Experiment set1IT015 for Burkholderia phytofirmans PsJN

Compare to:

D-Galacturonic Acid monohydrate carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS17680 -7.8 -4.5 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS10100 -6.3 -5.1 dihydroxy-acid dehydratase compare
BPHYT_RS14895 -6.3 -4.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS08955 -6.2 -4.3 homoserine dehydrogenase compare
BPHYT_RS33915 -6.1 -8.5 isopropylmalate isomerase compare
BPHYT_RS17890 -6.0 -3.0 shikimate kinase compare
BPHYT_RS13705 -5.9 -3.5 chorismate synthase compare
BPHYT_RS14845 -5.8 -3.7 cysteine synthase compare
BPHYT_RS18320 -5.8 -11.1 orotate phosphoribosyltransferase compare
BPHYT_RS33835 -5.7 -7.5 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS15915 -5.7 -12.8 ornithine carbamoyltransferase compare
BPHYT_RS06545 -5.7 -10.7 acetolactate synthase compare
BPHYT_RS15920 -5.6 -11.8 argininosuccinate synthase compare
BPHYT_RS16270 -5.5 -4.1 phosphoglycerate kinase compare
BPHYT_RS14190 -5.4 -10.4 carbamoyl phosphate synthase large subunit compare
BPHYT_RS33875 -5.4 -4.6 tryptophan synthase subunit alpha compare
BPHYT_RS06900 -5.4 -8.1 aspartate aminotransferase compare
BPHYT_RS33645 -5.3 -7.2 homoserine kinase compare
BPHYT_RS16245 -5.3 -5.5 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS17855 -5.2 -17.4 glutamate synthase compare
BPHYT_RS06610 -5.1 -2.1 triosephosphate isomerase compare
BPHYT_RS17405 -5.0 -1.4 indole-3-glycerol phosphate synthase compare
BPHYT_RS03640 -5.0 -3.4 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS17690 -4.9 -11.0 imidazole glycerol phosphate synthase compare
BPHYT_RS08960 -4.8 -2.4 threonine synthase compare
BPHYT_RS33880 -4.8 -9.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS09515 -4.8 -6.2 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS16905 -4.8 -6.6 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS17685 -4.8 -6.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS12845 -4.6 -17.3 ATPase compare
BPHYT_RS33840 -4.6 -8.4 amidophosphoribosyltransferase compare
BPHYT_RS03150 -4.6 -12.2 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS14915 -4.5 -6.4 phosphoserine aminotransferase compare
BPHYT_RS33900 -4.5 -10.2 3-isopropylmalate dehydrogenase compare
BPHYT_RS17390 -4.4 -12.6 anthranilate synthase subunit I compare
BPHYT_RS02590 -4.3 -8.4 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS01595 -4.3 -8.4 homoserine O-acetyltransferase compare
BPHYT_RS16675 -4.3 -2.7 dihydroorotase compare
BPHYT_RS17400 -4.2 -4.8 anthranilate phosphoribosyltransferase compare
BPHYT_RS06555 -4.2 -8.9 ketol-acid reductoisomerase compare
BPHYT_RS16835 -4.2 -6.2 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS18705 -4.2 -2.8 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS17670 -4.1 -4.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS17700 -4.0 -4.4 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS17675 -3.9 -2.7 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS14910 -3.9 -6.8 chorismate mutase compare
BPHYT_RS17715 -3.8 -6.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS01590 -3.8 -4.1 methionine biosynthesis protein MetW compare
BPHYT_RS17395 -3.8 -2.6 anthranilate synthase subunit II compare
BPHYT_RS33865 -3.8 -6.8 tryptophan synthase alpha chain compare
BPHYT_RS12530 -3.8 -4.1 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS08235 -3.7 -1.5 nucleoprotein, Hfg, host factor I compare
BPHYT_RS17885 -3.7 -6.2 3-dehydroquinate synthase compare
BPHYT_RS08565 -3.6 -1.4 dihydroorotate dehydrogenase compare
BPHYT_RS09500 -3.3 -6.9 glucose-6-phosphate isomerase compare
BPHYT_RS08850 -3.3 -2.8 transcriptional regulator compare
BPHYT_RS05960 -3.2 -6.1 endoribonuclease L-PSP compare
BPHYT_RS06405 -3.2 -5.3 phosphoribosylamine--glycine ligase compare
BPHYT_RS16840 -3.0 -3.6 transketolase compare
BPHYT_RS32150 -3.0 -2.0 hypothetical protein compare
BPHYT_RS16255 -3.0 -3.4 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS29920 -2.9 -1.2 hypothetical protein compare
BPHYT_RS03535 -2.9 -4.5 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS17380 -2.9 -8.1 ribulose-phosphate 3-epimerase compare
BPHYT_RS12985 -2.8 -2.3 amino acid acetyltransferase compare
BPHYT_RS03645 -2.8 -2.7 tRNA dimethylallyltransferase compare
BPHYT_RS04955 -2.8 -2.6 methionyl-tRNA synthetase compare
BPHYT_RS14195 -2.7 -2.6 carbamoyl phosphate synthase small subunit compare
BPHYT_RS12465 -2.7 -3.8 inositol monophosphatase compare
BPHYT_RS03625 -2.6 -9.8 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS03725 -2.5 -2.0 serine hydroxymethyltransferase compare
BPHYT_RS15620 -2.5 -3.8 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS24140 -2.4 -3.7 2,5-dioxovalerate dehydrogenase compare
BPHYT_RS25980 -2.4 -1.3 urea carboxylase compare
BPHYT_RS15670 -2.4 -4.3 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS28595 -2.3 -1.6 glyoxalase compare
BPHYT_RS06045 -2.3 -8.7 transaldolase compare
BPHYT_RS02610 -2.3 -3.3 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS17095 -2.2 -2.5 proline--tRNA ligase compare
BPHYT_RS32210 -2.2 -0.8 hypothetical protein compare
BPHYT_RS24155 -2.2 -6.7 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data) conserved
BPHYT_RS17265 -2.1 -1.7 cell division protein compare
BPHYT_RS30085 -2.1 -1.6 hypothetical protein compare
BPHYT_RS08995 -2.1 -1.8 hypothetical protein compare
BPHYT_RS23840 -2.1 -2.6 methyltransferase compare
BPHYT_RS33460 -2.0 -1.3 protocatechuate 3,4-dioxygenase subunit alpha compare
BPHYT_RS30645 -2.0 -2.4 hypothetical protein compare
BPHYT_RS02905 -2.0 -11.6 RNA polymerase subunit sigma-54 compare
BPHYT_RS11765 -2.0 -1.1 polyamine ABC transporter permease compare
BPHYT_RS32395 -1.9 -1.4 hypothetical protein compare
BPHYT_RS12055 -1.9 -10.8 phosphoenolpyruvate synthase compare
BPHYT_RS28705 -1.8 -1.5 IclR family transcriptional regulator compare
BPHYT_RS25870 -1.8 -1.1 type III secretion system ATPase compare
BPHYT_RS05705 -1.8 -1.3 hypothetical protein compare
BPHYT_RS16880 -1.7 -1.6 malic enzyme compare
BPHYT_RS14245 -1.7 -1.0 membrane protein compare
BPHYT_RS08950 -1.6 -4.8 aminotransferase compare
BPHYT_RS18340 -1.6 -1.6 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS04820 -1.6 -4.5 LysR family transcriptional regulator compare
BPHYT_RS02570 -1.6 -3.1 phosphocarrier protein HPr compare
BPHYT_RS16975 -1.6 -2.6 shikimate 5-dehydrogenase compare
BPHYT_RS08335 -1.6 -1.4 hypothetical protein compare
BPHYT_RS35275 -1.6 -1.8 acetyltransferase compare
BPHYT_RS33905 -1.6 -0.8 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS04725 -1.6 -4.4 sulfite reductase compare
BPHYT_RS16065 -1.6 -1.0 LacI family transcriptional regulator compare
BPHYT_RS12935 -1.5 -4.1 chemotaxis protein CheY compare
BPHYT_RS16180 -1.5 -1.1 TetR family transcriptional regulator compare
BPHYT_RS26685 -1.5 -1.5 precorrin-8X methylmutase compare
BPHYT_RS06685 -1.5 -1.6 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS13080 -1.5 -1.1 hypothetical protein compare
BPHYT_RS22910 -1.5 -1.3 hypothetical protein compare
BPHYT_RS17525 -1.5 -1.5 glutaredoxin compare
BPHYT_RS16990 -1.5 -4.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
BPHYT_RS36435 -1.5 -2.1 hypothetical protein compare
BPHYT_RS02880 -1.5 -1.5 ATP-dependent protease compare
BPHYT_RS30415 -1.4 -1.2 AraC family transcriptional regulator compare
BPHYT_RS12990 -1.4 -1.3 iron transporter compare
BPHYT_RS09385 -1.4 -1.0 FAD-dependent oxidoreductase compare
BPHYT_RS13220 -1.4 -4.8 phosphomethylpyrimidine synthase compare
BPHYT_RS17520 -1.4 -3.3 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS21330 -1.4 -1.7 hypothetical protein compare
BPHYT_RS32750 -1.4 -1.3 lipoprotein compare
BPHYT_RS27175 -1.4 -0.9 DNA-binding protein compare
BPHYT_RS29185 -1.4 -1.7 sugar ABC transporter permease compare
BPHYT_RS14550 -1.4 -1.0 tRNA-Asn compare
BPHYT_RS22055 -1.3 -1.7 DNA-binding protein compare
BPHYT_RS20440 -1.3 -1.3 IclR family transcriptional regulator compare
BPHYT_RS14670 -1.3 -1.1 hypothetical protein compare
BPHYT_RS00160 -1.3 -1.2 ABC transporter substrate-binding protein compare
BPHYT_RS04890 -1.3 -1.3 cobalamin biosynthesis protein CobD compare
BPHYT_RS20475 -1.3 -2.1 hypothetical protein compare
BPHYT_RS21460 -1.3 -1.9 UDP-N-acetylglucosamine 2-epimerase compare
BPHYT_RS26695 -1.3 -2.4 cobalamin biosynthesis protein CbiG compare
BPHYT_RS28285 -1.3 -1.7 MFS transporter compare
BPHYT_RS36385 -1.3 -0.9 TetR family transcriptional regulator compare
BPHYT_RS15890 -1.3 -1.1 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
BPHYT_RS17945 -1.3 -1.5 cytochrome C biogenesis protein compare
BPHYT_RS12840 -1.3 -2.4 pyruvate dehydrogenase compare
BPHYT_RS02540 -1.3 -1.4 hypothetical protein compare
BPHYT_RS03495 -1.3 -3.5 hypothetical protein compare
BPHYT_RS13645 -1.3 -8.8 threonine--tRNA ligase compare
BPHYT_RS25335 -1.3 -0.9 hypothetical protein compare
BPHYT_RS23225 -1.3 -1.9 hypothetical protein compare
BPHYT_RS35770 -1.2 -1.1 glyoxalase compare
BPHYT_RS12940 -1.2 -3.5 signal transduction histidine kinase compare
BPHYT_RS32435 -1.2 -1.6 formate dehydrogenase-N subunit beta compare
BPHYT_RS05215 -1.2 -4.3 DNA-binding protein compare
BPHYT_RS14060 -1.2 -1.2 peptidase M23 compare
BPHYT_RS28860 -1.2 -0.9 haloacid dehalogenase compare
BPHYT_RS04720 -1.2 -3.5 transcriptional regulator compare
BPHYT_RS34490 -1.2 -0.9 hypothetical protein compare
BPHYT_RS34320 -1.2 -1.4 DNA-binding protein compare
BPHYT_RS08525 -1.2 -1.1 SAM-dependent methyltransferase compare
BPHYT_RS04335 -1.2 -1.1 membrane protein compare
BPHYT_RS25080 -1.2 -1.5 glycine/betaine ABC transporter substrate-binding protein compare
BPHYT_RS24160 -1.2 -3.6 D-galactarate dehydratase compare
BPHYT_RS15415 -1.2 -6.9 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS14755 -1.2 -1.3 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS36570 -1.2 -1.4 histone compare
BPHYT_RS04965 -1.1 -3.8 ATP-binding protein compare
BPHYT_RS02310 -1.1 -6.7 5-methyltetrahydrofolate--homocysteine methyltransferase compare
BPHYT_RS32735 -1.1 -2.4 hypothetical protein compare
BPHYT_RS33360 -1.1 -1.2 formyl-CoA transferase compare
BPHYT_RS17920 -1.1 -1.1 protein CyaY compare
BPHYT_RS29520 -1.1 -0.8 hypothetical protein compare
BPHYT_RS30590 -1.1 -1.2 transcriptional regulator compare
BPHYT_RS24170 -1.1 -2.5 gluconolactonase compare
BPHYT_RS04920 -1.1 -1.9 aspartate 1-decarboxylase compare
BPHYT_RS15300 -1.1 -2.0 hypothetical protein compare
BPHYT_RS19920 -1.1 -0.9 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS33580 -1.1 -2.7 geranyltranstransferase compare
BPHYT_RS35120 -1.1 -1.5 hypothetical protein compare
BPHYT_RS30225 -1.1 -2.1 AsnC family transcriptional regulator compare
BPHYT_RS00790 -1.1 -1.5 conjugal transfer protein TraF compare
BPHYT_RS33135 -1.1 -1.5 LysR family transcriptional regulator compare
BPHYT_RS26665 -1.1 -3.8 cobalt-precorrin-6X reductase compare
BPHYT_RS11040 -1.1 -1.0 GntR family transcriptional regulator compare
BPHYT_RS14865 -1.0 -2.0 UDP-glucose 6-dehydrogenase compare
BPHYT_RS15410 -1.0 -2.6 hypothetical protein compare
BPHYT_RS25970 -1.0 -0.8 urea amidolyase compare
BPHYT_RS02825 -1.0 -1.5 ferredoxin compare
BPHYT_RS21495 -1.0 -0.8 ABC transporter compare
BPHYT_RS29085 -1.0 -1.1 LysR family transcriptional regulator compare
BPHYT_RS08125 -1.0 -5.5 ATPase compare
BPHYT_RS34920 -1.0 -1.3 IclR family transcriptional regulator compare
BPHYT_RS29655 -1.0 -1.6 polysaccharide deacetylase compare
BPHYT_RS13310 -1.0 -1.4 dihydropyrimidine dehydrogenase subunit B compare
BPHYT_RS28320 -1.0 -1.5 molecular chaperone DnaJ compare
BPHYT_RS21765 -1.0 -1.3 IclR family transcriptional regulator compare
BPHYT_RS02305 -1.0 -4.5 methionine synthase compare
BPHYT_RS17925 -1.0 -1.6 hypothetical protein compare
BPHYT_RS31635 -1.0 -0.9 choline dehydrogenase compare
BPHYT_RS10720 -1.0 -0.9 hypothetical protein compare
BPHYT_RS24845 -1.0 -4.2 cobaltochelatase subunit CobN compare
BPHYT_RS09610 -1.0 -2.0 hypothetical protein compare
BPHYT_RS05005 -1.0 -2.1 hypothetical protein compare
BPHYT_RS23600 -1.0 -1.4 hypothetical protein compare
BPHYT_RS27490 -1.0 -4.3 porin compare
BPHYT_RS34410 -1.0 -0.9 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source D-Galacturonic Acid monohydrate in Burkholderia phytofirmans PsJN

For carbon source D-Galacturonic Acid monohydrate across organisms