammonium transporter compare
HSERO_RS16405 +0.5 1.9 peptidase M50 compare
HSERO_RS19070 +0.5 1.8 acetyl-CoA acetyltransferase compare
HSERO_RS04380 +0.5 2.0 hypothetical protein compare
HSERO_RS00900 +0.5 0.8 L-proline ABC transporter, ATPase component 2 (from data) compare
HSERO_RS19275 +0.5 1.3 acyl-CoA hydrolase compare
HSERO_RS22365 +0.5 2.0 lipid kinase compare
HSERO_RS20980 +0.5 2.4 oxidoreductase compare
HSERO_RS22215 +0.5 1.5 branched-chain amino acid ABC transporter permease compare
HSERO_RS18260 +0.5 2.1 branched-chain amino acid ABC transporter permease compare
HSERO_RS08735 +0.5 1.7 hypothetical protein compare
HSERO_RS08690 +0.5 0.9 alpha/beta hydrolase compare
HSERO_RS08795 +0.5 0.6 transcriptional regulator compare
HSERO_RS06445 +0.5 2.7 membrane protein compare
HSERO_RS12595 +0.5 1.7 AraC family transcriptional regulator compare
HSERO_RS10665 +0.5 2.0 coproporphyrinogen III oxidase compare
HSERO_RS13855 +0.5 3.1 hypothetical protein compare
HSERO_RS04690 +0.5 2.2 acyl-CoA dehydrogenase compare
HSERO_RS17305 +0.5 2.3 enhanced serine sensitivity protein compare
HSERO_RS18320 +0.5 1.6 LysR family transcriptional regulator compare
HSERO_RS21615 +0.5 2.0 ABC transporter substrate-binding protein compare
HSERO_RS02220 +0.5 2.4 xylulokinase compare
HSERO_RS12145 +0.5 1.4 hypothetical protein compare
HSERO_RS18800 +0.5 2.0 4-hydroxyphenylpyruvate dioxygenase compare
HSERO_RS04845 +0.5 1.6 ABC transporter compare
HSERO_RS07400 +0.5 1.3 LysR family transcriptional regulator compare
HSERO_RS12350 +0.5 2.2 histidine kinase compare
HSERO_RS03625 +0.5 1.8 nicotinamidase-like protein compare
HSERO_RS17490 +0.5 1.1 AraC family transcriptional regulator compare
HSERO_RS23995 +0.5 1.8 amino acid ABC transporter ATP-binding protein compare
HSERO_RS01500 +0.5 1.5 transketolase compare
HSERO_RS11105 +0.5 0.6 beta-lactamase compare
HSERO_RS08775 +0.5 0.8 membrane protein compare
HSERO_RS21530 +0.5 2.2 cytochrome C550 compare
HSERO_RS12750 +0.5 1.4 acyl-CoA dehydrogenase compare
HSERO_RS12865 +0.5 1.2 spore coat protein compare
HSERO_RS23800 +0.5 0.9 hypothetical protein compare
HSERO_RS19785 +0.5 1.6 sensor histidine kinase compare
HSERO_RS15140 +0.5 1.7 chemotaxis protein CheY compare
HSERO_RS14015 +0.5 0.9 hisitidine kinase compare
HSERO_RS11990 +0.5 1.5 periplasmic or secreted lipoprotein compare
HSERO_RS02365 +0.5 1.1 hypothetical protein compare
HSERO_RS11400 +0.5 1.0 exonuclease compare
HSERO_RS20615 +0.4 1.2 phenylacetate-CoA oxygenase subunit PaaB compare
HSERO_RS12645 +0.4 1.8 methyltransferase compare
HSERO_RS10125 +0.4 1.3 chemotaxis protein compare
HSERO_RS05350 +0.4 2.0 hypothetical protein compare
HSERO_RS13165 +0.4 1.9 acylamide amidohydrolase compare
HSERO_RS21635 +0.4 1.3 DNA-directed DNA polymerase compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Sodium pyruvate in Herbaspirillum seropedicae SmR1

For carbon source Sodium pyruvate across organisms